Wall clock time and date at job start Mon Mar 30 2020 06:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47111 * 2 1 4 4 C 1.50700 * 109.47462 * 120.00829 * 2 1 3 5 5 H 1.08000 * 120.00294 * 120.00093 * 4 2 1 6 6 C 1.37877 * 119.99542 * 299.99974 * 4 2 1 7 7 N 1.31516 * 120.00317 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00003 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47287 * 59.99865 * 8 6 4 10 10 H 1.48502 * 109.47228 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.46745 * 300.00000 * 8 6 4 12 12 N 1.46901 * 109.47270 * 240.00650 * 2 1 3 13 13 C 1.46904 * 111.00111 * 84.99620 * 12 2 1 14 14 C 1.50699 * 109.47105 * 180.02562 * 13 12 2 15 15 C 1.36661 * 120.11840 * 260.02119 * 14 13 12 16 16 C 1.38784 * 120.52999 * 179.97438 * 15 14 13 17 17 C 1.37794 * 120.66480 * 359.63666 * 16 15 14 18 18 C 1.39076 * 119.77815 * 0.55581 * 17 16 15 19 19 N 1.37691 * 133.51673 * 179.30710 * 18 17 16 20 20 H 0.97004 * 125.05965 * 359.97438 * 19 18 17 21 21 C 1.36832 * 109.87778 * 180.02562 * 19 18 17 22 22 C 1.34239 * 109.93788 * 0.02562 * 21 19 18 23 23 C 1.39595 * 120.11854 * 80.00120 * 14 13 12 24 24 H 1.09000 * 109.47503 * 59.99704 * 1 2 3 25 25 H 1.09006 * 109.47019 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46956 * 299.98870 * 1 2 3 27 27 H 0.96994 * 120.00518 * 179.97438 * 7 6 4 28 28 H 1.00901 * 111.00129 * 208.95158 * 12 2 1 29 29 H 1.09001 * 109.46887 * 60.00117 * 13 12 2 30 30 H 1.09003 * 109.46990 * 300.00078 * 13 12 2 31 31 H 1.08002 * 119.73207 * 359.95975 * 15 14 13 32 32 H 1.07997 * 119.66820 * 180.02562 * 16 15 14 33 33 H 1.07999 * 120.10807 * 179.89257 * 17 16 15 34 34 H 1.08004 * 125.03373 * 179.97438 * 21 19 18 35 35 H 1.08002 * 126.49782 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6534 -1.5886 1.1311 6 6 1.6993 -0.2396 2.4826 7 7 0.9436 0.8299 2.6035 8 14 2.3226 -1.1199 4.0078 9 1 3.8076 -1.1193 4.0076 10 1 1.8270 -0.4204 5.2204 11 1 1.8281 -2.5202 4.0078 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5873 -0.5215 -3.5561 15 6 3.8957 -0.4082 -3.9341 16 6 4.3699 -1.0902 -5.0459 17 6 3.5333 -1.8990 -5.7839 18 6 2.1970 -2.0258 -5.4197 19 7 1.1337 -2.7259 -5.9442 20 1 1.1731 -3.2926 -6.7305 21 6 0.0129 -2.5025 -5.1917 22 6 0.3004 -1.6704 -4.1782 23 6 1.7203 -1.3294 -4.2938 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5136 0.8901 27 1 0.7090 1.1610 3.4844 28 1 2.9174 -1.1204 -1.0289 29 1 2.7588 1.0464 -2.1182 30 1 1.0870 0.6165 -2.5525 31 1 4.5660 0.2173 -3.3632 32 1 5.4066 -0.9910 -5.3319 33 1 3.9113 -2.4242 -6.6485 34 1 -0.9593 -2.9313 -5.3850 35 1 -0.3860 -1.3164 -3.4233 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134974551.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:03 Heat of formation + Delta-G solvation = 54.599428 kcal Electronic energy + Delta-G solvation = -16897.344665 eV Core-core repulsion = 14281.343884 eV Total energy + Delta-G solvation = -2616.000781 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.96179 -37.16882 -35.54153 -32.95332 -31.42226 -29.58139 -28.84905 -27.64228 -25.28953 -24.12247 -21.62786 -21.55688 -20.07722 -19.65820 -17.50692 -16.36266 -15.88701 -15.16542 -14.88002 -14.43782 -14.25624 -13.73718 -13.44373 -12.95665 -12.82399 -12.54290 -12.18658 -11.78077 -11.36931 -11.27544 -11.19140 -10.91186 -10.71785 -10.49945 -10.19744 -10.06128 -9.83327 -9.32115 -8.77014 -8.42081 -7.97105 -7.43669 -7.13475 -5.97504 -4.03598 1.37112 1.90020 2.99625 3.30371 3.34771 3.38763 3.42080 4.16052 4.45390 4.95715 5.05912 5.20999 5.33530 5.37817 5.52684 5.61249 5.79474 5.87392 6.02008 6.12602 6.25252 6.39358 6.47291 6.71939 6.90056 6.95944 6.96708 7.15783 7.21049 7.30439 7.42523 7.57749 7.70139 7.83734 7.96614 8.33828 8.47472 8.74976 9.07631 9.62035 11.08739 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.032434 B = 0.005263 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.074121 B = 5318.975331 C = 5666.949584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.211 3.789 3 H 0.000 1.000 4 C -0.517 4.517 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.678 5.678 13 C 0.097 3.903 14 C -0.015 4.015 15 C -0.152 4.152 16 C -0.096 4.096 17 C -0.144 4.144 18 C 0.090 3.910 19 N -0.602 5.602 20 H 0.410 0.590 21 C 0.029 3.971 22 C -0.174 4.174 23 C -0.088 4.088 24 H 0.004 0.996 25 H 0.031 0.969 26 H 0.079 0.921 27 H 0.261 0.739 28 H 0.331 0.669 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.166 0.834 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.597 -4.476 -16.620 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.104 3.896 3 H 0.018 0.982 4 C -0.555 4.555 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.309 5.309 13 C -0.032 4.032 14 C -0.016 4.016 15 C -0.172 4.172 16 C -0.115 4.115 17 C -0.166 4.166 18 C -0.016 4.016 19 N -0.206 5.206 20 H 0.245 0.755 21 C -0.096 4.096 22 C -0.199 4.199 23 C -0.093 4.093 24 H 0.023 0.977 25 H 0.050 0.950 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.148 0.852 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.131 0.869 34 H 0.183 0.817 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.831 -4.664 -16.705 17.364 hybrid contribution 1.048 -0.251 0.735 1.304 sum 1.879 -4.914 -15.970 16.814 Atomic orbital electron populations 1.21702 0.97897 0.99293 0.99253 1.19116 0.92636 0.92293 0.85553 0.98228 1.21237 1.31361 1.12446 0.90469 0.92307 1.24909 0.95095 0.95001 0.98970 1.69888 1.36718 1.22897 1.23478 0.86593 0.79066 0.79785 0.82124 1.20362 1.21341 1.20238 1.60750 1.32163 1.32629 1.05362 1.20863 0.99880 0.93215 0.89253 1.19285 0.92357 0.95019 0.94948 1.20569 0.95226 1.02907 0.98531 1.20703 0.98747 0.96714 0.95382 1.19876 0.90414 1.03952 1.02309 1.18274 0.89590 0.97421 0.96356 1.41699 1.07678 1.43608 1.27626 0.75450 1.21742 0.90976 1.02358 0.94514 1.21810 0.94578 1.03027 1.00498 1.18983 0.94198 1.00221 0.95857 0.97706 0.94978 0.90215 0.92934 0.85227 0.95555 0.90988 0.86322 0.86216 0.86948 0.81720 0.83416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.11 9.19 37.16 0.34 -2.77 16 2 C 0.21 5.47 2.60 -68.86 -0.18 5.29 16 3 H 0.00 0.00 7.80 -51.93 -0.40 -0.40 16 4 C -0.52 -14.43 8.59 -34.44 -0.30 -14.73 16 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.74 11.32 55.43 0.63 -25.12 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.68 -15.11 6.29 -109.22 -0.69 -15.79 16 13 C 0.10 1.88 5.52 -4.97 -0.03 1.85 16 14 C -0.02 -0.26 5.39 -104.69 -0.56 -0.83 16 15 C -0.15 -2.33 9.60 -39.95 -0.38 -2.72 16 16 C -0.10 -1.27 10.01 -39.54 -0.40 -1.67 16 17 C -0.14 -1.88 10.08 -39.43 -0.40 -2.28 16 18 C 0.09 1.31 7.28 -83.99 -0.61 0.70 16 19 N -0.60 -6.99 6.07 -10.65 -0.06 -7.06 16 20 H 0.41 3.27 8.96 -40.82 -0.37 2.90 16 21 C 0.03 0.35 11.81 -16.73 -0.20 0.15 16 22 C -0.17 -2.71 10.94 -37.67 -0.41 -3.12 16 23 C -0.09 -1.48 6.16 -105.14 -0.65 -2.12 16 24 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.08 2.18 6.07 -51.93 -0.32 1.87 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.33 7.37 8.22 -39.29 -0.32 7.04 16 29 H 0.03 0.51 7.90 -51.93 -0.41 0.10 16 30 H 0.07 1.42 7.44 -51.93 -0.39 1.03 16 31 H 0.12 1.68 8.02 -52.49 -0.42 1.26 16 32 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 33 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.17 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.15 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 295.17 15.07 4.45 4.45 Total: -1.00 -30.84 295.17 -9.22 -40.06 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -4.66 Total: 7.53 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -3.86 Total: -20.61 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: -0.12 Total: -47.97 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.84 -9.22 -40.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134974551.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.659 kcal (2) G-P(sol) polarization free energy of solvation -30.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds