Wall clock time and date at job start Mon Mar 30 2020 06:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47226 * 2 1 4 4 H 1.08998 * 109.47213 * 174.71672 * 3 2 1 5 5 C 1.50699 * 109.47007 * 54.70708 * 3 2 1 6 6 H 1.07994 * 120.00634 * 239.99753 * 5 3 2 7 7 C 1.37882 * 119.99350 * 60.00434 * 5 3 2 8 8 N 1.31506 * 120.00490 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99443 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00155 * 9 7 5 11 11 H 1.48500 * 109.46898 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47579 * 299.99901 * 9 7 5 13 13 N 1.46906 * 109.46927 * 294.71154 * 3 2 1 14 14 C 1.46893 * 110.99777 * 177.71865 * 13 3 2 15 15 C 1.39036 * 110.99725 * 301.66949 * 13 3 2 16 16 C 1.38880 * 120.17224 * 305.37472 * 15 13 3 17 17 C 1.38020 * 120.06717 * 179.97438 * 16 15 13 18 18 C 1.38565 * 120.42406 * 359.97438 * 17 16 15 19 19 C 1.37794 * 120.34352 * 0.02562 * 18 17 16 20 20 C 1.39732 * 119.92348 * 0.25268 * 19 18 17 21 21 C 1.43197 * 120.20764 * 179.74445 * 20 19 18 22 22 N 4.49282 * 52.51864 * 294.25060 * 2 1 3 23 23 H 1.08997 * 109.47474 * 294.34474 * 1 2 3 24 24 H 1.09005 * 109.47053 * 54.34806 * 1 2 3 25 25 H 1.09007 * 109.47407 * 174.34073 * 1 2 3 26 26 H 1.09006 * 109.47245 * 239.99828 * 2 1 3 27 27 H 1.09001 * 109.47325 * 120.00237 * 2 1 3 28 28 H 0.97003 * 120.00683 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.47130 * 183.95757 * 14 13 3 30 30 H 1.09007 * 109.47259 * 303.95438 * 14 13 3 31 31 H 1.09000 * 109.47603 * 63.95344 * 14 13 3 32 32 H 1.07993 * 119.96706 * 0.02562 * 16 15 13 33 33 H 1.07993 * 119.78558 * 179.97438 * 17 16 15 34 34 H 1.07999 * 119.82917 * 180.02562 * 18 17 16 35 35 H 1.08004 * 120.03825 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1259 1.4439 0.0946 5 6 1.4335 2.1897 1.1597 6 1 0.8248 3.0635 0.9801 7 6 1.6560 1.7577 2.4501 8 7 2.3969 0.6935 2.6688 9 14 0.9048 2.6844 3.8876 10 1 -0.5747 2.6829 3.7588 11 1 1.2910 2.0221 5.1594 12 1 1.4002 4.0842 3.8875 13 7 1.6573 2.0971 -1.2582 14 6 2.0841 3.5026 -1.2713 15 6 2.1700 1.4105 -2.3531 16 6 3.5312 1.1485 -2.4378 17 6 4.0378 0.4662 -3.5254 18 6 3.1959 0.0374 -4.5390 19 6 1.8425 0.2880 -4.4725 20 6 1.3151 0.9827 -3.3808 21 6 -0.0896 1.2512 -3.3082 22 7 -1.2039 1.4644 -3.2507 23 1 -0.3634 0.4236 0.9362 24 1 -0.3633 0.5990 -0.8351 25 1 -0.3634 -1.0227 -0.1013 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.5537 0.3898 3.5766 29 1 1.7274 3.9822 -2.1828 30 1 1.6692 4.0165 -0.4041 31 1 3.1725 3.5523 -1.2367 32 1 4.1940 1.4783 -1.6515 33 1 5.0971 0.2654 -3.5868 34 1 3.6025 -0.4960 -5.3854 35 1 1.1909 -0.0481 -5.2655 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127570696.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:05 Heat of formation + Delta-G solvation = 63.360518 kcal Electronic energy + Delta-G solvation = -17766.672477 eV Core-core repulsion = 15151.051605 eV Total energy + Delta-G solvation = -2615.620872 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.79681 -36.67272 -35.83088 -33.25315 -31.04448 -30.98025 -29.56156 -26.39327 -25.31772 -23.37859 -23.13081 -21.40387 -19.30787 -18.40345 -16.19710 -15.90540 -15.27594 -15.14002 -14.42898 -14.05648 -13.76736 -13.39664 -13.18876 -12.72094 -12.45853 -12.33413 -12.17951 -11.98974 -11.70193 -11.51346 -11.20783 -11.10710 -10.91807 -10.71765 -10.31042 -10.13480 -9.81303 -9.45201 -8.98399 -8.72176 -8.49298 -8.32660 -7.48861 -6.07150 -4.10395 1.10129 1.54423 3.25583 3.29133 3.34011 3.37123 3.37966 4.21183 4.33625 4.40263 4.64696 5.08539 5.20536 5.25631 5.43535 5.66513 5.76353 6.01795 6.09801 6.15329 6.40328 6.44204 6.56539 6.58717 6.64210 6.68597 6.77351 6.94770 7.13127 7.26937 7.30075 7.60813 7.74148 7.78126 7.93502 8.05353 8.22244 8.51512 8.91992 9.53069 10.99627 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028230 B = 0.007838 C = 0.007239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.616337 B = 3571.673428 C = 3867.061256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.109 4.109 3 C 0.223 3.777 4 H 0.008 0.992 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 N -0.517 5.517 14 C 0.044 3.956 15 C 0.177 3.823 16 C -0.154 4.154 17 C -0.083 4.083 18 C -0.142 4.142 19 C -0.071 4.071 20 C -0.029 4.029 21 C 0.279 3.721 22 N -0.432 5.432 23 H 0.056 0.944 24 H 0.044 0.956 25 H 0.014 0.986 26 H 0.014 0.986 27 H 0.091 0.909 28 H 0.262 0.738 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.022 0.978 32 H 0.131 0.869 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.543 -0.744 -11.324 12.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.147 4.147 3 C 0.119 3.881 4 H 0.026 0.974 5 C -0.541 4.541 6 H 0.081 0.919 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.722 3.278 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.239 5.239 14 C -0.102 4.102 15 C 0.079 3.921 16 C -0.175 4.175 17 C -0.103 4.103 18 C -0.160 4.160 19 C -0.092 4.092 20 C -0.034 4.034 21 C -0.036 4.036 22 N -0.108 5.108 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.109 0.891 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.040 0.960 32 H 0.149 0.851 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.356 -0.510 -11.060 11.320 hybrid contribution 0.948 0.276 1.033 1.429 sum 3.304 -0.234 -10.027 10.560 Atomic orbital electron populations 1.21485 0.97149 0.97300 1.01960 1.21535 0.95462 0.97740 0.99947 1.19434 0.94162 0.91363 0.83162 0.97414 1.20962 1.31369 1.12157 0.89623 0.91861 1.24859 0.95199 0.95068 0.98683 1.69865 1.38391 1.23588 1.20999 0.86617 0.79806 0.79847 0.81526 1.20210 1.21337 1.20310 1.59697 1.59373 1.02302 1.02495 1.22244 0.97685 0.88285 1.01995 1.19048 0.90059 0.92352 0.90682 1.21820 0.95829 1.00844 0.98985 1.21205 0.99792 0.95987 0.93310 1.20910 0.92977 1.02463 0.99693 1.21015 0.95633 0.96405 0.96136 1.16124 0.85315 1.04701 0.97232 1.25287 0.92339 0.93316 0.92613 1.81111 1.12322 1.08787 1.08541 0.92472 0.93681 0.96724 0.96689 0.89096 0.92837 0.93501 0.89558 0.95994 0.85143 0.85931 0.85620 0.85455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.84 9.41 37.16 0.35 -2.49 16 2 C -0.11 -2.56 5.25 -26.73 -0.14 -2.70 16 3 C 0.22 5.24 1.44 -68.86 -0.10 5.14 16 4 H 0.01 0.21 6.91 -51.93 -0.36 -0.15 16 5 C -0.50 -13.02 6.49 -34.44 -0.22 -13.24 16 6 H 0.06 1.66 6.53 -52.49 -0.34 1.32 16 7 C 0.06 1.69 5.26 -17.82 -0.09 1.59 16 8 N -0.89 -24.26 11.38 55.43 0.63 -23.63 16 9 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.52 -10.60 3.36 -172.42 -0.58 -11.18 16 14 C 0.04 0.82 9.16 60.06 0.55 1.37 16 15 C 0.18 3.14 3.19 -83.56 -0.27 2.87 16 16 C -0.15 -2.41 8.52 -39.42 -0.34 -2.74 16 17 C -0.08 -1.02 10.03 -39.54 -0.40 -1.42 16 18 C -0.14 -1.58 10.02 -39.62 -0.40 -1.98 16 19 C -0.07 -0.90 9.75 -39.19 -0.38 -1.28 16 20 C -0.03 -0.48 5.76 -106.61 -0.61 -1.09 16 21 C 0.28 5.15 13.41 -22.48 -0.30 4.84 16 22 N -0.43 -8.66 18.50 41.84 0.77 -7.88 16 23 H 0.06 1.44 7.26 -51.93 -0.38 1.06 16 24 H 0.04 1.04 6.11 -51.93 -0.32 0.73 16 25 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 26 H 0.01 0.32 6.91 -51.93 -0.36 -0.03 16 27 H 0.09 2.37 6.23 -51.93 -0.32 2.05 16 28 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.09 1.71 6.20 -51.92 -0.32 1.39 16 31 H 0.02 0.38 7.66 -51.93 -0.40 -0.02 16 32 H 0.13 2.10 7.01 -52.49 -0.37 1.73 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 35 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 LS Contribution 291.38 15.07 4.39 4.39 Total: -1.00 -28.35 291.38 -6.57 -34.92 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -4.41 Total: -1.37 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -2.35 Total: -11.12 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.83 Total: -42.69 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.35 -6.57 -34.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127570696.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.276 kcal (2) G-P(sol) polarization free energy of solvation -28.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds