Wall clock time and date at job start Mon Mar 30 2020 06:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47111 * 2 1 4 4 C 1.50700 * 109.47462 * 120.00829 * 2 1 3 5 5 H 1.08000 * 120.00294 * 120.00093 * 4 2 1 6 6 C 1.37877 * 119.99542 * 299.99974 * 4 2 1 7 7 N 1.31516 * 120.00317 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00003 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47287 * 59.99865 * 8 6 4 10 10 H 1.48502 * 109.47228 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.46745 * 300.00000 * 8 6 4 12 12 N 1.46901 * 109.47270 * 240.00650 * 2 1 3 13 13 C 1.46904 * 111.00111 * 84.99620 * 12 2 1 14 14 C 1.50699 * 109.47105 * 180.02562 * 13 12 2 15 15 C 1.36661 * 120.11840 * 260.02119 * 14 13 12 16 16 C 1.38784 * 120.52999 * 179.97438 * 15 14 13 17 17 C 1.37794 * 120.66480 * 359.63666 * 16 15 14 18 18 C 1.39076 * 119.77815 * 0.55581 * 17 16 15 19 19 N 1.37691 * 133.51673 * 179.30710 * 18 17 16 20 20 H 0.97004 * 125.05965 * 359.97438 * 19 18 17 21 21 C 1.36832 * 109.87778 * 180.02562 * 19 18 17 22 22 C 1.34239 * 109.93788 * 0.02562 * 21 19 18 23 23 C 1.39595 * 120.11854 * 80.00120 * 14 13 12 24 24 H 1.09000 * 109.47503 * 59.99704 * 1 2 3 25 25 H 1.09006 * 109.47019 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46956 * 299.98870 * 1 2 3 27 27 H 0.96994 * 120.00518 * 179.97438 * 7 6 4 28 28 H 1.00901 * 111.00129 * 208.95158 * 12 2 1 29 29 H 1.09001 * 109.46887 * 60.00117 * 13 12 2 30 30 H 1.09003 * 109.46990 * 300.00078 * 13 12 2 31 31 H 1.08002 * 119.73207 * 359.95975 * 15 14 13 32 32 H 1.07997 * 119.66820 * 180.02562 * 16 15 14 33 33 H 1.07999 * 120.10807 * 179.89257 * 17 16 15 34 34 H 1.08004 * 125.03373 * 179.97438 * 21 19 18 35 35 H 1.08002 * 126.49782 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.6534 -1.5886 1.1311 6 6 1.6993 -0.2396 2.4826 7 7 0.9436 0.8299 2.6035 8 14 2.3226 -1.1199 4.0078 9 1 3.8076 -1.1193 4.0076 10 1 1.8270 -0.4204 5.2204 11 1 1.8281 -2.5202 4.0078 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5873 -0.5215 -3.5561 15 6 3.8957 -0.4082 -3.9341 16 6 4.3699 -1.0902 -5.0459 17 6 3.5333 -1.8990 -5.7839 18 6 2.1970 -2.0258 -5.4197 19 7 1.1337 -2.7259 -5.9442 20 1 1.1731 -3.2926 -6.7305 21 6 0.0129 -2.5025 -5.1917 22 6 0.3004 -1.6704 -4.1782 23 6 1.7203 -1.3294 -4.2938 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5136 0.8901 27 1 0.7090 1.1610 3.4844 28 1 2.9174 -1.1204 -1.0289 29 1 2.7588 1.0464 -2.1182 30 1 1.0870 0.6165 -2.5525 31 1 4.5660 0.2173 -3.3632 32 1 5.4066 -0.9910 -5.3319 33 1 3.9113 -2.4242 -6.6485 34 1 -0.9593 -2.9313 -5.3850 35 1 -0.3860 -1.3164 -3.4233 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134974551.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:01 Heat of formation + Delta-G solvation = 35.003021 kcal Electronic energy + Delta-G solvation = -16898.194429 eV Core-core repulsion = 14281.343884 eV Total energy + Delta-G solvation = -2616.850545 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.02028 -38.48941 -37.20131 -34.74426 -32.93566 -30.95908 -30.02255 -29.17297 -27.37348 -25.70469 -22.82533 -22.64062 -21.72768 -21.13744 -18.89091 -18.10429 -17.03312 -16.84748 -16.23468 -15.97167 -15.58777 -15.16937 -15.09494 -14.55167 -14.10976 -13.87189 -13.48773 -13.40534 -13.10240 -12.77967 -12.73043 -12.50350 -12.40686 -12.21887 -12.13090 -12.03873 -11.43224 -10.91122 -10.56494 -10.45393 -9.08018 -9.00956 -8.49037 -8.11838 -6.26677 0.26719 0.77752 1.42761 1.45169 1.52884 1.93773 2.37714 2.42559 2.99349 3.16131 3.75988 3.89552 4.13015 4.21893 4.35190 4.44367 4.54155 4.68961 4.70571 4.84549 4.89144 5.04790 5.08784 5.18563 5.22244 5.31397 5.47532 5.62860 5.67190 5.78628 5.86413 5.87388 5.98675 6.22732 6.32863 6.48591 6.77485 6.86255 6.99747 7.43519 8.93492 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.032434 B = 0.005263 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.074121 B = 5318.975331 C = 5666.949584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.216 3.784 3 H -0.032 1.032 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.272 1.272 12 N -0.673 5.673 13 C 0.107 3.893 14 C -0.049 4.049 15 C -0.156 4.156 16 C -0.102 4.102 17 C -0.132 4.132 18 C 0.076 3.924 19 N -0.586 5.586 20 H 0.431 0.569 21 C 0.063 3.937 22 C -0.228 4.228 23 C -0.115 4.115 24 H 0.019 0.981 25 H 0.027 0.973 26 H 0.057 0.943 27 H 0.263 0.737 28 H 0.329 0.671 29 H 0.020 0.980 30 H 0.060 0.940 31 H 0.121 0.879 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.208 0.792 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.369 -6.388 -18.397 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 H -0.015 1.015 4 C -0.577 4.577 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.197 1.197 12 N -0.304 5.304 13 C -0.022 4.022 14 C -0.050 4.050 15 C -0.176 4.176 16 C -0.121 4.121 17 C -0.152 4.152 18 C -0.031 4.031 19 N -0.191 5.191 20 H 0.271 0.729 21 C -0.063 4.063 22 C -0.253 4.253 23 C -0.121 4.121 24 H 0.038 0.962 25 H 0.046 0.954 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.146 0.854 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.139 0.861 32 H 0.170 0.830 33 H 0.167 0.833 34 H 0.225 0.775 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.615 -6.592 -18.526 19.730 hybrid contribution 0.787 0.333 1.166 1.445 sum 2.401 -6.258 -17.361 18.610 Atomic orbital electron populations 1.21506 0.97623 0.98767 0.98884 1.18938 0.92842 0.90668 0.86807 1.01485 1.21534 1.31826 1.12693 0.91632 0.92485 1.25740 0.95122 0.95665 1.02010 1.70019 1.37405 1.24019 1.24262 0.85520 0.78724 0.78604 0.78203 1.19571 1.20721 1.19714 1.60666 1.32019 1.32900 1.04778 1.20730 0.99214 0.92898 0.89377 1.19133 0.93731 0.97097 0.95034 1.20756 0.94441 1.03002 0.99381 1.21049 1.00440 0.96164 0.94451 1.20325 0.89541 1.02735 1.02618 1.18492 0.90831 0.97778 0.96047 1.41712 1.06673 1.42859 1.27839 0.72938 1.22267 0.92303 0.99464 0.92273 1.21829 0.94444 1.06386 1.02689 1.19273 0.94923 1.00823 0.97039 0.96157 0.95381 0.92384 0.92778 0.85389 0.96178 0.92204 0.86058 0.82981 0.83299 0.77539 0.85297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.75 9.19 71.98 0.66 -5.08 16 2 C 0.22 11.65 2.60 44.17 0.11 11.76 16 3 H -0.03 -1.92 7.80 -2.39 -0.02 -1.94 16 4 C -0.54 -30.81 8.59 25.60 0.22 -30.59 16 5 H 0.06 3.21 7.62 -2.91 -0.02 3.18 16 6 C 0.01 0.78 5.30 84.65 0.45 1.23 16 7 N -0.92 -54.14 11.32 21.45 0.24 -53.90 16 8 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 N -0.67 -31.31 6.29 -499.45 -3.14 -34.45 16 13 C 0.11 4.37 5.52 85.56 0.47 4.84 16 14 C -0.05 -1.74 5.39 -19.91 -0.11 -1.85 16 15 C -0.16 -4.72 9.60 22.03 0.21 -4.51 16 16 C -0.10 -2.45 10.01 22.30 0.22 -2.22 16 17 C -0.13 -2.99 10.08 22.37 0.23 -2.76 16 18 C 0.08 2.04 7.28 39.03 0.28 2.32 16 19 N -0.59 -11.68 6.07 -187.61 -1.14 -12.82 16 20 H 0.43 4.99 8.96 -92.71 -0.83 4.16 16 21 C 0.06 1.38 11.81 83.00 0.98 2.36 16 22 C -0.23 -7.15 10.94 23.51 0.26 -6.89 16 23 C -0.12 -3.89 6.16 -20.20 -0.12 -4.01 16 24 H 0.02 0.95 7.45 -2.39 -0.02 0.93 16 25 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 27 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 28 H 0.33 15.25 8.22 -89.69 -0.74 14.51 16 29 H 0.02 0.83 7.90 -2.39 -0.02 0.81 16 30 H 0.06 2.52 7.44 -2.39 -0.02 2.51 16 31 H 0.12 3.46 8.02 -2.91 -0.02 3.44 16 32 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 34 H 0.21 2.62 8.06 -2.91 -0.02 2.59 16 35 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -68.37 295.17 1.39 -66.98 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -0.46 Total: 23.13 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 3.87 Total: -35.42 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -4.04 Total: -101.16 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -68.37 1.39 -66.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134974551.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.983 kcal (2) G-P(sol) polarization free energy of solvation -68.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds