Wall clock time and date at job start Mon Mar 30 2020 05:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37670 * 120.04038 * 2 1 4 4 C 1.39156 * 120.07576 * 180.27488 * 3 2 1 5 5 N 1.39189 * 119.92541 * 179.72151 * 4 3 2 6 6 C 1.46509 * 119.99903 * 5.55219 * 5 4 3 7 7 C 1.46493 * 120.00409 * 185.55316 * 5 4 3 8 8 H 1.09004 * 109.47011 * 355.31728 * 7 5 4 9 9 C 1.53001 * 109.47010 * 235.32169 * 7 5 4 10 10 C 1.50694 * 109.47440 * 115.31698 * 7 5 4 11 11 H 1.07997 * 120.00121 * 0.02562 * 10 7 5 12 12 C 1.37879 * 120.00205 * 180.02562 * 10 7 5 13 13 N 1.31510 * 119.99858 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 120.00161 * 180.02562 * 12 10 7 15 15 H 1.48498 * 109.47153 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47464 * 119.99910 * 14 12 10 17 17 H 1.48503 * 109.46705 * 239.99715 * 14 12 10 18 18 C 1.39195 * 120.14917 * 359.44878 * 4 3 2 19 19 C 1.37628 * 120.07744 * 0.27331 * 18 4 3 20 20 C 1.39793 * 120.03581 * 179.72556 * 2 1 3 21 21 C 1.43199 * 120.07500 * 359.97438 * 20 2 1 22 22 N 3.48519 * 80.42241 * 179.70867 * 2 1 3 23 23 H 1.09000 * 109.46804 * 270.27757 * 1 2 3 24 24 H 1.09000 * 109.47035 * 30.27301 * 1 2 3 25 25 H 1.08996 * 109.47108 * 150.28214 * 1 2 3 26 26 H 1.08007 * 119.95990 * 0.02562 * 3 2 1 27 27 H 1.09001 * 109.46810 * 270.00126 * 6 5 4 28 28 H 1.09002 * 109.46712 * 29.99914 * 6 5 4 29 29 H 1.08993 * 109.47004 * 150.00004 * 6 5 4 30 30 H 1.08994 * 109.47148 * 299.99159 * 9 7 5 31 31 H 1.09005 * 109.46743 * 179.97438 * 9 7 5 32 32 H 1.08994 * 109.47311 * 59.99902 * 9 7 5 33 33 H 0.97007 * 120.00534 * 179.97438 * 13 12 10 34 34 H 1.08000 * 119.96050 * 180.29426 * 18 4 3 35 35 H 1.07997 * 120.03647 * 180.02562 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1918 0.0000 4 6 3.5878 1.1926 -0.0058 5 7 4.2814 2.3994 -0.0116 6 6 3.5520 3.6641 0.1111 7 6 5.7406 2.4050 -0.1405 8 1 6.1097 1.3793 -0.1360 9 6 6.3532 3.1725 1.0328 10 6 6.1281 3.0726 -1.4347 11 1 5.3639 3.4549 -2.0950 12 6 7.4584 3.1953 -1.7758 13 7 8.3891 2.7302 -0.9714 14 14 7.9388 4.0235 -3.3798 15 1 6.7142 4.4569 -4.0992 16 1 8.7886 5.2065 -3.0910 17 1 8.6956 3.0648 -4.2245 18 6 4.2876 -0.0105 0.0000 19 6 3.6050 -1.2056 0.0058 20 6 2.2067 -1.2102 0.0058 21 6 1.4931 -2.4517 0.0123 22 7 0.9271 -3.4366 0.0175 23 1 -0.3633 0.0050 1.0277 24 1 -0.3633 0.8875 -0.5181 25 1 -0.3633 -0.8925 -0.5094 26 1 1.6562 2.1271 0.0004 27 1 3.2807 4.0247 -0.8811 28 1 2.6485 3.5067 0.7001 29 1 4.1842 4.4016 0.6054 30 1 5.9843 4.1981 1.0283 31 1 7.4391 3.1762 0.9371 32 1 6.0730 2.6896 1.9689 33 1 9.3250 2.8162 -1.2115 34 1 5.3676 -0.0063 0.0003 35 1 4.1487 -2.1387 0.0107 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132575283.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:29 Heat of formation + Delta-G solvation = 54.979239 kcal Electronic energy + Delta-G solvation = -16968.407544 eV Core-core repulsion = 14352.423233 eV Total energy + Delta-G solvation = -2615.984311 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.49183 -37.01431 -35.57889 -33.18296 -32.36956 -30.49196 -28.86662 -26.97166 -25.90403 -25.29292 -22.20575 -21.53439 -19.76072 -18.02987 -16.57539 -16.33924 -15.51686 -14.70185 -14.20810 -14.17947 -13.67626 -13.52623 -13.26423 -13.04495 -12.85790 -12.58715 -12.30623 -12.13872 -11.68729 -11.62949 -11.52504 -11.43498 -11.14572 -10.94521 -10.74809 -10.54302 -10.27440 -10.08018 -9.49970 -8.91526 -8.57277 -8.46777 -6.66711 -6.18282 -4.30204 1.44616 1.81004 3.05489 3.18003 3.27160 3.30106 3.42666 3.88260 4.28891 4.34672 4.44059 5.02058 5.09841 5.12117 5.42807 5.66505 5.67797 5.74887 5.84837 5.94197 6.04239 6.10172 6.24092 6.30560 6.51516 6.65537 6.69473 6.76291 6.86825 6.89555 7.12124 7.28232 7.52654 7.73251 7.90594 7.97052 8.11603 8.32308 8.75749 9.37627 10.82703 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.030627 B = 0.005656 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.020853 B = 4949.554658 C = 5184.570679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.015 3.985 3 C -0.225 4.225 4 C 0.272 3.728 5 N -0.591 5.591 6 C 0.093 3.907 7 C 0.258 3.742 8 H 0.057 0.943 9 C -0.151 4.151 10 C -0.527 4.527 11 H 0.061 0.939 12 C 0.066 3.934 13 N -0.889 5.889 14 Si 0.898 3.102 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.282 1.282 18 C -0.209 4.209 19 C -0.014 4.014 20 C -0.139 4.139 21 C 0.280 3.720 22 N -0.468 5.468 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.125 0.875 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.095 0.905 32 H 0.014 0.986 33 H 0.264 0.736 34 H 0.139 0.861 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.504 0.164 2.985 9.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.012 3.988 3 C -0.248 4.248 4 C 0.159 3.841 5 N -0.291 5.291 6 C -0.051 4.051 7 C 0.158 3.842 8 H 0.075 0.925 9 C -0.210 4.210 10 C -0.566 4.566 11 H 0.079 0.921 12 C -0.137 4.137 13 N -0.527 5.527 14 Si 0.726 3.274 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.208 1.208 18 C -0.231 4.231 19 C -0.036 4.036 20 C -0.145 4.145 21 C -0.033 4.033 22 N -0.145 5.145 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.143 0.857 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.113 0.887 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.157 0.843 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.011 -1.102 3.005 9.562 hybrid contribution 0.689 0.946 -0.938 1.500 sum -8.321 -0.156 2.066 8.575 Atomic orbital electron populations 1.20860 0.91564 1.02722 1.02447 1.19428 0.94904 0.91179 0.93338 1.20335 0.92162 0.97414 1.14935 1.18192 0.90892 0.86997 0.87988 1.47395 1.08348 1.01962 1.71408 1.21546 0.96033 0.86834 1.00644 1.19094 0.72532 0.98156 0.94405 0.92526 1.22138 1.04871 0.98352 0.95623 1.21399 0.92130 1.38901 1.04152 0.92098 1.24887 0.96289 0.95293 0.97193 1.69858 1.00615 1.45842 1.36398 0.86434 0.78573 0.79177 0.83232 1.19770 1.20904 1.20829 1.20806 1.00875 0.90319 1.11105 1.20756 0.91446 0.97880 0.93475 1.15533 0.92073 0.85944 1.20993 1.25806 0.92666 0.92678 0.92119 1.81165 1.09488 1.11391 1.12498 0.90864 0.91016 0.91936 0.85704 0.93517 0.92703 0.90991 0.94857 0.88674 0.96670 0.92591 0.84337 0.85924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 9.61 36.01 0.35 -1.00 16 2 C 0.02 0.21 5.91 -104.25 -0.62 -0.41 16 3 C -0.23 -3.35 8.79 -39.45 -0.35 -3.70 16 4 C 0.27 4.74 6.54 -83.82 -0.55 4.19 16 5 N -0.59 -11.13 2.87 -173.31 -0.50 -11.63 16 6 C 0.09 1.47 9.50 59.85 0.57 2.04 16 7 C 0.26 5.73 2.57 -69.09 -0.18 5.55 16 8 H 0.06 1.34 5.28 -51.93 -0.27 1.07 16 9 C -0.15 -3.25 8.85 37.16 0.33 -2.92 16 10 C -0.53 -13.07 8.44 -34.44 -0.29 -13.36 16 11 H 0.06 1.54 7.79 -52.49 -0.41 1.13 16 12 C 0.07 1.67 5.30 -17.82 -0.09 1.57 16 13 N -0.89 -23.14 11.32 55.43 0.63 -22.51 16 14 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 15 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 C -0.21 -3.56 9.29 -39.45 -0.37 -3.93 16 19 C -0.01 -0.21 9.75 -39.21 -0.38 -0.59 16 20 C -0.14 -2.07 5.74 -106.80 -0.61 -2.68 16 21 C 0.28 4.35 13.79 -22.48 -0.31 4.04 16 22 N -0.47 -7.95 18.54 41.83 0.78 -7.17 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 25 H 0.06 0.73 7.08 -51.93 -0.37 0.36 16 26 H 0.13 1.64 6.27 -52.48 -0.33 1.31 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.71 6.42 -51.93 -0.33 0.38 16 29 H 0.07 1.15 6.19 -51.93 -0.32 0.83 16 30 H 0.03 0.68 6.53 -51.93 -0.34 0.34 16 31 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 32 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 34 H 0.14 2.52 5.72 -52.49 -0.30 2.22 16 35 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 293.91 15.07 4.43 4.43 Total: -1.00 -26.34 293.91 -6.42 -32.76 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.24 Total: 0.38 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -2.50 Total: -11.19 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.90 Total: -41.31 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -26.34 -6.42 -32.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132575283.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.741 kcal (2) G-P(sol) polarization free energy of solvation -26.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds