Wall clock time and date at job start Mon Mar 30 2020 05:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.46691 * 2 1 4 4 C 1.38316 * 119.96704 * 270.29107 * 3 2 1 5 5 C 1.38256 * 120.14978 * 180.25847 * 4 3 2 6 6 C 1.38133 * 120.07205 * 359.45041 * 5 4 3 7 7 C 1.38876 * 119.92258 * 0.28037 * 6 5 4 8 8 N 1.39854 * 120.06600 * 179.97438 * 7 6 5 9 9 C 1.35498 * 119.99490 * 179.97438 * 8 7 6 10 10 N 5.48775 * 100.67071 * 57.82790 * 2 1 3 11 11 C 1.46495 * 120.00282 * 359.97438 * 8 7 6 12 12 C 1.53006 * 109.46796 * 90.00240 * 11 8 7 13 13 C 1.50703 * 109.47005 * 179.97438 * 12 11 8 14 14 H 1.07996 * 119.99899 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99992 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99866 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99893 * 180.02562 * 15 13 12 18 18 H 1.48489 * 109.47430 * 60.00105 * 17 15 13 19 19 H 1.48503 * 109.46740 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47040 * 299.99841 * 17 15 13 21 21 C 1.38082 * 119.96825 * 90.00657 * 3 2 1 22 22 H 1.09000 * 109.47611 * 60.00118 * 1 2 3 23 23 H 1.08997 * 109.47453 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47072 * 300.00171 * 1 2 3 25 25 H 1.08992 * 109.46930 * 240.00256 * 2 1 3 26 26 H 1.08995 * 109.47176 * 119.99716 * 2 1 3 27 27 H 1.08005 * 119.92135 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.96774 * 179.73194 * 5 4 3 29 29 H 1.07999 * 120.03792 * 180.25487 * 6 5 4 30 30 H 1.08995 * 109.47267 * 210.00167 * 11 8 7 31 31 H 1.09001 * 109.47211 * 330.00744 * 11 8 7 32 32 H 1.08995 * 109.47152 * 299.99997 * 12 11 8 33 33 H 1.09001 * 109.46829 * 60.00270 * 12 11 8 34 34 H 0.96997 * 119.99611 * 180.02562 * 16 15 13 35 35 H 1.08008 * 120.03548 * 0.03401 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2567 2.0742 -1.1982 5 6 2.7225 3.3759 -1.2027 6 6 2.9545 4.0322 -0.0095 7 6 2.7248 3.3809 1.1954 8 7 2.9591 4.0422 2.4051 9 6 2.7340 3.4056 3.5799 10 7 2.5461 2.8715 4.5648 11 6 3.4479 5.4232 2.4023 12 6 2.2582 6.3853 2.4017 13 6 2.7610 7.8060 2.3994 14 1 3.8228 8.0029 2.3981 15 6 1.8653 8.8542 2.3980 16 7 0.5722 8.6143 2.3991 17 14 2.4886 10.6152 2.3945 18 1 3.3130 10.8461 1.1812 19 1 1.3338 11.5489 2.3940 20 1 3.3143 10.8504 3.6062 21 6 2.2622 2.0711 1.1962 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.0713 1.5651 -2.1325 28 1 2.9009 3.8819 -2.1400 29 1 3.3144 5.0504 -0.0136 30 1 4.0543 5.5959 3.2914 31 1 4.0527 5.5928 1.5115 32 1 1.6518 6.2127 1.5126 33 1 1.6534 6.2157 3.2926 34 1 -0.0578 9.3517 2.3977 35 1 2.0829 1.5617 2.1316 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129036687.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:26 Heat of formation + Delta-G solvation = 34.094878 kcal Electronic energy + Delta-G solvation = -16618.872839 eV Core-core repulsion = 14001.982914 eV Total energy + Delta-G solvation = -2616.889925 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.09432 -38.70103 -36.63659 -35.27722 -34.47428 -32.45669 -30.49196 -29.93926 -26.94980 -24.80919 -24.03875 -23.26475 -21.63342 -19.71027 -18.69618 -17.78269 -16.71126 -16.63139 -16.06783 -15.90442 -15.47346 -15.05347 -14.57526 -14.50370 -14.34550 -14.21153 -13.94189 -13.61416 -13.43759 -13.02716 -12.84294 -12.68707 -12.56548 -12.44392 -11.97453 -11.93831 -11.80053 -11.62556 -11.36014 -10.86330 -10.56965 -9.69221 -8.70688 -8.20396 -6.33665 0.44451 0.45814 1.25297 1.45109 1.46956 1.52480 1.54858 1.98512 2.42737 2.91675 3.14296 3.59931 3.94528 4.04361 4.21481 4.33491 4.42411 4.46521 4.54462 4.57176 4.63374 4.70774 4.77834 4.87585 5.09570 5.14388 5.20279 5.37711 5.40349 5.46998 5.56628 5.60847 5.70500 5.76292 5.86869 6.12903 6.24282 6.82580 6.90636 7.37025 8.91124 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.027108 B = 0.005323 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.645951 B = 5259.177746 C = 5690.316384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.049 4.049 4 C -0.151 4.151 5 C -0.075 4.075 6 C -0.174 4.174 7 C 0.172 3.828 8 N -0.505 5.505 9 C 0.429 3.571 10 N -0.465 5.465 11 C 0.135 3.865 12 C 0.016 3.984 13 C -0.540 4.540 14 H 0.076 0.924 15 C 0.004 3.996 16 N -0.933 5.933 17 Si 0.967 3.033 18 H -0.260 1.260 19 H -0.289 1.289 20 H -0.268 1.268 21 C -0.188 4.188 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.036 0.964 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.152 0.848 28 H 0.155 0.845 29 H 0.133 0.867 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.005 0.995 33 H -0.020 1.020 34 H 0.263 0.737 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.644 -13.412 -10.112 17.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 C -0.050 4.050 4 C -0.170 4.170 5 C -0.093 4.093 6 C -0.195 4.195 7 C 0.077 3.923 8 N -0.216 5.216 9 C 0.026 3.974 10 N -0.159 5.159 11 C 0.015 3.985 12 C -0.022 4.022 13 C -0.579 4.579 14 H 0.094 0.906 15 C -0.195 4.195 16 N -0.573 5.573 17 Si 0.791 3.209 18 H -0.184 1.184 19 H -0.215 1.215 20 H -0.193 1.193 21 C -0.210 4.210 22 H 0.079 0.921 23 H 0.094 0.906 24 H 0.055 0.945 25 H 0.116 0.884 26 H 0.087 0.913 27 H 0.170 0.830 28 H 0.172 0.828 29 H 0.151 0.849 30 H 0.100 0.900 31 H 0.131 0.869 32 H 0.023 0.977 33 H -0.002 1.002 34 H 0.072 0.928 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.258 -14.001 -8.624 16.987 hybrid contribution -0.186 1.480 0.235 1.510 sum 4.072 -12.521 -8.390 15.613 Atomic orbital electron populations 1.21741 0.94427 1.02502 1.01656 1.20600 0.96340 0.91102 1.03887 1.19936 0.96198 0.97001 0.91844 1.21262 1.02474 0.95208 0.98052 1.21288 0.95898 0.94642 0.97494 1.21018 1.06540 1.01312 0.90674 1.18058 0.97932 0.92158 0.84138 1.42497 1.67923 1.13639 0.97535 1.23651 0.91740 0.92871 0.89146 1.81799 1.19430 1.08463 1.06194 1.22066 0.97192 0.74757 1.04475 1.19335 0.93579 0.93889 0.95401 1.21469 0.93931 0.91221 1.51261 0.90626 1.25959 0.94851 1.04202 0.94461 1.70118 1.02571 1.33441 1.51165 0.85472 0.77713 0.78288 0.79416 1.18399 1.21499 1.19342 1.20678 1.07600 0.93633 0.99109 0.92072 0.90649 0.94503 0.88443 0.91279 0.82993 0.82763 0.84902 0.89985 0.86856 0.97702 1.00171 0.92810 0.87489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.89 71.98 0.71 -1.87 16 2 C -0.08 -1.48 6.06 29.85 0.18 -1.29 16 3 C -0.05 -1.18 5.13 -19.88 -0.10 -1.28 16 4 C -0.15 -3.17 9.70 22.29 0.22 -2.95 16 5 C -0.07 -1.73 10.04 22.25 0.22 -1.51 16 6 C -0.17 -5.14 9.21 22.40 0.21 -4.93 16 7 C 0.17 5.72 6.52 38.17 0.25 5.97 16 8 N -0.50 -18.59 2.72 -390.20 -1.06 -19.65 16 9 C 0.43 16.70 14.13 184.39 2.60 19.30 16 10 N -0.46 -18.72 18.54 17.21 0.32 -18.40 16 11 C 0.14 5.15 5.06 86.38 0.44 5.59 16 12 C 0.02 0.81 5.30 29.85 0.16 0.97 16 13 C -0.54 -28.55 9.11 25.60 0.23 -28.32 16 14 H 0.08 3.66 7.74 -2.91 -0.02 3.64 16 15 C 0.00 0.20 5.46 84.65 0.46 0.67 16 16 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 17 Si 0.97 42.28 29.54 68.60 2.03 44.31 16 18 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 19 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 20 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 21 C -0.19 -5.69 8.95 22.39 0.20 -5.49 16 22 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.10 1.28 8.09 -2.39 -0.02 1.26 16 26 H 0.07 1.25 8.08 -2.39 -0.02 1.24 16 27 H 0.15 2.19 8.06 -2.91 -0.02 2.17 16 28 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 29 H 0.13 3.99 6.15 -2.91 -0.02 3.97 16 30 H 0.08 3.00 8.03 -2.39 -0.02 2.98 16 31 H 0.11 3.74 6.20 -2.39 -0.01 3.73 16 32 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 33 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 34 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.11 3.39 7.01 -2.91 -0.02 3.37 16 Total: -1.00 -64.31 306.38 8.43 -55.88 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 1.07 Total: 8.43 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 5.78 Total: -15.16 kcal Atomic # 7 Polarization: -93.01 SS G_CDS: -0.46 Total: -93.47 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -64.31 8.43 -55.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129036687.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.976 kcal (2) G-P(sol) polarization free energy of solvation -64.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds