Wall clock time and date at job start Mon Mar 30 2020 05:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37670 * 120.04038 * 2 1 4 4 C 1.39156 * 120.07576 * 180.27488 * 3 2 1 5 5 N 1.39189 * 119.92541 * 179.72151 * 4 3 2 6 6 C 1.46509 * 119.99903 * 5.55219 * 5 4 3 7 7 C 1.46493 * 120.00409 * 185.55316 * 5 4 3 8 8 H 1.09004 * 109.47011 * 355.31728 * 7 5 4 9 9 C 1.53001 * 109.47010 * 235.32169 * 7 5 4 10 10 C 1.50694 * 109.47440 * 115.31698 * 7 5 4 11 11 H 1.07997 * 120.00121 * 0.02562 * 10 7 5 12 12 C 1.37879 * 120.00205 * 180.02562 * 10 7 5 13 13 N 1.31510 * 119.99858 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 120.00161 * 180.02562 * 12 10 7 15 15 H 1.48498 * 109.47153 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47464 * 119.99910 * 14 12 10 17 17 H 1.48503 * 109.46705 * 239.99715 * 14 12 10 18 18 C 1.39195 * 120.14917 * 359.44878 * 4 3 2 19 19 C 1.37628 * 120.07744 * 0.27331 * 18 4 3 20 20 C 1.39793 * 120.03581 * 179.72556 * 2 1 3 21 21 C 1.43199 * 120.07500 * 359.97438 * 20 2 1 22 22 N 3.48519 * 80.42241 * 179.70867 * 2 1 3 23 23 H 1.09000 * 109.46804 * 270.27757 * 1 2 3 24 24 H 1.09000 * 109.47035 * 30.27301 * 1 2 3 25 25 H 1.08996 * 109.47108 * 150.28214 * 1 2 3 26 26 H 1.08007 * 119.95990 * 0.02562 * 3 2 1 27 27 H 1.09001 * 109.46810 * 270.00126 * 6 5 4 28 28 H 1.09002 * 109.46712 * 29.99914 * 6 5 4 29 29 H 1.08993 * 109.47004 * 150.00004 * 6 5 4 30 30 H 1.08994 * 109.47148 * 299.99159 * 9 7 5 31 31 H 1.09005 * 109.46743 * 179.97438 * 9 7 5 32 32 H 1.08994 * 109.47311 * 59.99902 * 9 7 5 33 33 H 0.97007 * 120.00534 * 179.97438 * 13 12 10 34 34 H 1.08000 * 119.96050 * 180.29426 * 18 4 3 35 35 H 1.07997 * 120.03647 * 180.02562 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1918 0.0000 4 6 3.5878 1.1926 -0.0058 5 7 4.2814 2.3994 -0.0116 6 6 3.5520 3.6641 0.1111 7 6 5.7406 2.4050 -0.1405 8 1 6.1097 1.3793 -0.1360 9 6 6.3532 3.1725 1.0328 10 6 6.1281 3.0726 -1.4347 11 1 5.3639 3.4549 -2.0950 12 6 7.4584 3.1953 -1.7758 13 7 8.3891 2.7302 -0.9714 14 14 7.9388 4.0235 -3.3798 15 1 6.7142 4.4569 -4.0992 16 1 8.7886 5.2065 -3.0910 17 1 8.6956 3.0648 -4.2245 18 6 4.2876 -0.0105 0.0000 19 6 3.6050 -1.2056 0.0058 20 6 2.2067 -1.2102 0.0058 21 6 1.4931 -2.4517 0.0123 22 7 0.9271 -3.4366 0.0175 23 1 -0.3633 0.0050 1.0277 24 1 -0.3633 0.8875 -0.5181 25 1 -0.3633 -0.8925 -0.5094 26 1 1.6562 2.1271 0.0004 27 1 3.2807 4.0247 -0.8811 28 1 2.6485 3.5067 0.7001 29 1 4.1842 4.4016 0.6054 30 1 5.9843 4.1981 1.0283 31 1 7.4391 3.1762 0.9371 32 1 6.0730 2.6896 1.9689 33 1 9.3250 2.8162 -1.2115 34 1 5.3676 -0.0063 0.0003 35 1 4.1487 -2.1387 0.0107 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132575283.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:28 Heat of formation + Delta-G solvation = 42.946182 kcal Electronic energy + Delta-G solvation = -16968.929337 eV Core-core repulsion = 14352.423233 eV Total energy + Delta-G solvation = -2616.506104 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.75943 -38.39868 -36.93964 -34.91337 -33.51928 -32.06126 -30.25905 -28.12794 -27.32706 -27.02145 -23.64993 -22.76085 -21.23188 -19.35135 -18.29364 -17.79185 -16.96571 -16.34406 -15.47163 -15.38238 -15.12321 -14.86520 -14.60695 -14.43917 -13.97062 -13.90697 -13.62829 -13.39840 -13.14888 -13.00937 -12.90372 -12.76809 -12.70164 -12.58779 -12.31383 -12.10890 -12.05084 -11.53004 -11.11799 -10.47991 -10.40519 -9.64373 -8.25139 -7.89104 -6.26579 0.19971 0.60569 1.41151 1.45505 1.54263 1.79822 2.15398 2.37612 2.58687 3.10787 3.15580 3.19023 3.92000 4.00575 4.30653 4.51042 4.55116 4.67345 4.74336 4.82764 4.83529 4.87903 4.96594 5.04858 5.08903 5.13798 5.25716 5.34429 5.48991 5.55944 5.65484 5.69717 5.92443 5.97671 6.21407 6.48984 6.65508 6.88139 6.90904 7.44551 8.90303 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.030627 B = 0.005656 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.020853 B = 4949.554658 C = 5184.570679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.022 3.978 3 C -0.217 4.217 4 C 0.253 3.747 5 N -0.604 5.604 6 C 0.092 3.908 7 C 0.263 3.737 8 H 0.036 0.964 9 C -0.139 4.139 10 C -0.535 4.535 11 H 0.052 0.948 12 C 0.023 3.977 13 N -0.913 5.913 14 Si 0.952 3.048 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.284 1.284 18 C -0.228 4.228 19 C -0.008 4.008 20 C -0.140 4.140 21 C 0.296 3.704 22 N -0.490 5.490 23 H 0.089 0.911 24 H 0.092 0.908 25 H 0.057 0.943 26 H 0.148 0.852 27 H 0.044 0.956 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.264 0.736 34 H 0.119 0.881 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.421 0.524 2.919 10.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.018 3.982 3 C -0.240 4.240 4 C 0.142 3.858 5 N -0.306 5.306 6 C -0.050 4.050 7 C 0.161 3.839 8 H 0.053 0.947 9 C -0.198 4.198 10 C -0.573 4.573 11 H 0.070 0.930 12 C -0.177 4.177 13 N -0.552 5.552 14 Si 0.779 3.221 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.210 1.210 18 C -0.251 4.251 19 C -0.029 4.029 20 C -0.146 4.146 21 C -0.016 4.016 22 N -0.168 5.168 23 H 0.108 0.892 24 H 0.111 0.889 25 H 0.076 0.924 26 H 0.166 0.834 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.961 -0.754 2.942 11.375 hybrid contribution 1.212 0.753 -0.901 1.688 sum -9.749 -0.001 2.042 9.960 Atomic orbital electron populations 1.20928 0.89156 1.03572 1.03746 1.19752 0.96560 0.90335 0.91557 1.20525 0.90946 0.98710 1.13821 1.18461 0.92044 0.86443 0.88821 1.47202 1.07104 1.03414 1.72910 1.21668 0.96836 0.85497 1.01039 1.18747 0.75023 0.96606 0.93527 0.94667 1.21947 1.02983 0.98786 0.96058 1.21647 0.91988 1.38590 1.05113 0.92996 1.25537 0.96478 0.96000 0.99687 1.69967 1.00714 1.46874 1.37641 0.85589 0.78101 0.78261 0.80152 1.19591 1.20539 1.21007 1.20741 1.00121 0.91367 1.12879 1.20874 0.91766 0.97881 0.92427 1.15641 0.91932 0.86213 1.20828 1.25752 0.92070 0.92361 0.91418 1.81191 1.10317 1.11999 1.13285 0.89225 0.88899 0.92378 0.83406 0.93758 0.89468 0.91577 0.94257 0.91344 0.95385 0.92678 0.86363 0.84340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 9.61 71.24 0.68 -1.52 16 2 C 0.02 0.54 5.91 -19.62 -0.12 0.42 16 3 C -0.22 -5.87 8.79 22.36 0.20 -5.67 16 4 C 0.25 8.55 6.54 38.42 0.25 8.81 16 5 N -0.60 -22.39 2.87 -702.23 -2.02 -24.41 16 6 C 0.09 2.76 9.50 127.77 1.21 3.97 16 7 C 0.26 11.84 2.57 44.24 0.11 11.95 16 8 H 0.04 1.74 5.28 -2.38 -0.01 1.73 16 9 C -0.14 -6.03 8.85 71.98 0.64 -5.39 16 10 C -0.53 -26.78 8.44 25.60 0.22 -26.56 16 11 H 0.05 2.64 7.79 -2.91 -0.02 2.61 16 12 C 0.02 1.17 5.30 84.66 0.45 1.62 16 13 N -0.91 -48.44 11.32 21.45 0.24 -48.20 16 14 Si 0.95 41.08 29.54 68.60 2.03 43.10 16 15 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 16 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 18 C -0.23 -7.82 9.29 22.36 0.21 -7.61 16 19 C -0.01 -0.24 9.75 22.51 0.22 -0.02 16 20 C -0.14 -3.88 5.74 -21.27 -0.12 -4.00 16 21 C 0.30 8.62 13.79 88.33 1.22 9.83 16 22 N -0.49 -15.78 18.54 19.00 0.35 -15.43 16 23 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.09 1.39 8.09 -2.39 -0.02 1.37 16 25 H 0.06 1.17 7.08 -2.39 -0.02 1.16 16 26 H 0.15 3.28 6.27 -2.91 -0.02 3.26 16 27 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.09 2.00 6.42 -2.39 -0.02 1.98 16 29 H 0.07 2.03 6.19 -2.39 -0.01 2.01 16 30 H 0.04 1.60 6.53 -2.39 -0.02 1.58 16 31 H 0.07 3.34 6.07 -2.38 -0.01 3.33 16 32 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.26 13.40 8.31 -92.70 -0.77 12.63 16 34 H 0.12 4.51 5.72 -2.91 -0.02 4.49 16 35 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 Total: -1.00 -55.99 293.91 6.87 -49.12 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 1.10 Total: 9.98 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 5.17 Total: -14.17 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -1.42 Total: -88.04 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.10 kcal Total: -55.99 6.87 -49.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132575283.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.064 kcal (2) G-P(sol) polarization free energy of solvation -55.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds