Wall clock time and date at job start Mon Mar 30 2020 06:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47319 * 2 1 4 4 H 1.09001 * 109.46591 * 55.00604 * 3 2 1 5 5 C 1.52993 * 109.47082 * 295.00460 * 3 2 1 6 6 N 1.46492 * 109.46941 * 175.00110 * 3 2 1 7 7 C 1.37860 * 126.53876 * 60.66958 * 6 3 2 8 8 C 1.40186 * 125.29983 * 359.45888 * 7 6 3 9 9 H 1.08001 * 120.00579 * 0.51721 * 8 7 6 10 10 C 1.40350 * 119.99996 * 180.52183 * 8 7 6 11 11 N 1.30588 * 119.99672 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00224 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47160 * 60.00173 * 12 10 8 14 14 H 1.48506 * 109.47295 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47311 * 300.00162 * 12 10 8 16 16 N 1.32461 * 109.38975 * 179.97438 * 7 6 3 17 17 C 1.33975 * 109.78514 * 359.56548 * 16 7 6 18 18 C 1.40530 * 133.19490 * 180.02562 * 17 16 7 19 19 C 1.36359 * 119.84836 * 179.71817 * 18 17 16 20 20 C 1.39042 * 120.75589 * 0.26227 * 19 18 17 21 21 C 1.37964 * 120.57759 * 359.96645 * 20 19 18 22 22 C 1.37966 * 126.53780 * 240.00022 * 6 3 2 23 23 H 1.08997 * 109.47180 * 59.99299 * 1 2 3 24 24 H 1.08996 * 109.47591 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46909 * 300.00035 * 1 2 3 26 26 H 1.09003 * 109.46909 * 239.99965 * 2 1 3 27 27 H 1.08997 * 109.47180 * 120.00700 * 2 1 3 28 28 H 1.09002 * 109.47073 * 299.99856 * 5 3 2 29 29 H 1.08998 * 109.47665 * 60.00106 * 5 3 2 30 30 H 1.09010 * 109.46914 * 180.02562 * 5 3 2 31 31 H 0.97005 * 120.00246 * 180.02562 * 11 10 8 32 32 H 1.08002 * 120.08044 * 0.02562 * 18 17 16 33 33 H 1.08000 * 119.62292 * 180.23250 * 19 18 17 34 34 H 1.08003 * 119.71240 * 179.97438 * 20 19 18 35 35 H 1.07994 * 120.12200 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 1.6353 2.1265 -1.3072 6 7 3.5001 1.4441 0.1203 7 6 4.3967 0.8747 -0.7584 8 6 4.0554 0.1790 -1.9267 9 1 3.0177 0.0629 -2.2025 10 6 5.0623 -0.3668 -2.7379 11 7 6.3170 -0.2270 -2.4041 12 14 4.6075 -1.2944 -4.2942 13 1 3.8605 -0.3927 -5.2075 14 1 5.8437 -1.7681 -4.9672 15 1 3.7569 -2.4604 -3.9448 16 7 5.6304 1.0777 -0.3211 17 6 5.5972 1.7755 0.8221 18 6 6.5966 2.2518 1.6877 19 6 6.2496 2.9553 2.8031 20 6 4.9143 3.2043 3.0998 21 6 3.9132 2.7441 2.2696 22 6 4.2405 2.0270 1.1281 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.0698 1.5875 -2.1491 29 1 0.5490 2.1253 -1.3968 30 1 1.9991 3.1541 -1.3074 31 1 7.0130 -0.6039 -2.9650 32 1 7.6374 2.0654 1.4675 33 1 7.0208 3.3229 3.4638 34 1 4.6585 3.7631 3.9880 35 1 2.8784 2.9421 2.5069 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110858835.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:20 Heat of formation + Delta-G solvation = 53.417314 kcal Electronic energy + Delta-G solvation = -17696.990897 eV Core-core repulsion = 15080.938856 eV Total energy + Delta-G solvation = -2616.052041 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.44779 -36.64515 -35.18916 -33.47368 -31.39523 -29.47547 -28.63300 -27.82147 -25.85524 -24.14914 -21.33975 -21.12956 -20.68316 -18.69438 -17.10710 -16.17517 -15.80151 -14.82952 -14.50888 -14.18894 -13.98673 -13.33539 -13.16436 -12.79014 -12.62669 -12.29314 -11.96966 -11.71075 -11.48570 -11.37491 -11.26818 -10.96524 -10.85104 -10.69701 -10.39984 -10.28375 -10.16224 -9.82753 -9.31148 -8.95855 -7.87237 -7.19701 -6.82103 -6.65497 -4.59921 2.28053 2.74020 3.00194 3.01678 3.03217 3.78089 4.04491 4.16132 4.95669 5.14733 5.33542 5.50375 5.55637 5.63847 5.69743 5.77172 5.86807 5.88147 6.01712 6.11063 6.23819 6.28232 6.39322 6.43560 6.53016 6.64408 6.72772 6.80845 6.91422 7.06743 7.29499 7.51725 7.63832 7.78437 7.94384 8.01092 8.35483 8.66230 9.06903 9.98712 10.23697 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.018768 B = 0.010158 C = 0.006987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.532180 B = 2755.808161 C = 4006.387734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.161 3.839 4 H 0.073 0.927 5 C -0.169 4.169 6 N -0.534 5.534 7 C 0.424 3.576 8 C -0.442 4.442 9 H 0.093 0.907 10 C 0.077 3.923 11 N -0.716 5.716 12 Si 0.913 3.087 13 H -0.264 1.264 14 H -0.275 1.275 15 H -0.264 1.264 16 N -0.538 5.538 17 C 0.108 3.892 18 C -0.129 4.129 19 C -0.125 4.125 20 C -0.182 4.182 21 C -0.105 4.105 22 C -0.004 4.004 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.086 0.914 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.279 0.721 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.720 0.976 1.638 7.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C 0.057 3.943 4 H 0.091 0.909 5 C -0.227 4.227 6 N -0.230 5.230 7 C 0.188 3.812 8 C -0.479 4.479 9 H 0.110 0.890 10 C -0.151 4.151 11 N -0.338 5.338 12 Si 0.736 3.264 13 H -0.188 1.188 14 H -0.200 1.200 15 H -0.188 1.188 16 N -0.261 5.261 17 C -0.020 4.020 18 C -0.151 4.151 19 C -0.145 4.145 20 C -0.203 4.203 21 C -0.126 4.126 22 C -0.112 4.112 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.891 0.632 1.149 7.015 hybrid contribution -0.947 -0.068 -0.186 0.967 sum -7.838 0.564 0.963 7.917 Atomic orbital electron populations 1.21779 0.95734 1.01467 1.01495 1.21981 0.95176 0.96693 1.03972 1.20790 0.79121 0.96264 0.98131 0.90860 1.22294 1.00588 1.01044 0.98763 1.45668 1.04825 1.50767 1.21768 1.20374 0.81900 0.89547 0.89427 1.18596 0.94738 1.31219 1.03320 0.88970 1.25881 0.94423 0.95647 0.99130 1.69972 1.00167 1.29815 1.33882 0.86296 0.79077 0.80168 0.80819 1.18831 1.19999 1.18831 1.71390 1.18389 1.25338 1.10985 1.19576 0.90595 0.97127 0.94659 1.19772 0.97190 1.02825 0.95282 1.20201 0.95438 1.01338 0.97571 1.20275 0.92583 1.06802 1.00629 1.19585 0.97738 1.01260 0.94047 1.18920 0.93559 1.04687 0.93989 0.92419 0.92748 0.93207 0.89584 0.92049 0.90055 0.92047 0.92871 0.90991 0.87477 0.87886 0.87933 0.88774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.67 37.16 0.36 -1.51 16 2 C -0.14 -2.36 5.35 -26.73 -0.14 -2.50 16 3 C 0.16 2.99 2.91 -67.94 -0.20 2.79 16 4 H 0.07 1.26 7.61 -51.93 -0.40 0.87 16 5 C -0.17 -2.84 8.94 37.15 0.33 -2.51 16 6 N -0.53 -12.58 2.70 -106.42 -0.29 -12.87 16 7 C 0.42 11.32 7.02 -155.67 -1.09 10.23 16 8 C -0.44 -11.02 7.54 -38.06 -0.29 -11.30 16 9 H 0.09 2.07 4.33 -52.49 -0.23 1.84 16 10 C 0.08 1.88 5.50 -17.29 -0.10 1.78 16 11 N -0.72 -18.99 11.85 55.57 0.66 -18.33 16 12 Si 0.91 17.77 29.56 -169.99 -5.03 12.75 16 13 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 14 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 15 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 16 N -0.54 -15.54 9.33 -10.31 -0.10 -15.64 16 17 C 0.11 2.88 7.21 -84.89 -0.61 2.26 16 18 C -0.13 -3.03 10.07 -39.40 -0.40 -3.43 16 19 C -0.12 -2.52 9.96 -39.96 -0.40 -2.92 16 20 C -0.18 -3.57 10.04 -39.38 -0.40 -3.96 16 21 C -0.10 -2.21 9.88 -39.50 -0.39 -2.60 16 22 C 0.00 -0.09 6.88 -83.75 -0.58 -0.67 16 23 H 0.06 0.68 6.56 -51.93 -0.34 0.34 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.09 1.57 5.69 -51.93 -0.30 1.28 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 28 H 0.08 1.49 5.48 -51.93 -0.28 1.21 16 29 H 0.06 0.82 6.57 -51.93 -0.34 0.48 16 30 H 0.05 0.93 8.14 -51.92 -0.42 0.50 16 31 H 0.28 6.70 8.29 -40.82 -0.34 6.37 16 32 H 0.11 2.39 8.06 -52.49 -0.42 1.97 16 33 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 34 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 35 H 0.09 1.75 7.74 -52.49 -0.41 1.34 16 LS Contribution 284.74 15.07 4.29 4.29 Total: -1.00 -29.71 284.74 -8.73 -38.44 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -4.38 Total: 5.70 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -3.89 Total: -14.34 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 0.28 Total: -46.84 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.71 -8.73 -38.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110858835.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.862 kcal (2) G-P(sol) polarization free energy of solvation -29.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds