Wall clock time and date at job start Mon Mar 30 2020 06:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47319 * 2 1 4 4 H 1.09001 * 109.46591 * 55.00604 * 3 2 1 5 5 C 1.52993 * 109.47082 * 295.00460 * 3 2 1 6 6 N 1.46492 * 109.46941 * 175.00110 * 3 2 1 7 7 C 1.37860 * 126.53876 * 60.66958 * 6 3 2 8 8 C 1.40186 * 125.29983 * 359.45888 * 7 6 3 9 9 H 1.08001 * 120.00579 * 0.51721 * 8 7 6 10 10 C 1.40350 * 119.99996 * 180.52183 * 8 7 6 11 11 N 1.30588 * 119.99672 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00224 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47160 * 60.00173 * 12 10 8 14 14 H 1.48506 * 109.47295 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47311 * 300.00162 * 12 10 8 16 16 N 1.32461 * 109.38975 * 179.97438 * 7 6 3 17 17 C 1.33975 * 109.78514 * 359.56548 * 16 7 6 18 18 C 1.40530 * 133.19490 * 180.02562 * 17 16 7 19 19 C 1.36359 * 119.84836 * 179.71817 * 18 17 16 20 20 C 1.39042 * 120.75589 * 0.26227 * 19 18 17 21 21 C 1.37964 * 120.57759 * 359.96645 * 20 19 18 22 22 C 1.37966 * 126.53780 * 240.00022 * 6 3 2 23 23 H 1.08997 * 109.47180 * 59.99299 * 1 2 3 24 24 H 1.08996 * 109.47591 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46909 * 300.00035 * 1 2 3 26 26 H 1.09003 * 109.46909 * 239.99965 * 2 1 3 27 27 H 1.08997 * 109.47180 * 120.00700 * 2 1 3 28 28 H 1.09002 * 109.47073 * 299.99856 * 5 3 2 29 29 H 1.08998 * 109.47665 * 60.00106 * 5 3 2 30 30 H 1.09010 * 109.46914 * 180.02562 * 5 3 2 31 31 H 0.97005 * 120.00246 * 180.02562 * 11 10 8 32 32 H 1.08002 * 120.08044 * 0.02562 * 18 17 16 33 33 H 1.08000 * 119.62292 * 180.23250 * 19 18 17 34 34 H 1.08003 * 119.71240 * 179.97438 * 20 19 18 35 35 H 1.07994 * 120.12200 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 1.6353 2.1265 -1.3072 6 7 3.5001 1.4441 0.1203 7 6 4.3967 0.8747 -0.7584 8 6 4.0554 0.1790 -1.9267 9 1 3.0177 0.0629 -2.2025 10 6 5.0623 -0.3668 -2.7379 11 7 6.3170 -0.2270 -2.4041 12 14 4.6075 -1.2944 -4.2942 13 1 3.8605 -0.3927 -5.2075 14 1 5.8437 -1.7681 -4.9672 15 1 3.7569 -2.4604 -3.9448 16 7 5.6304 1.0777 -0.3211 17 6 5.5972 1.7755 0.8221 18 6 6.5966 2.2518 1.6877 19 6 6.2496 2.9553 2.8031 20 6 4.9143 3.2043 3.0998 21 6 3.9132 2.7441 2.2696 22 6 4.2405 2.0270 1.1281 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.0698 1.5875 -2.1491 29 1 0.5490 2.1253 -1.3968 30 1 1.9991 3.1541 -1.3074 31 1 7.0130 -0.6039 -2.9650 32 1 7.6374 2.0654 1.4675 33 1 7.0208 3.3229 3.4638 34 1 4.6585 3.7631 3.9880 35 1 2.8784 2.9421 2.5069 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110858835.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:20 Heat of formation + Delta-G solvation = 37.199107 kcal Electronic energy + Delta-G solvation = -17697.694172 eV Core-core repulsion = 15080.938856 eV Total energy + Delta-G solvation = -2616.755316 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -42.21469 -38.23821 -36.77282 -35.28300 -33.01752 -31.01491 -30.41041 -29.36207 -27.66691 -25.47243 -23.12880 -22.64914 -22.40554 -20.35034 -18.91058 -17.82322 -17.47008 -16.53743 -15.87799 -15.82929 -15.61063 -14.90852 -14.63601 -14.42952 -14.31601 -13.69885 -13.43016 -13.13074 -12.99863 -12.85816 -12.62894 -12.49732 -12.39768 -12.22229 -11.99701 -11.83473 -11.68735 -11.35148 -11.03712 -10.73454 -9.77931 -8.99643 -8.59904 -8.46860 -6.50140 0.52618 1.02422 1.40443 1.46702 1.54389 2.15426 2.37318 2.41609 3.20076 3.65226 3.76069 3.95299 4.04814 4.20876 4.32908 4.40281 4.45963 4.55604 4.64088 4.71948 4.81482 4.88975 4.95670 5.06083 5.12453 5.14708 5.20475 5.25041 5.41657 5.48218 5.60821 5.75435 5.92597 6.03743 6.20021 6.26127 6.57547 6.82557 7.26927 8.12110 8.45700 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.018768 B = 0.010158 C = 0.006987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.532180 B = 2755.808161 C = 4006.387734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.151 3.849 4 H 0.090 0.910 5 C -0.160 4.160 6 N -0.535 5.535 7 C 0.398 3.602 8 C -0.461 4.461 9 H 0.111 0.889 10 C 0.028 3.972 11 N -0.771 5.771 12 Si 0.993 3.007 13 H -0.252 1.252 14 H -0.274 1.274 15 H -0.253 1.253 16 N -0.590 5.590 17 C 0.052 3.948 18 C -0.151 4.151 19 C -0.118 4.118 20 C -0.164 4.164 21 C -0.109 4.109 22 C -0.024 4.024 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.040 0.960 28 H 0.061 0.939 29 H 0.102 0.898 30 H 0.040 0.960 31 H 0.281 0.719 32 H 0.101 0.899 33 H 0.143 0.857 34 H 0.149 0.851 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.304 1.701 2.552 10.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.172 4.172 3 C 0.048 3.952 4 H 0.109 0.891 5 C -0.218 4.218 6 N -0.230 5.230 7 C 0.159 3.841 8 C -0.498 4.498 9 H 0.129 0.871 10 C -0.194 4.194 11 N -0.394 5.394 12 Si 0.812 3.188 13 H -0.176 1.176 14 H -0.198 1.198 15 H -0.176 1.176 16 N -0.315 5.315 17 C -0.074 4.074 18 C -0.172 4.172 19 C -0.138 4.138 20 C -0.185 4.185 21 C -0.131 4.131 22 C -0.132 4.132 23 H 0.091 0.909 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.121 0.879 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.119 0.881 33 H 0.161 0.839 34 H 0.167 0.833 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.508 1.383 2.103 9.836 hybrid contribution -0.119 -0.167 -0.249 0.323 sum -9.628 1.216 1.854 9.879 Atomic orbital electron populations 1.21731 0.91987 1.02855 1.02941 1.21902 0.98246 0.95052 1.01950 1.21217 0.76569 0.97770 0.99638 0.89145 1.22231 1.02998 0.99585 0.96977 1.45895 1.06439 1.49842 1.20819 1.20718 0.82317 0.90523 0.90536 1.19053 0.95885 1.31501 1.03350 0.87150 1.27007 0.93937 0.95985 1.02509 1.70138 1.01659 1.31816 1.35809 0.85108 0.78847 0.78854 0.76033 1.17567 1.19826 1.17649 1.71245 1.20527 1.27066 1.12703 1.20124 0.92903 0.99026 0.95364 1.20054 0.96671 1.04028 0.96477 1.20651 0.97181 0.99491 0.96458 1.20875 0.91748 1.04772 1.01057 1.20039 0.99909 1.00246 0.92863 1.19370 0.92982 1.05565 0.95314 0.90919 0.91504 0.91704 0.91602 0.94115 0.92018 0.87925 0.94082 0.90852 0.88064 0.83925 0.83286 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.67 71.98 0.70 -2.38 16 2 C -0.13 -4.37 5.35 30.60 0.16 -4.21 16 3 C 0.15 5.44 2.91 44.99 0.13 5.57 16 4 H 0.09 2.91 7.61 -2.39 -0.02 2.90 16 5 C -0.16 -5.19 8.94 71.98 0.64 -4.54 16 6 N -0.53 -25.73 2.70 -490.59 -1.33 -27.06 16 7 C 0.40 22.29 7.02 133.69 0.94 23.23 16 8 C -0.46 -23.90 7.54 23.26 0.18 -23.72 16 9 H 0.11 5.07 4.33 -2.91 -0.01 5.05 16 10 C 0.03 1.41 5.50 85.39 0.47 1.88 16 11 N -0.77 -43.31 11.85 21.89 0.26 -43.05 16 12 Si 0.99 37.14 29.56 68.60 2.03 39.17 16 13 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 14 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 15 H -0.25 -8.90 7.11 99.48 0.71 -8.20 16 16 N -0.59 -36.32 9.33 -186.52 -1.74 -38.06 16 17 C 0.05 2.87 7.21 40.14 0.29 3.16 16 18 C -0.15 -7.24 10.07 22.39 0.23 -7.01 16 19 C -0.12 -4.49 9.96 22.02 0.22 -4.27 16 20 C -0.16 -5.84 10.04 22.40 0.22 -5.61 16 21 C -0.11 -4.37 9.88 22.32 0.22 -4.15 16 22 C -0.02 -1.19 6.88 39.06 0.27 -0.92 16 23 H 0.07 1.42 6.56 -2.39 -0.02 1.40 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 2.42 5.69 -2.39 -0.01 2.40 16 27 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 2.25 5.48 -2.39 -0.01 2.23 16 29 H 0.10 2.41 6.57 -2.39 -0.02 2.40 16 30 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.28 14.36 8.29 -92.70 -0.77 13.59 16 32 H 0.10 4.76 8.06 -2.91 -0.02 4.74 16 33 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 34 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 35 H 0.12 4.16 7.74 -2.91 -0.02 4.13 16 Total: -1.00 -70.16 284.74 4.98 -65.18 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: 1.09 Total: 26.78 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 4.66 Total: -22.97 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -2.81 Total: -108.16 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Total: -70.16 4.98 -65.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110858835.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.384 kcal (2) G-P(sol) polarization free energy of solvation -70.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds