Wall clock time and date at job start Mon Mar 30 2020 05:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46894 * 111.00040 * 2 1 4 4 C 1.50703 * 109.47312 * 179.97438 * 3 2 1 5 5 C 1.34303 * 126.47579 * 260.00514 * 4 3 2 6 6 N 1.37003 * 109.93145 * 179.97438 * 5 4 3 7 7 C 1.37206 * 125.09038 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99834 * 201.10160 * 7 6 5 9 9 C 1.38851 * 120.00109 * 21.09678 * 7 6 5 10 10 N 1.31443 * 120.00040 * 10.74800 * 9 7 6 11 11 Si 1.86793 * 120.00208 * 190.74920 * 9 7 6 12 12 H 1.48504 * 109.47389 * 89.99662 * 11 9 7 13 13 H 1.48501 * 109.47487 * 210.00152 * 11 9 7 14 14 H 1.48510 * 109.47064 * 330.00289 * 11 9 7 15 15 C 1.38115 * 109.81888 * 359.97438 * 6 5 4 16 16 C 1.38960 * 133.42139 * 180.02562 * 15 6 5 17 17 C 1.37899 * 119.91927 * 179.97438 * 16 15 6 18 18 C 1.38748 * 120.64573 * 359.72280 * 17 16 15 19 19 C 1.37771 * 120.36667 * 0.55877 * 18 17 16 20 20 C 1.50703 * 120.17299 * 179.72172 * 19 18 17 21 21 C 1.39509 * 119.65740 * 359.44540 * 19 18 17 22 22 H 1.08997 * 109.46931 * 299.99657 * 1 2 3 23 23 H 1.09003 * 109.46891 * 60.00159 * 1 2 3 24 24 H 1.09000 * 109.46856 * 180.02562 * 1 2 3 25 25 H 1.00901 * 110.99535 * 123.95417 * 2 1 3 26 26 H 1.09008 * 109.47277 * 60.00001 * 3 2 1 27 27 H 1.08999 * 109.47308 * 300.00066 * 3 2 1 28 28 H 1.08005 * 125.03313 * 359.97438 * 5 4 3 29 29 H 0.97001 * 120.00081 * 179.97438 * 10 9 7 30 30 H 1.07995 * 120.03860 * 359.97225 * 16 15 6 31 31 H 1.08004 * 119.67345 * 179.97438 * 17 16 15 32 32 H 1.08000 * 119.81347 * 180.30297 * 18 17 16 33 33 H 1.08994 * 109.47632 * 269.72298 * 20 19 18 34 34 H 1.09001 * 109.47400 * 149.71887 * 20 19 18 35 35 H 1.09003 * 109.47140 * 29.72779 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5020 1.3312 0.0006 5 6 4.3047 1.4975 1.0645 6 7 5.6158 1.3941 0.6810 7 6 6.6948 1.5137 1.5200 8 1 7.6669 1.7584 1.1180 9 6 6.5370 1.3202 2.8859 10 7 5.4152 0.8195 3.3534 11 14 7.9188 1.7716 4.0590 12 1 7.7593 3.1831 4.4921 13 1 7.8709 0.8810 5.2464 14 1 9.2249 1.6095 3.3711 15 6 5.6889 1.1516 -0.6768 16 6 6.7469 0.9664 -1.5584 17 6 6.4964 0.7360 -2.8947 18 6 5.1943 0.6810 -3.3710 19 6 4.1311 0.8676 -2.5149 20 6 2.7189 0.8131 -3.0380 21 6 4.3685 1.1016 -1.1602 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8306 -0.5261 0.7814 26 1 1.6460 1.8948 0.8900 27 1 1.6460 1.8947 -0.8900 28 1 3.9666 1.6849 2.0730 29 1 5.3051 0.6840 4.3076 30 1 7.7641 1.0029 -1.1975 31 1 7.3217 0.5930 -3.5766 32 1 5.0135 0.4948 -4.4193 33 1 2.4058 1.8114 -3.3437 34 1 2.0549 0.4481 -2.2544 35 1 2.6743 0.1402 -3.8944 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084842822.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:06 Heat of formation + Delta-G solvation = 51.140699 kcal Electronic energy + Delta-G solvation = -17437.045109 eV Core-core repulsion = 14820.894346 eV Total energy + Delta-G solvation = -2616.150763 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.08853 -36.29182 -35.62829 -33.08976 -31.95684 -29.86507 -28.08248 -26.87749 -25.40200 -24.34425 -22.56756 -20.84693 -20.48269 -18.76859 -17.05553 -15.64911 -15.60736 -14.61578 -14.59972 -14.24641 -14.07810 -13.58774 -13.29518 -13.07097 -12.49602 -12.44034 -12.05120 -11.75021 -11.51706 -11.40207 -11.33288 -11.13709 -11.07665 -10.70499 -10.54792 -10.36137 -10.06954 -9.67576 -9.16955 -8.30832 -7.88295 -7.03629 -6.83717 -6.46514 -4.28422 2.24366 2.70822 3.00725 3.02592 3.06312 3.79035 3.94834 4.67392 4.85445 5.06258 5.13186 5.62076 5.71762 5.79720 5.85644 5.91099 6.08369 6.13168 6.15085 6.17007 6.34163 6.41273 6.51520 6.59545 6.73860 6.97927 7.03455 7.14382 7.19793 7.26724 7.53543 7.60047 7.62477 7.75265 7.94708 8.07923 8.24015 8.47256 9.01532 9.44675 10.28060 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.020108 B = 0.008813 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.131154 B = 3176.447365 C = 4439.669853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.689 5.689 3 C 0.153 3.847 4 C -0.254 4.254 5 C 0.096 3.904 6 N -0.291 5.291 7 C -0.338 4.338 8 H 0.105 0.895 9 C 0.041 3.959 10 N -0.854 5.854 11 Si 0.939 3.061 12 H -0.271 1.271 13 H -0.278 1.278 14 H -0.266 1.266 15 C 0.054 3.946 16 C -0.116 4.116 17 C -0.135 4.135 18 C -0.175 4.175 19 C -0.045 4.045 20 C -0.115 4.115 21 C -0.090 4.090 22 H 0.014 0.986 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.344 0.656 26 H 0.021 0.979 27 H 0.065 0.935 28 H 0.167 0.833 29 H 0.278 0.722 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.051 0.949 34 H 0.088 0.912 35 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.438 0.520 -4.035 6.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.321 5.321 3 C 0.025 3.975 4 C -0.261 4.261 5 C -0.040 4.040 6 N 0.047 4.953 7 C -0.465 4.465 8 H 0.122 0.878 9 C -0.166 4.166 10 N -0.486 5.486 11 Si 0.764 3.236 12 H -0.197 1.197 13 H -0.203 1.203 14 H -0.190 1.190 15 C -0.057 4.057 16 C -0.136 4.136 17 C -0.154 4.154 18 C -0.195 4.195 19 C -0.046 4.046 20 C -0.171 4.171 21 C -0.095 4.095 22 H 0.032 0.968 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.161 0.839 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.184 0.816 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.193 0.421 -4.244 5.981 hybrid contribution 0.592 0.326 1.622 1.757 sum -3.601 0.747 -2.622 4.516 Atomic orbital electron populations 1.22168 0.89506 1.00941 0.99644 1.60548 1.05730 1.15455 1.50331 1.19932 0.90728 0.88122 0.98757 1.19582 0.92714 1.21691 0.92162 1.21873 0.82276 1.01204 0.98680 1.40128 1.05319 1.46166 1.03721 1.19829 0.89739 1.48827 0.88154 0.87770 1.25470 0.98593 0.94532 0.98044 1.69887 1.25637 1.37724 1.15387 0.85727 0.80081 0.78764 0.79048 1.19664 1.20287 1.18980 1.18380 0.94862 1.07087 0.85347 1.19829 0.96402 1.05024 0.92378 1.20395 0.96043 1.04852 0.94151 1.20384 0.92371 1.08767 0.97979 1.19084 0.94556 0.99269 0.91641 1.20843 0.94895 1.00245 1.01143 1.18604 0.91888 1.06747 0.92308 0.96787 0.92315 0.92214 0.83850 0.96076 0.91681 0.81559 0.91143 0.87846 0.87738 0.88044 0.93052 0.89332 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.70 60.07 0.64 1.01 16 2 N -0.69 -11.77 5.81 -122.42 -0.71 -12.48 16 3 C 0.15 2.84 5.05 -4.98 -0.03 2.82 16 4 C -0.25 -5.78 5.83 -102.61 -0.60 -6.38 16 5 C 0.10 2.40 9.81 -16.63 -0.16 2.24 16 6 N -0.29 -7.67 2.92 -59.73 -0.17 -7.84 16 7 C -0.34 -8.85 9.93 -14.92 -0.15 -9.00 16 8 H 0.10 2.62 7.85 -52.49 -0.41 2.21 16 9 C 0.04 1.03 5.35 -17.49 -0.09 0.94 16 10 N -0.85 -21.82 10.84 55.49 0.60 -21.22 16 11 Si 0.94 19.05 29.56 -169.99 -5.03 14.02 16 12 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 13 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 14 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 15 C 0.05 1.35 6.75 -83.84 -0.57 0.79 16 16 C -0.12 -2.62 9.95 -39.44 -0.39 -3.01 16 17 C -0.13 -2.68 10.02 -39.52 -0.40 -3.08 16 18 C -0.18 -3.45 9.69 -39.56 -0.38 -3.83 16 19 C -0.04 -0.94 5.91 -104.32 -0.62 -1.56 16 20 C -0.11 -2.00 9.27 36.01 0.33 -1.67 16 21 C -0.09 -2.12 6.14 -105.09 -0.65 -2.76 16 22 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.34 6.11 8.81 -39.29 -0.35 5.77 16 26 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 27 H 0.06 1.15 6.97 -51.93 -0.36 0.79 16 28 H 0.17 4.21 6.34 -52.48 -0.33 3.88 16 29 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 30 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 31 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 32 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.58 5.15 -51.93 -0.27 1.32 16 35 H 0.05 0.75 8.09 -51.93 -0.42 0.33 16 LS Contribution 291.23 15.07 4.39 4.39 Total: -1.00 -27.44 291.23 -8.63 -36.06 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -4.66 Total: 10.57 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -3.05 Total: -23.50 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: -0.28 Total: -41.54 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.44 -8.63 -36.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084842822.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.204 kcal (2) G-P(sol) polarization free energy of solvation -27.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds