Wall clock time and date at job start Mon Mar 30 2020 06:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47226 * 2 1 4 4 H 1.08998 * 109.47213 * 174.71672 * 3 2 1 5 5 C 1.50699 * 109.47007 * 54.70708 * 3 2 1 6 6 H 1.07994 * 120.00634 * 239.99753 * 5 3 2 7 7 C 1.37882 * 119.99350 * 60.00434 * 5 3 2 8 8 N 1.31506 * 120.00490 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99443 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00155 * 9 7 5 11 11 H 1.48500 * 109.46898 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47579 * 299.99901 * 9 7 5 13 13 N 1.46906 * 109.46927 * 294.71154 * 3 2 1 14 14 C 1.46893 * 110.99777 * 177.71865 * 13 3 2 15 15 C 1.39036 * 110.99725 * 301.66949 * 13 3 2 16 16 C 1.38880 * 120.17224 * 305.37472 * 15 13 3 17 17 C 1.38020 * 120.06717 * 179.97438 * 16 15 13 18 18 C 1.38565 * 120.42406 * 359.97438 * 17 16 15 19 19 C 1.37794 * 120.34352 * 0.02562 * 18 17 16 20 20 C 1.39732 * 119.92348 * 0.25268 * 19 18 17 21 21 C 1.43197 * 120.20764 * 179.74445 * 20 19 18 22 22 N 4.49282 * 52.51864 * 294.25060 * 2 1 3 23 23 H 1.08997 * 109.47474 * 294.34474 * 1 2 3 24 24 H 1.09005 * 109.47053 * 54.34806 * 1 2 3 25 25 H 1.09007 * 109.47407 * 174.34073 * 1 2 3 26 26 H 1.09006 * 109.47245 * 239.99828 * 2 1 3 27 27 H 1.09001 * 109.47325 * 120.00237 * 2 1 3 28 28 H 0.97003 * 120.00683 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.47130 * 183.95757 * 14 13 3 30 30 H 1.09007 * 109.47259 * 303.95438 * 14 13 3 31 31 H 1.09000 * 109.47603 * 63.95344 * 14 13 3 32 32 H 1.07993 * 119.96706 * 0.02562 * 16 15 13 33 33 H 1.07993 * 119.78558 * 179.97438 * 17 16 15 34 34 H 1.07999 * 119.82917 * 180.02562 * 18 17 16 35 35 H 1.08004 * 120.03825 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1259 1.4439 0.0946 5 6 1.4335 2.1897 1.1597 6 1 0.8248 3.0635 0.9801 7 6 1.6560 1.7577 2.4501 8 7 2.3969 0.6935 2.6688 9 14 0.9048 2.6844 3.8876 10 1 -0.5747 2.6829 3.7588 11 1 1.2910 2.0221 5.1594 12 1 1.4002 4.0842 3.8875 13 7 1.6573 2.0971 -1.2582 14 6 2.0841 3.5026 -1.2713 15 6 2.1700 1.4105 -2.3531 16 6 3.5312 1.1485 -2.4378 17 6 4.0378 0.4662 -3.5254 18 6 3.1959 0.0374 -4.5390 19 6 1.8425 0.2880 -4.4725 20 6 1.3151 0.9827 -3.3808 21 6 -0.0896 1.2512 -3.3082 22 7 -1.2039 1.4644 -3.2507 23 1 -0.3634 0.4236 0.9362 24 1 -0.3633 0.5990 -0.8351 25 1 -0.3634 -1.0227 -0.1013 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.5537 0.3898 3.5766 29 1 1.7274 3.9822 -2.1828 30 1 1.6692 4.0165 -0.4041 31 1 3.1725 3.5523 -1.2367 32 1 4.1940 1.4783 -1.6515 33 1 5.0971 0.2654 -3.5868 34 1 3.6025 -0.4960 -5.3854 35 1 1.1909 -0.0481 -5.2655 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127570696.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:03 Heat of formation + Delta-G solvation = 48.141703 kcal Electronic energy + Delta-G solvation = -17767.332414 eV Core-core repulsion = 15151.051605 eV Total energy + Delta-G solvation = -2616.280809 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -41.09021 -38.14912 -37.23031 -35.05555 -32.91489 -32.18045 -30.82031 -28.27211 -26.91682 -24.91085 -24.45651 -22.88927 -20.96666 -19.61219 -18.08563 -17.31992 -16.82605 -16.55576 -15.85546 -15.61167 -15.15601 -14.90540 -14.67161 -14.17674 -14.00948 -13.94444 -13.83180 -13.56239 -13.04431 -12.92475 -12.82196 -12.75327 -12.47096 -12.28787 -12.13307 -11.89008 -11.66750 -11.35896 -10.91257 -10.50463 -9.82378 -9.52678 -9.07418 -8.10145 -6.18095 -0.04811 0.45860 1.40306 1.42535 1.48714 1.85792 2.13783 2.41380 3.00678 3.11588 3.18122 3.25014 4.09023 4.24512 4.32747 4.52928 4.57907 4.61052 4.64963 4.70177 4.74459 4.86246 5.01285 5.10098 5.19039 5.35789 5.39749 5.43463 5.57132 5.60118 5.67337 5.74195 5.83028 6.00428 6.22772 6.29456 6.65753 6.87576 6.90408 7.48164 8.95420 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028230 B = 0.007838 C = 0.007239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.616337 B = 3571.673428 C = 3867.061256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.098 4.098 3 C 0.234 3.766 4 H -0.016 1.016 5 C -0.510 4.510 6 H 0.053 0.947 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.946 3.054 10 H -0.281 1.281 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.527 5.527 14 C 0.048 3.952 15 C 0.145 3.855 16 C -0.170 4.170 17 C -0.070 4.070 18 C -0.122 4.122 19 C -0.059 4.059 20 C -0.050 4.050 21 C 0.292 3.708 22 N -0.474 5.474 23 H 0.031 0.969 24 H 0.043 0.957 25 H 0.030 0.970 26 H 0.029 0.971 27 H 0.064 0.936 28 H 0.261 0.739 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.028 0.972 32 H 0.115 0.885 33 H 0.156 0.844 34 H 0.172 0.828 35 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.579 -1.568 -13.543 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.136 4.136 3 C 0.129 3.871 4 H 0.002 0.998 5 C -0.549 4.549 6 H 0.071 0.929 7 C -0.177 4.177 8 N -0.552 5.552 9 Si 0.772 3.228 10 H -0.206 1.206 11 H -0.209 1.209 12 H -0.196 1.196 13 N -0.248 5.248 14 C -0.099 4.099 15 C 0.047 3.953 16 C -0.190 4.190 17 C -0.089 4.089 18 C -0.140 4.140 19 C -0.080 4.080 20 C -0.055 4.055 21 C -0.022 4.022 22 N -0.151 5.151 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.133 0.867 33 H 0.174 0.826 34 H 0.190 0.810 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.394 -1.324 -13.296 13.786 hybrid contribution 0.716 0.501 1.589 1.814 sum 4.110 -0.822 -11.706 12.434 Atomic orbital electron populations 1.21351 0.96971 0.98032 1.00406 1.21351 0.95385 0.97690 0.99196 1.19097 0.92327 0.91369 0.84331 0.99848 1.21193 1.30920 1.11953 0.90828 0.92908 1.25478 0.95690 0.95808 1.00737 1.69972 1.39403 1.24585 1.21216 0.85804 0.78695 0.79137 0.79149 1.20632 1.20943 1.19613 1.59509 1.60139 1.02961 1.02241 1.22194 0.97993 0.87768 1.01896 1.19083 0.91331 0.94267 0.90593 1.21758 0.94655 1.02368 1.00222 1.21602 1.01743 0.93714 0.91843 1.21431 0.91907 1.00574 1.00094 1.21418 0.96930 0.94441 0.95178 1.16313 0.83973 1.06586 0.98604 1.25744 0.92792 0.92200 0.91467 1.81109 1.13601 1.10435 1.09932 0.95019 0.93805 0.95053 0.95241 0.91769 0.92979 0.91657 0.91612 0.95367 0.86709 0.82640 0.81018 0.82504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.20 9.41 71.98 0.68 -4.52 16 2 C -0.10 -4.68 5.25 30.59 0.16 -4.52 16 3 C 0.23 11.30 1.44 44.17 0.06 11.36 16 4 H -0.02 -0.83 6.91 -2.39 -0.02 -0.85 16 5 C -0.51 -27.21 6.49 25.60 0.17 -27.04 16 6 H 0.05 2.87 6.53 -2.91 -0.02 2.85 16 7 C 0.02 1.20 5.26 84.66 0.44 1.65 16 8 N -0.91 -50.86 11.38 21.45 0.24 -50.62 16 9 Si 0.95 43.61 29.54 68.60 2.03 45.63 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 13 N -0.53 -21.89 3.36 -699.42 -2.35 -24.24 16 14 C 0.05 1.80 9.16 127.69 1.17 2.97 16 15 C 0.14 5.02 3.19 38.67 0.12 5.14 16 16 C -0.17 -5.04 8.52 22.37 0.19 -4.85 16 17 C -0.07 -1.42 10.03 22.30 0.22 -1.20 16 18 C -0.12 -2.04 10.02 22.24 0.22 -1.82 16 19 C -0.06 -1.25 9.75 22.53 0.22 -1.03 16 20 C -0.05 -1.55 5.76 -21.16 -0.12 -1.67 16 21 C 0.29 10.52 13.41 88.33 1.18 11.71 16 22 N -0.47 -18.97 18.50 19.00 0.35 -18.62 16 23 H 0.03 1.61 7.26 -2.39 -0.02 1.59 16 24 H 0.04 2.05 6.11 -2.38 -0.01 2.03 16 25 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 26 H 0.03 1.29 6.91 -2.38 -0.02 1.27 16 27 H 0.06 3.42 6.23 -2.39 -0.01 3.41 16 28 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.07 2.70 6.20 -2.38 -0.01 2.69 16 31 H 0.03 1.00 7.66 -2.39 -0.02 0.98 16 32 H 0.11 3.71 7.01 -2.91 -0.02 3.69 16 33 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -63.33 291.38 6.09 -57.24 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: 1.09 Total: 4.42 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 4.73 Total: -13.82 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -1.75 Total: -93.48 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.63 kcal Total: -63.33 6.09 -57.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127570696.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.381 kcal (2) G-P(sol) polarization free energy of solvation -63.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds