Wall clock time and date at job start Mon Mar 30 2020 05:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46894 * 111.00040 * 2 1 4 4 C 1.50703 * 109.47312 * 179.97438 * 3 2 1 5 5 C 1.34303 * 126.47579 * 260.00514 * 4 3 2 6 6 N 1.37003 * 109.93145 * 179.97438 * 5 4 3 7 7 C 1.37206 * 125.09038 * 179.97438 * 6 5 4 8 8 H 1.07997 * 119.99834 * 201.10160 * 7 6 5 9 9 C 1.38851 * 120.00109 * 21.09678 * 7 6 5 10 10 N 1.31443 * 120.00040 * 10.74800 * 9 7 6 11 11 Si 1.86793 * 120.00208 * 190.74920 * 9 7 6 12 12 H 1.48504 * 109.47389 * 89.99662 * 11 9 7 13 13 H 1.48501 * 109.47487 * 210.00152 * 11 9 7 14 14 H 1.48510 * 109.47064 * 330.00289 * 11 9 7 15 15 C 1.38115 * 109.81888 * 359.97438 * 6 5 4 16 16 C 1.38960 * 133.42139 * 180.02562 * 15 6 5 17 17 C 1.37899 * 119.91927 * 179.97438 * 16 15 6 18 18 C 1.38748 * 120.64573 * 359.72280 * 17 16 15 19 19 C 1.37771 * 120.36667 * 0.55877 * 18 17 16 20 20 C 1.50703 * 120.17299 * 179.72172 * 19 18 17 21 21 C 1.39509 * 119.65740 * 359.44540 * 19 18 17 22 22 H 1.08997 * 109.46931 * 299.99657 * 1 2 3 23 23 H 1.09003 * 109.46891 * 60.00159 * 1 2 3 24 24 H 1.09000 * 109.46856 * 180.02562 * 1 2 3 25 25 H 1.00901 * 110.99535 * 123.95417 * 2 1 3 26 26 H 1.09008 * 109.47277 * 60.00001 * 3 2 1 27 27 H 1.08999 * 109.47308 * 300.00066 * 3 2 1 28 28 H 1.08005 * 125.03313 * 359.97438 * 5 4 3 29 29 H 0.97001 * 120.00081 * 179.97438 * 10 9 7 30 30 H 1.07995 * 120.03860 * 359.97225 * 16 15 6 31 31 H 1.08004 * 119.67345 * 179.97438 * 17 16 15 32 32 H 1.08000 * 119.81347 * 180.30297 * 18 17 16 33 33 H 1.08994 * 109.47632 * 269.72298 * 20 19 18 34 34 H 1.09001 * 109.47400 * 149.71887 * 20 19 18 35 35 H 1.09003 * 109.47140 * 29.72779 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5020 1.3312 0.0006 5 6 4.3047 1.4975 1.0645 6 7 5.6158 1.3941 0.6810 7 6 6.6948 1.5137 1.5200 8 1 7.6669 1.7584 1.1180 9 6 6.5370 1.3202 2.8859 10 7 5.4152 0.8195 3.3534 11 14 7.9188 1.7716 4.0590 12 1 7.7593 3.1831 4.4921 13 1 7.8709 0.8810 5.2464 14 1 9.2249 1.6095 3.3711 15 6 5.6889 1.1516 -0.6768 16 6 6.7469 0.9664 -1.5584 17 6 6.4964 0.7360 -2.8947 18 6 5.1943 0.6810 -3.3710 19 6 4.1311 0.8676 -2.5149 20 6 2.7189 0.8131 -3.0380 21 6 4.3685 1.1016 -1.1602 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.8306 -0.5261 0.7814 26 1 1.6460 1.8948 0.8900 27 1 1.6460 1.8947 -0.8900 28 1 3.9666 1.6849 2.0730 29 1 5.3051 0.6840 4.3076 30 1 7.7641 1.0029 -1.1975 31 1 7.3217 0.5930 -3.5766 32 1 5.0135 0.4948 -4.4193 33 1 2.4058 1.8114 -3.3437 34 1 2.0549 0.4481 -2.2544 35 1 2.6743 0.1402 -3.8944 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084842822.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:06 Heat of formation + Delta-G solvation = 36.321423 kcal Electronic energy + Delta-G solvation = -17437.687721 eV Core-core repulsion = 14820.894346 eV Total energy + Delta-G solvation = -2616.793375 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.83962 -37.97098 -37.03419 -34.90103 -33.54589 -31.55161 -29.76323 -28.40704 -27.01895 -25.94351 -23.98456 -22.52218 -22.19827 -20.52570 -18.83643 -17.44303 -17.15122 -16.27076 -16.18570 -15.80462 -15.58430 -15.13489 -14.84622 -14.55499 -14.08439 -13.97549 -13.63678 -13.32373 -13.11736 -12.91652 -12.76241 -12.68364 -12.51394 -12.34967 -12.14649 -11.97885 -11.68689 -11.30515 -10.98327 -10.02290 -9.22162 -8.79994 -8.68615 -8.23698 -6.21688 0.54789 1.03574 1.33803 1.39731 1.48205 2.07992 2.18488 2.89389 3.08364 3.33116 3.69845 4.18527 4.26865 4.36454 4.45949 4.55612 4.68686 4.71114 4.75170 4.80861 4.93798 4.98600 5.03490 5.08211 5.08868 5.27100 5.36676 5.38333 5.53122 5.62465 5.83164 5.88991 6.09085 6.23329 6.40909 6.50131 6.55257 6.61304 7.17173 7.58743 8.42809 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.020108 B = 0.008813 C = 0.006305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.131154 B = 3176.447365 C = 4439.669853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.697 5.697 3 C 0.161 3.839 4 C -0.242 4.242 5 C 0.063 3.937 6 N -0.314 5.314 7 C -0.373 4.373 8 H 0.100 0.900 9 C 0.001 3.999 10 N -0.882 5.882 11 Si 1.010 2.990 12 H -0.265 1.265 13 H -0.271 1.271 14 H -0.260 1.260 15 C 0.019 3.981 16 C -0.148 4.148 17 C -0.119 4.119 18 C -0.176 4.176 19 C -0.051 4.051 20 C -0.110 4.110 21 C -0.117 4.117 22 H 0.020 0.980 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.336 0.664 26 H 0.022 0.978 27 H 0.078 0.922 28 H 0.153 0.847 29 H 0.282 0.718 30 H 0.102 0.898 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.061 0.283 -5.760 7.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.327 5.327 3 C 0.032 3.968 4 C -0.250 4.250 5 C -0.072 4.072 6 N 0.022 4.978 7 C -0.500 4.500 8 H 0.118 0.882 9 C -0.204 4.204 10 N -0.515 5.515 11 Si 0.830 3.170 12 H -0.190 1.190 13 H -0.195 1.195 14 H -0.184 1.184 15 C -0.091 4.091 16 C -0.168 4.168 17 C -0.138 4.138 18 C -0.195 4.195 19 C -0.052 4.052 20 C -0.167 4.167 21 C -0.123 4.123 22 H 0.039 0.961 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.153 0.847 26 H 0.041 0.959 27 H 0.096 0.904 28 H 0.170 0.830 29 H 0.093 0.907 30 H 0.120 0.880 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.086 0.914 34 H 0.101 0.899 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.844 0.184 -5.987 7.703 hybrid contribution 0.724 0.361 1.990 2.148 sum -4.121 0.544 -3.997 5.766 Atomic orbital electron populations 1.22251 0.86917 1.02338 1.00528 1.60498 1.08090 1.14108 1.50012 1.19890 0.88173 0.89338 0.99406 1.20032 0.94604 1.19119 0.91226 1.21879 0.82739 1.03736 0.98879 1.40310 1.05551 1.47566 1.04395 1.20107 0.90079 1.50519 0.89246 0.88179 1.26436 1.01122 0.93812 0.99027 1.69989 1.27313 1.38297 1.15888 0.84696 0.76994 0.78631 0.76642 1.18951 1.19535 1.18434 1.18987 0.96636 1.08096 0.85387 1.20079 0.96000 1.07151 0.93592 1.20864 0.97721 1.01895 0.93347 1.20873 0.91713 1.07235 0.99702 1.19592 0.97035 0.97896 0.90648 1.20858 0.92323 1.01794 1.01688 1.19001 0.91413 1.08009 0.93841 0.96136 0.91068 0.90604 0.84744 0.95941 0.90365 0.83004 0.90749 0.87986 0.84081 0.84175 0.91427 0.89948 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.70 127.69 1.37 2.08 16 2 N -0.70 -23.06 5.81 -541.22 -3.14 -26.20 16 3 C 0.16 5.90 5.05 85.56 0.43 6.33 16 4 C -0.24 -11.25 5.83 -18.56 -0.11 -11.36 16 5 C 0.06 3.30 9.81 82.99 0.81 4.11 16 6 N -0.31 -17.43 2.92 -342.89 -1.00 -18.43 16 7 C -0.37 -20.52 9.93 84.00 0.83 -19.69 16 8 H 0.10 5.33 7.85 -2.91 -0.02 5.31 16 9 C 0.00 0.03 5.35 84.90 0.45 0.49 16 10 N -0.88 -46.92 10.84 21.65 0.23 -46.69 16 11 Si 1.01 39.87 29.56 68.60 2.03 41.90 16 12 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 13 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 14 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 15 C 0.02 1.00 6.75 38.93 0.26 1.26 16 16 C -0.15 -6.75 9.95 22.36 0.22 -6.53 16 17 C -0.12 -4.48 10.02 22.31 0.22 -4.26 16 18 C -0.18 -6.35 9.69 22.28 0.22 -6.13 16 19 C -0.05 -2.04 5.91 -19.67 -0.12 -2.16 16 20 C -0.11 -3.47 9.27 71.24 0.66 -2.81 16 21 C -0.12 -5.55 6.14 -20.17 -0.12 -5.68 16 22 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 23 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.34 11.96 8.81 -89.69 -0.79 11.17 16 26 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.08 2.65 6.97 -2.39 -0.02 2.63 16 28 H 0.15 8.22 6.34 -2.91 -0.02 8.20 16 29 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 30 H 0.10 4.51 8.06 -2.91 -0.02 4.48 16 31 H 0.14 4.21 8.06 -2.91 -0.02 4.18 16 32 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.08 2.72 5.15 -2.39 -0.01 2.70 16 35 H 0.07 1.93 8.09 -2.39 -0.02 1.91 16 Total: -1.00 -61.60 291.23 3.56 -58.04 By element: Atomic # 1 Polarization: 35.43 SS G_CDS: 0.30 Total: 35.73 kcal Atomic # 6 Polarization: -49.48 SS G_CDS: 5.14 Total: -44.34 kcal Atomic # 7 Polarization: -87.42 SS G_CDS: -3.91 Total: -91.32 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -61.60 3.56 -58.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084842822.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.357 kcal (2) G-P(sol) polarization free energy of solvation -61.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds