Wall clock time and date at job start Mon Mar 30 2020 05:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.46691 * 2 1 4 4 C 1.38316 * 119.96704 * 270.29107 * 3 2 1 5 5 C 1.38256 * 120.14978 * 180.25847 * 4 3 2 6 6 C 1.38133 * 120.07205 * 359.45041 * 5 4 3 7 7 C 1.38876 * 119.92258 * 0.28037 * 6 5 4 8 8 N 1.39854 * 120.06600 * 179.97438 * 7 6 5 9 9 C 1.35498 * 119.99490 * 179.97438 * 8 7 6 10 10 N 5.48775 * 100.67071 * 57.82790 * 2 1 3 11 11 C 1.46495 * 120.00282 * 359.97438 * 8 7 6 12 12 C 1.53006 * 109.46796 * 90.00240 * 11 8 7 13 13 C 1.50703 * 109.47005 * 179.97438 * 12 11 8 14 14 H 1.07996 * 119.99899 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99992 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99866 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99893 * 180.02562 * 15 13 12 18 18 H 1.48489 * 109.47430 * 60.00105 * 17 15 13 19 19 H 1.48503 * 109.46740 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47040 * 299.99841 * 17 15 13 21 21 C 1.38082 * 119.96825 * 90.00657 * 3 2 1 22 22 H 1.09000 * 109.47611 * 60.00118 * 1 2 3 23 23 H 1.08997 * 109.47453 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47072 * 300.00171 * 1 2 3 25 25 H 1.08992 * 109.46930 * 240.00256 * 2 1 3 26 26 H 1.08995 * 109.47176 * 119.99716 * 2 1 3 27 27 H 1.08005 * 119.92135 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.96774 * 179.73194 * 5 4 3 29 29 H 1.07999 * 120.03792 * 180.25487 * 6 5 4 30 30 H 1.08995 * 109.47267 * 210.00167 * 11 8 7 31 31 H 1.09001 * 109.47211 * 330.00744 * 11 8 7 32 32 H 1.08995 * 109.47152 * 299.99997 * 12 11 8 33 33 H 1.09001 * 109.46829 * 60.00270 * 12 11 8 34 34 H 0.96997 * 119.99611 * 180.02562 * 16 15 13 35 35 H 1.08008 * 120.03548 * 0.03401 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2567 2.0742 -1.1982 5 6 2.7225 3.3759 -1.2027 6 6 2.9545 4.0322 -0.0095 7 6 2.7248 3.3809 1.1954 8 7 2.9591 4.0422 2.4051 9 6 2.7340 3.4056 3.5799 10 7 2.5461 2.8715 4.5648 11 6 3.4479 5.4232 2.4023 12 6 2.2582 6.3853 2.4017 13 6 2.7610 7.8060 2.3994 14 1 3.8228 8.0029 2.3981 15 6 1.8653 8.8542 2.3980 16 7 0.5722 8.6143 2.3991 17 14 2.4886 10.6152 2.3945 18 1 3.3130 10.8461 1.1812 19 1 1.3338 11.5489 2.3940 20 1 3.3143 10.8504 3.6062 21 6 2.2622 2.0711 1.1962 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.0713 1.5651 -2.1325 28 1 2.9009 3.8819 -2.1400 29 1 3.3144 5.0504 -0.0136 30 1 4.0543 5.5959 3.2914 31 1 4.0527 5.5928 1.5115 32 1 1.6518 6.2127 1.5126 33 1 1.6534 6.2157 3.2926 34 1 -0.0578 9.3517 2.3977 35 1 2.0829 1.5617 2.1316 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129036687.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:27 Heat of formation + Delta-G solvation = 45.922470 kcal Electronic energy + Delta-G solvation = -16618.359956 eV Core-core repulsion = 14001.982914 eV Total energy + Delta-G solvation = -2616.377042 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.88246 -37.40979 -35.14614 -33.74904 -33.06928 -30.88342 -29.22564 -28.72145 -25.18259 -23.72416 -22.89145 -21.55720 -20.48654 -18.41974 -16.98180 -16.27573 -15.46747 -14.88343 -14.86401 -14.47781 -14.27586 -13.77537 -13.50065 -13.18578 -13.06828 -12.68750 -12.42799 -12.08445 -12.01556 -11.73798 -11.54233 -11.41510 -11.00941 -10.98339 -10.84733 -10.63604 -10.21448 -10.13563 -9.44673 -9.35177 -8.61821 -8.47486 -7.41010 -6.12048 -4.17807 1.53951 1.57647 2.67540 3.03131 3.27024 3.32524 3.34023 3.43000 4.05402 4.36565 4.69616 4.88924 5.15099 5.23013 5.24914 5.32550 5.41133 5.51402 5.57279 5.66953 5.75765 5.83990 5.98409 6.08050 6.12627 6.17247 6.32983 6.50144 6.60885 6.76610 6.77340 6.95275 7.35169 7.51793 7.56821 7.85083 8.18885 8.38149 8.88195 9.47622 10.98890 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.027108 B = 0.005323 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.645951 B = 5259.177746 C = 5690.316384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.048 4.048 4 C -0.160 4.160 5 C -0.077 4.077 6 C -0.161 4.161 7 C 0.203 3.797 8 N -0.503 5.503 9 C 0.425 3.575 10 N -0.446 5.446 11 C 0.120 3.880 12 C 0.007 3.993 13 C -0.529 4.529 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.896 3.104 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.176 4.176 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.118 0.882 28 H 0.126 0.874 29 H 0.139 0.861 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.028 0.972 33 H 0.020 0.980 34 H 0.264 0.736 35 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.498 -12.970 -8.087 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.121 4.121 3 C -0.048 4.048 4 C -0.180 4.180 5 C -0.096 4.096 6 C -0.182 4.182 7 C 0.105 3.895 8 N -0.213 5.213 9 C 0.022 3.978 10 N -0.139 5.139 11 C 0.001 3.999 12 C -0.032 4.032 13 C -0.568 4.568 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.527 5.527 17 Si 0.723 3.277 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.198 4.198 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.136 0.864 28 H 0.144 0.856 29 H 0.157 0.843 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.046 0.954 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.095 -13.534 -6.573 15.361 hybrid contribution 0.219 1.436 -0.314 1.486 sum 3.313 -12.098 -6.887 14.310 Atomic orbital electron populations 1.21746 0.94691 1.01457 1.02540 1.20527 0.96249 0.92719 1.02588 1.19556 0.97188 0.95701 0.92394 1.20837 1.04531 0.95562 0.97078 1.20912 0.97062 0.94249 0.97338 1.20895 1.05812 1.01316 0.90195 1.17771 0.95881 0.91330 0.84496 1.42540 1.67498 1.14016 0.97252 1.23536 0.92095 0.93119 0.89040 1.81826 1.18497 1.07792 1.05737 1.22362 0.99432 0.75239 1.02905 1.19523 0.92370 0.92741 0.98522 1.20967 0.93069 0.90299 1.52449 0.92266 1.24991 0.94793 0.99410 0.94825 1.69961 1.01065 1.32160 1.49510 0.86596 0.78311 0.84029 0.78726 1.20040 1.21214 1.20141 1.20588 1.06927 0.93863 0.98383 0.92384 0.92602 0.92437 0.91019 0.91261 0.86405 0.85619 0.84322 0.90660 0.89405 0.95387 0.96142 0.92680 0.86430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.89 37.16 0.37 -1.08 16 2 C -0.08 -0.85 6.06 -27.89 -0.17 -1.02 16 3 C -0.05 -0.61 5.13 -104.65 -0.54 -1.15 16 4 C -0.16 -1.94 9.70 -39.55 -0.38 -2.33 16 5 C -0.08 -0.99 10.04 -39.61 -0.40 -1.38 16 6 C -0.16 -2.43 9.21 -39.38 -0.36 -2.80 16 7 C 0.20 3.34 6.52 -83.71 -0.55 2.79 16 8 N -0.50 -9.07 2.72 -74.68 -0.20 -9.27 16 9 C 0.43 8.03 14.13 -102.19 -1.44 6.59 16 10 N -0.45 -8.72 18.54 41.27 0.77 -7.95 16 11 C 0.12 2.27 5.06 -4.04 -0.02 2.25 16 12 C 0.01 0.16 5.30 -27.88 -0.15 0.01 16 13 C -0.53 -13.93 9.11 -34.44 -0.31 -14.24 16 14 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 17 Si 0.90 20.72 29.54 -169.99 -5.02 15.69 16 18 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 C -0.18 -2.66 8.95 -39.39 -0.35 -3.01 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 26 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 27 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 28 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.14 2.12 6.15 -52.49 -0.32 1.79 16 30 H 0.07 1.38 8.03 -51.93 -0.42 0.97 16 31 H 0.09 1.48 6.20 -51.93 -0.32 1.16 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.12 1.81 7.01 -52.48 -0.37 1.44 16 LS Contribution 306.38 15.07 4.62 4.62 Total: -1.00 -29.21 306.38 -8.28 -37.49 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -4.77 Total: -1.68 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -4.40 Total: -13.75 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 1.30 Total: -42.38 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.21 -8.28 -37.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129036687.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.410 kcal (2) G-P(sol) polarization free energy of solvation -29.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds