Wall clock time and date at job start Mon Mar 30 2020 06:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47113 * 2 1 4 4 H 1.09007 * 109.46888 * 304.99848 * 3 2 1 5 5 C 1.53001 * 109.47426 * 64.99670 * 3 2 1 6 6 N 1.46501 * 109.47388 * 184.99943 * 3 2 1 7 7 C 1.37844 * 126.53537 * 299.97338 * 6 3 2 8 8 C 1.40196 * 125.30601 * 359.97438 * 7 6 3 9 9 H 1.07998 * 119.99802 * 0.02562 * 8 7 6 10 10 C 1.40352 * 119.99762 * 179.97438 * 8 7 6 11 11 N 1.30579 * 119.99909 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99732 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47058 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47319 * 120.00010 * 12 10 8 15 15 H 1.48497 * 109.47077 * 240.00322 * 12 10 8 16 16 N 1.32461 * 109.39229 * 180.02562 * 7 6 3 17 17 C 1.33973 * 109.78059 * 0.02562 * 16 7 6 18 18 C 1.40532 * 133.19634 * 179.97438 * 17 16 7 19 19 C 1.36355 * 119.85015 * 179.97438 * 18 17 16 20 20 C 1.39041 * 120.75939 * 359.97438 * 19 18 17 21 21 C 1.37961 * 120.57213 * 0.02562 * 20 19 18 22 22 C 1.37966 * 126.53643 * 119.99556 * 6 3 2 23 23 H 1.09002 * 109.47369 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47407 * 300.00205 * 1 2 3 25 25 H 1.08999 * 109.47396 * 60.00539 * 1 2 3 26 26 H 1.09000 * 109.47407 * 239.99795 * 2 1 3 27 27 H 1.08999 * 109.47396 * 119.99461 * 2 1 3 28 28 H 1.08998 * 109.47189 * 180.02562 * 5 3 2 29 29 H 1.09008 * 109.47229 * 300.00512 * 5 3 2 30 30 H 1.08997 * 109.46908 * 60.00279 * 5 3 2 31 31 H 0.97007 * 119.99600 * 180.02562 * 11 10 8 32 32 H 1.08006 * 120.07641 * 359.97438 * 18 17 16 33 33 H 1.08001 * 119.62195 * 179.72324 * 19 18 17 34 34 H 1.07996 * 119.71685 * 179.97438 * 20 19 18 35 35 H 1.08004 * 120.11978 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 1.6352 2.1267 1.3073 6 7 3.5000 1.4443 -0.1204 7 6 4.3960 0.8644 0.7519 8 6 4.0547 0.1655 1.9183 9 1 3.0169 0.0480 2.1932 10 6 5.0616 -0.3823 2.7282 11 7 6.3163 -0.2406 2.3955 12 14 4.6067 -1.3141 4.2820 13 1 3.1295 -1.3327 4.4335 14 1 5.1129 -2.7071 4.1899 15 1 5.2159 -0.6427 5.4581 16 7 5.6300 1.0713 0.3169 17 6 5.5970 1.7741 -0.8231 18 6 6.5966 2.2559 -1.6854 19 6 6.2495 2.9586 -2.8013 20 6 4.9141 3.2056 -3.0993 21 6 3.9130 2.7440 -2.2697 22 6 4.2404 2.0272 -1.1281 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5137 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 1.9981 3.1544 1.3071 29 1 0.5488 2.1253 1.3969 30 1 2.0698 1.5877 2.1491 31 1 7.0122 -0.6195 2.9551 32 1 7.6374 2.0701 -1.4648 33 1 7.0209 3.3310 -3.4590 34 1 4.6582 3.7644 -3.9873 35 1 2.8780 2.9398 -2.5085 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110858832.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:12 Heat of formation + Delta-G solvation = 37.127036 kcal Electronic energy + Delta-G solvation = -17698.661828 eV Core-core repulsion = 15081.903387 eV Total energy + Delta-G solvation = -2616.758441 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.21655 -38.23879 -36.77286 -35.28508 -33.01778 -31.01157 -30.41364 -29.36504 -27.66830 -25.47112 -23.13041 -22.65080 -22.40575 -20.35074 -18.91484 -17.82434 -17.47175 -16.53396 -15.87413 -15.83010 -15.61215 -14.90887 -14.63688 -14.44228 -14.31814 -13.69374 -13.41359 -13.12749 -13.03783 -12.86631 -12.63327 -12.49684 -12.40277 -12.24296 -11.89944 -11.83956 -11.68948 -11.34820 -11.06648 -10.73733 -9.78079 -8.99636 -8.59920 -8.47291 -6.50185 0.52358 1.02266 1.40597 1.43865 1.57254 2.15267 2.37187 2.41444 3.19986 3.65121 3.76141 3.95236 4.04834 4.20900 4.32889 4.40300 4.46035 4.55636 4.64099 4.72162 4.81481 4.89045 4.95676 5.06141 5.12442 5.14738 5.20582 5.25108 5.41684 5.48220 5.60819 5.75514 5.92546 6.03860 6.20404 6.26057 6.57591 6.82608 7.26864 8.12037 8.45690 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.018775 B = 0.010157 C = 0.006988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.015428 B = 2755.950249 C = 4005.960740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.134 4.134 3 C 0.151 3.849 4 H 0.091 0.909 5 C -0.160 4.160 6 N -0.535 5.535 7 C 0.398 3.602 8 C -0.460 4.460 9 H 0.111 0.889 10 C 0.027 3.973 11 N -0.771 5.771 12 Si 0.993 3.007 13 H -0.242 1.242 14 H -0.269 1.269 15 H -0.269 1.269 16 N -0.590 5.590 17 C 0.051 3.949 18 C -0.151 4.151 19 C -0.118 4.118 20 C -0.164 4.164 21 C -0.109 4.109 22 C -0.024 4.024 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.040 0.960 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.281 0.719 32 H 0.101 0.899 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.348 1.725 -2.582 10.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C 0.048 3.952 4 H 0.109 0.891 5 C -0.218 4.218 6 N -0.230 5.230 7 C 0.159 3.841 8 C -0.497 4.497 9 H 0.129 0.871 10 C -0.195 4.195 11 N -0.394 5.394 12 Si 0.812 3.188 13 H -0.164 1.164 14 H -0.194 1.194 15 H -0.194 1.194 16 N -0.315 5.315 17 C -0.074 4.074 18 C -0.172 4.172 19 C -0.138 4.138 20 C -0.184 4.184 21 C -0.131 4.131 22 C -0.132 4.132 23 H 0.085 0.915 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.119 0.881 33 H 0.161 0.839 34 H 0.167 0.833 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.563 1.415 -2.131 9.899 hybrid contribution -0.088 -0.175 0.252 0.319 sum -9.650 1.239 -1.878 9.909 Atomic orbital electron populations 1.21730 0.92003 1.02859 1.02924 1.21908 0.98244 0.95066 1.01974 1.21221 0.76559 0.97771 0.99634 0.89142 1.22225 1.02981 0.99587 0.96965 1.45892 1.06463 1.49496 1.21119 1.20732 0.82322 0.90466 0.90614 1.19116 0.95889 1.31324 1.03380 0.87119 1.27010 0.93949 0.96030 1.02480 1.70149 1.01690 1.31869 1.35734 0.85000 0.80544 0.77560 0.75692 1.16421 1.19381 1.19354 1.71246 1.20521 1.26927 1.12833 1.20124 0.92907 0.99016 0.95389 1.20055 0.96668 1.04004 0.96492 1.20650 0.97183 0.99520 0.96432 1.20874 0.91746 1.04750 1.01067 1.20040 0.99912 1.00274 0.92830 1.19367 0.92981 1.05590 0.95280 0.91496 0.90962 0.91689 0.94091 0.91571 0.94049 0.87955 0.92050 0.90877 0.88066 0.83925 0.83280 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 9.67 71.98 0.70 -2.38 16 2 C -0.13 -4.39 5.34 30.59 0.16 -4.22 16 3 C 0.15 5.44 2.91 44.99 0.13 5.58 16 4 H 0.09 2.91 7.61 -2.38 -0.02 2.89 16 5 C -0.16 -5.17 8.95 71.98 0.64 -4.53 16 6 N -0.53 -25.70 2.70 -490.56 -1.33 -27.03 16 7 C 0.40 22.26 7.02 133.70 0.94 23.20 16 8 C -0.46 -23.85 7.54 23.26 0.18 -23.67 16 9 H 0.11 5.10 4.32 -2.91 -0.01 5.09 16 10 C 0.03 1.39 5.50 85.39 0.47 1.86 16 11 N -0.77 -43.31 11.85 21.89 0.26 -43.05 16 12 Si 0.99 37.19 29.56 68.60 2.03 39.21 16 13 H -0.24 -8.21 7.11 99.48 0.71 -7.51 16 14 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 15 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 16 N -0.59 -36.30 9.33 -186.53 -1.74 -38.04 16 17 C 0.05 2.85 7.21 40.14 0.29 3.14 16 18 C -0.15 -7.23 10.07 22.39 0.23 -7.01 16 19 C -0.12 -4.49 9.96 22.02 0.22 -4.27 16 20 C -0.16 -5.82 10.04 22.40 0.22 -5.60 16 21 C -0.11 -4.36 9.88 22.32 0.22 -4.14 16 22 C -0.02 -1.18 6.88 39.05 0.27 -0.91 16 23 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.07 1.42 6.56 -2.39 -0.02 1.40 16 25 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.07 2.43 5.65 -2.39 -0.01 2.42 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.10 2.41 6.57 -2.38 -0.02 2.40 16 30 H 0.06 2.24 5.53 -2.39 -0.01 2.22 16 31 H 0.28 14.27 8.29 -92.70 -0.77 13.50 16 32 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 33 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 34 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 35 H 0.12 4.15 7.74 -2.91 -0.02 4.13 16 Total: -1.00 -70.24 284.74 4.98 -65.26 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 1.09 Total: 26.62 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 4.67 Total: -22.96 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -2.81 Total: -108.12 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.21 kcal Total: -70.24 4.98 -65.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110858832.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.384 kcal (2) G-P(sol) polarization free energy of solvation -70.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds