Wall clock time and date at job start Mon Mar 30 2020 06:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46615 * 2 1 4 4 N 1.46894 * 109.47267 * 240.00517 * 2 1 3 5 5 C 1.52999 * 109.47593 * 119.99768 * 2 1 3 6 6 C 1.50697 * 109.47417 * 185.00189 * 5 2 1 7 7 C 1.34299 * 126.47484 * 264.69125 * 6 5 2 8 8 N 1.37006 * 109.93190 * 179.86925 * 7 6 5 9 9 C 1.37203 * 125.09352 * 180.16690 * 8 7 6 10 10 H 1.08001 * 119.99910 * 201.23118 * 9 8 7 11 11 C 1.38857 * 120.00055 * 21.23567 * 9 8 7 12 12 N 1.31445 * 119.99690 * 10.69400 * 11 9 8 13 13 Si 1.86800 * 120.00155 * 190.70049 * 11 9 8 14 14 H 1.48500 * 109.46794 * 59.99551 * 13 11 9 15 15 H 1.48499 * 109.46981 * 179.97438 * 13 11 9 16 16 H 1.48494 * 109.46889 * 299.99740 * 13 11 9 17 17 C 1.38113 * 109.81949 * 0.40343 * 8 7 6 18 18 C 1.38956 * 133.42809 * 179.73920 * 17 8 7 19 19 C 1.37895 * 119.92435 * 180.02562 * 18 17 8 20 20 C 1.38749 * 120.64975 * 359.97438 * 19 18 17 21 21 C 1.37786 * 120.36181 * 359.97438 * 20 19 18 22 22 C 1.39512 * 119.65528 * 0.02562 * 21 20 19 23 23 H 1.08996 * 109.47423 * 299.99765 * 1 2 3 24 24 H 1.09003 * 109.46615 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47412 * 60.00266 * 1 2 3 26 26 H 1.00906 * 110.99899 * 299.99394 * 4 2 1 27 27 H 1.00894 * 111.00646 * 63.94793 * 4 2 1 28 28 H 1.09005 * 109.47009 * 305.00329 * 5 2 1 29 29 H 1.09004 * 109.47017 * 64.99942 * 5 2 1 30 30 H 1.07997 * 125.03687 * 0.02562 * 7 6 5 31 31 H 0.97002 * 119.99668 * 179.97438 * 12 11 9 32 32 H 1.07995 * 120.03435 * 359.97438 * 18 17 8 33 33 H 1.08002 * 119.67589 * 179.97438 * 19 18 17 34 34 H 1.07996 * 119.81977 * 179.97438 * 20 19 18 35 35 H 1.07995 * 120.16919 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0401 -0.7212 1.2492 6 6 3.5420 -0.6148 1.3127 7 6 4.4261 -1.5229 0.8687 8 7 5.7031 -1.0805 1.0939 9 6 6.8450 -1.7633 0.7589 10 1 7.7765 -1.5338 1.2551 11 6 6.8032 -2.7492 -0.2180 12 7 5.7320 -2.8869 -0.9672 13 14 8.2691 -3.8798 -0.4674 14 1 8.5356 -4.6286 0.7870 15 1 7.9742 -4.8383 -1.5625 16 1 9.4625 -3.0715 -0.8244 17 6 5.6687 0.1534 1.7134 18 6 6.6538 1.0263 2.1592 19 6 6.2985 2.2178 2.7555 20 6 4.9629 2.5577 2.9163 21 6 3.9705 1.7071 2.4805 22 6 4.3142 0.4980 1.8752 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 -0.8900 26 1 1.6962 -1.6479 -1.2228 27 1 1.7502 -0.1989 -2.0372 28 1 1.6054 -0.2616 2.1370 29 1 1.7517 -1.7715 1.2056 30 1 4.1688 -2.4617 0.4010 31 1 5.7029 -3.5754 -1.6499 32 1 7.6963 0.7714 2.0394 33 1 7.0674 2.8930 3.1009 34 1 4.6999 3.4941 3.3856 35 1 2.9319 1.9746 2.6076 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085586558.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:26 Heat of formation + Delta-G solvation = 29.371372 kcal Electronic energy + Delta-G solvation = -17400.572530 eV Core-core repulsion = 14783.477778 eV Total energy + Delta-G solvation = -2617.094752 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.70545 -37.70869 -37.46611 -34.88084 -32.94404 -30.52657 -29.98276 -29.42706 -27.97783 -25.66840 -23.14370 -22.15032 -21.76117 -20.28849 -19.29484 -17.50288 -16.83619 -16.70533 -16.21524 -15.85330 -15.31417 -15.06160 -14.69681 -14.51358 -14.23822 -13.80823 -13.58616 -13.29393 -13.08098 -12.92594 -12.79923 -12.57637 -12.34849 -12.12063 -12.03865 -11.92488 -11.61343 -11.24617 -10.88282 -10.07926 -9.24836 -8.75815 -8.58459 -8.14161 -6.11946 0.60968 1.07477 1.35703 1.43590 1.48595 2.14796 2.33877 3.01519 3.19315 3.40934 3.85723 4.18156 4.24246 4.36205 4.41272 4.44314 4.59835 4.67301 4.85313 4.87558 4.96578 5.05220 5.08869 5.17372 5.21920 5.38420 5.45478 5.48941 5.51395 5.63688 5.89566 5.93245 6.08308 6.43925 6.57454 6.61179 6.69032 6.83825 7.27653 7.69441 8.51467 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017080 B = 0.009631 C = 0.006437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.989205 B = 2906.607208 C = 4348.497585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 H 0.057 0.943 4 N -0.847 5.847 5 C -0.014 4.014 6 C -0.225 4.225 7 C 0.079 3.921 8 N -0.318 5.318 9 C -0.379 4.379 10 H 0.096 0.904 11 C 0.001 3.999 12 N -0.869 5.869 13 Si 1.006 2.994 14 H -0.264 1.264 15 H -0.269 1.269 16 H -0.265 1.265 17 C 0.016 3.984 18 C -0.142 4.142 19 C -0.127 4.127 20 C -0.170 4.170 21 C -0.086 4.086 22 C -0.136 4.136 23 H 0.068 0.932 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.338 0.662 27 H 0.338 0.662 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.150 0.850 31 H 0.280 0.720 32 H 0.100 0.900 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.738 3.833 2.154 8.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.012 4.012 3 H 0.075 0.925 4 N -0.377 5.377 5 C -0.053 4.053 6 C -0.232 4.232 7 C -0.054 4.054 8 N 0.018 4.982 9 C -0.506 4.506 10 H 0.114 0.886 11 C -0.204 4.204 12 N -0.501 5.501 13 Si 0.827 3.173 14 H -0.188 1.188 15 H -0.193 1.193 16 H -0.190 1.190 17 C -0.095 4.095 18 C -0.162 4.162 19 C -0.146 4.146 20 C -0.190 4.190 21 C -0.105 4.105 22 C -0.142 4.142 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.151 0.849 27 H 0.151 0.849 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.167 0.833 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.782 3.616 2.150 7.150 hybrid contribution -0.044 -0.842 -0.758 1.134 sum -5.826 2.774 1.391 6.601 Atomic orbital electron populations 1.22552 0.95982 1.02225 1.02600 1.21320 0.92283 0.97188 0.90427 0.92512 1.58617 1.68699 1.06152 1.04192 1.19736 0.89029 0.99609 0.96887 1.20031 0.95027 0.95709 1.12401 1.21728 0.82227 1.00145 1.01265 1.40327 1.05719 1.11523 1.40652 1.19988 0.89019 1.19100 1.22509 0.88608 1.26399 1.01850 0.98993 0.93203 1.70057 1.29916 1.31767 1.18320 0.84822 0.76685 0.77268 0.78534 1.18845 1.19346 1.19006 1.18967 0.96443 0.88682 1.05393 1.20114 0.96639 0.95528 1.03952 1.20862 0.97239 0.95554 1.00983 1.20955 0.92217 1.00796 1.05019 1.20589 0.99503 0.92198 0.98195 1.19304 0.91880 0.97209 1.05834 0.91338 0.92313 0.92216 0.84864 0.84889 0.90934 0.92498 0.83271 0.90972 0.88204 0.84229 0.83872 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.96 9.48 71.98 0.68 -3.27 16 2 C 0.10 3.12 3.34 44.92 0.15 3.27 16 3 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 4 N -0.85 -28.45 8.95 -168.69 -1.51 -29.96 16 5 C -0.01 -0.51 5.39 29.85 0.16 -0.35 16 6 C -0.23 -10.51 5.30 -18.56 -0.10 -10.61 16 7 C 0.08 4.24 9.81 82.98 0.81 5.05 16 8 N -0.32 -17.98 2.92 -342.89 -1.00 -18.98 16 9 C -0.38 -21.37 9.93 84.00 0.83 -20.54 16 10 H 0.10 5.23 7.85 -2.91 -0.02 5.21 16 11 C 0.00 0.06 5.35 84.90 0.45 0.52 16 12 N -0.87 -47.05 10.85 21.65 0.23 -46.81 16 13 Si 1.01 40.77 29.57 68.60 2.03 42.80 16 14 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 15 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 16 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 17 C 0.02 0.85 6.75 38.93 0.26 1.11 16 18 C -0.14 -6.56 9.95 22.36 0.22 -6.34 16 19 C -0.13 -4.79 10.02 22.31 0.22 -4.57 16 20 C -0.17 -6.02 10.03 22.29 0.22 -5.80 16 21 C -0.09 -3.40 10.10 22.47 0.23 -3.17 16 22 C -0.14 -6.50 6.35 -20.17 -0.13 -6.63 16 23 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.34 10.64 9.00 -89.69 -0.81 9.83 16 27 H 0.34 9.89 9.07 -89.70 -0.81 9.08 16 28 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.15 8.27 6.35 -2.91 -0.02 8.25 16 31 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 32 H 0.10 4.49 8.06 -2.91 -0.02 4.47 16 33 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 34 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 35 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -64.33 297.06 3.26 -61.07 By element: Atomic # 1 Polarization: 43.73 SS G_CDS: -0.52 Total: 43.20 kcal Atomic # 6 Polarization: -55.35 SS G_CDS: 4.03 Total: -51.32 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -2.27 Total: -95.75 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -64.33 3.26 -61.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085586558.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.443 kcal (2) G-P(sol) polarization free energy of solvation -64.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds