Wall clock time and date at job start Mon Mar 30 2020 06:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46828 * 2 1 4 4 C 1.50697 * 109.47203 * 239.99961 * 2 1 3 5 5 H 1.07997 * 120.00191 * 245.46617 * 4 2 1 6 6 C 1.37882 * 119.99879 * 65.46057 * 4 2 1 7 7 N 1.31510 * 120.00256 * 9.54860 * 6 4 2 8 8 Si 1.86802 * 119.99876 * 189.55728 * 6 4 2 9 9 H 1.48496 * 109.47410 * 84.99198 * 8 6 4 10 10 H 1.48507 * 109.46839 * 204.99359 * 8 6 4 11 11 H 1.48508 * 109.46893 * 324.98892 * 8 6 4 12 12 N 1.46898 * 109.46907 * 120.00110 * 2 1 3 13 13 C 1.46905 * 110.99998 * 274.99641 * 12 2 1 14 14 C 1.50692 * 109.46977 * 180.02562 * 13 12 2 15 15 C 1.36665 * 120.12029 * 260.00097 * 14 13 12 16 16 C 1.38790 * 120.53389 * 180.02562 * 15 14 13 17 17 C 1.37795 * 120.66213 * 359.97438 * 16 15 14 18 18 C 1.39084 * 119.77724 * 359.97438 * 17 16 15 19 19 N 1.37694 * 133.50908 * 179.97438 * 18 17 16 20 20 H 0.97002 * 125.06353 * 0.02978 * 19 18 17 21 21 C 1.36835 * 109.87402 * 180.02562 * 19 18 17 22 22 C 1.34238 * 109.93586 * 359.97438 * 21 19 18 23 23 C 1.39593 * 120.11921 * 80.26233 * 14 13 12 24 24 H 1.08998 * 109.47410 * 303.69505 * 1 2 3 25 25 H 1.09001 * 109.47488 * 63.69121 * 1 2 3 26 26 H 1.08996 * 109.47227 * 183.68877 * 1 2 3 27 27 H 0.96995 * 120.00093 * 179.97438 * 7 6 4 28 28 H 1.00897 * 111.00179 * 38.95327 * 12 2 1 29 29 H 1.09000 * 109.46811 * 60.00109 * 13 12 2 30 30 H 1.08998 * 109.47169 * 300.00460 * 13 12 2 31 31 H 1.08007 * 119.73177 * 359.97438 * 15 14 13 32 32 H 1.07990 * 119.67019 * 179.97438 * 16 15 14 33 33 H 1.07994 * 120.11173 * 180.02562 * 17 16 15 34 34 H 1.07992 * 125.03159 * 179.97438 * 21 19 18 35 35 H 1.08005 * 126.49778 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5785 -1.6371 -1.1338 6 6 1.7946 -0.1773 -2.4796 7 7 1.2991 1.0355 -2.5936 8 14 2.1760 -1.1780 -4.0101 9 1 1.0241 -2.0610 -4.3241 10 1 2.4227 -0.2613 -5.1521 11 1 3.3847 -2.0071 -3.7709 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5884 -0.5215 3.5557 15 6 1.7104 -0.9702 4.5020 16 6 2.1671 -1.6560 5.6188 17 6 3.5124 -1.8974 5.7938 18 6 4.4237 -1.4507 4.8428 19 7 5.7938 -1.5310 4.7316 20 1 6.3809 -1.9592 5.3741 21 6 6.2038 -0.9166 3.5797 22 6 5.1424 -0.4286 2.9185 23 6 3.9562 -0.7503 3.7156 24 1 -0.3634 0.5701 0.8550 25 1 -0.3634 0.4555 -0.9212 26 1 -0.3633 -1.0255 0.0661 27 1 1.1322 1.4106 -3.4723 28 1 1.4495 -1.4979 1.4100 29 1 1.0871 0.6163 2.5525 30 1 2.7588 1.0462 2.1182 31 1 0.6527 -0.7889 4.3801 32 1 1.4610 -2.0040 6.3581 33 1 3.8579 -2.4323 6.6660 34 1 7.2294 -0.8362 3.2512 35 1 5.1602 0.1055 1.9799 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134974570.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:07 Heat of formation + Delta-G solvation = 54.422143 kcal Electronic energy + Delta-G solvation = -16886.210231 eV Core-core repulsion = 14270.201763 eV Total energy + Delta-G solvation = -2616.008469 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.94391 -37.18812 -35.61378 -32.90187 -31.46276 -29.57936 -28.85822 -27.64688 -25.08502 -24.16184 -21.60537 -21.55284 -20.16873 -19.97921 -17.46957 -16.24728 -15.85004 -15.16269 -14.69660 -14.54231 -14.23051 -13.81052 -13.42890 -12.79063 -12.71198 -12.57136 -12.17246 -11.77014 -11.60427 -11.35790 -11.17728 -10.89288 -10.77893 -10.63493 -10.32395 -10.13149 -9.74302 -9.30713 -8.97267 -8.26824 -7.96125 -7.42558 -7.10827 -5.94191 -3.93075 1.37914 1.90252 3.02583 3.32529 3.37576 3.43361 3.47598 4.16341 4.51364 4.96238 5.09065 5.20338 5.38140 5.38439 5.53632 5.60205 5.78876 5.88870 6.02139 6.12307 6.25141 6.40938 6.48213 6.69242 6.71902 6.81924 6.93539 6.98612 7.09877 7.16134 7.41599 7.44751 7.66853 7.72341 7.96138 8.29327 8.64525 8.70128 9.13797 9.70201 11.15059 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029046 B = 0.005598 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.751506 B = 5000.589360 C = 5606.218131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.209 3.791 3 H 0.041 0.959 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.892 3.108 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.672 5.672 13 C 0.097 3.903 14 C -0.015 4.015 15 C -0.154 4.154 16 C -0.097 4.097 17 C -0.144 4.144 18 C 0.091 3.909 19 N -0.602 5.602 20 H 0.410 0.590 21 C 0.028 3.972 22 C -0.172 4.172 23 C -0.087 4.087 24 H 0.010 0.990 25 H 0.070 0.930 26 H 0.029 0.971 27 H 0.259 0.741 28 H 0.324 0.676 29 H 0.025 0.975 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.166 0.834 35 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.710 -3.667 15.633 17.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.101 3.899 3 H 0.059 0.941 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.720 3.280 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.200 1.200 12 N -0.302 5.302 13 C -0.032 4.032 14 C -0.016 4.016 15 C -0.174 4.174 16 C -0.116 4.116 17 C -0.165 4.165 18 C -0.016 4.016 19 N -0.206 5.206 20 H 0.245 0.755 21 C -0.096 4.096 22 C -0.197 4.197 23 C -0.092 4.092 24 H 0.029 0.971 25 H 0.089 0.911 26 H 0.048 0.952 27 H 0.069 0.931 28 H 0.141 0.859 29 H 0.043 0.957 30 H 0.091 0.909 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.130 0.870 34 H 0.183 0.817 35 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.441 -3.469 15.350 17.004 hybrid contribution -0.541 -0.624 -0.420 0.927 sum 5.899 -4.093 14.930 16.567 Atomic orbital electron populations 1.22388 1.01223 0.98499 1.00151 1.19215 0.89037 0.95024 0.86575 0.94147 1.21109 1.34314 1.08144 0.89656 0.91995 1.24935 0.95730 0.94738 0.98928 1.69965 1.45987 1.14067 1.23577 0.86608 0.78661 0.80045 0.82645 1.20798 1.21520 1.19958 1.60835 1.58037 1.08643 1.02665 1.20857 0.98215 0.95283 0.88864 1.19279 0.91119 0.96051 0.95130 1.20546 0.99242 1.02269 0.95336 1.20691 0.94185 0.98989 0.97764 1.19875 0.92254 1.05601 0.98810 1.18280 0.83492 1.01968 0.97889 1.41704 1.05307 1.51795 1.21827 0.75466 1.21753 0.99437 1.00474 0.87982 1.21859 0.89990 1.06685 1.01155 1.18995 0.93210 1.02107 0.94936 0.97115 0.91087 0.95184 0.93130 0.85927 0.95650 0.90853 0.86449 0.86265 0.86963 0.81693 0.83191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 9.04 37.16 0.34 -3.57 16 2 C 0.21 5.32 2.44 -68.87 -0.17 5.15 16 3 H 0.04 1.14 7.74 -51.93 -0.40 0.73 16 4 C -0.49 -13.86 8.76 -34.44 -0.30 -14.16 16 5 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 6 C 0.06 1.62 5.17 -17.82 -0.09 1.52 16 7 N -0.90 -26.11 12.16 55.43 0.67 -25.44 16 8 Si 0.89 21.76 29.55 -169.99 -5.02 16.74 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.67 -14.76 6.22 -109.22 -0.68 -15.44 16 13 C 0.10 1.85 5.52 -4.98 -0.03 1.83 16 14 C -0.01 -0.25 5.39 -104.69 -0.56 -0.82 16 15 C -0.15 -2.32 9.60 -39.95 -0.38 -2.70 16 16 C -0.10 -1.27 10.01 -39.54 -0.40 -1.67 16 17 C -0.14 -1.88 10.08 -39.43 -0.40 -2.27 16 18 C 0.09 1.33 7.28 -83.99 -0.61 0.71 16 19 N -0.60 -7.13 6.07 -10.65 -0.06 -7.19 16 20 H 0.41 3.34 8.96 -40.82 -0.37 2.98 16 21 C 0.03 0.35 11.81 -16.73 -0.20 0.15 16 22 C -0.17 -2.75 10.94 -37.67 -0.41 -3.17 16 23 C -0.09 -1.49 6.16 -105.14 -0.65 -2.13 16 24 H 0.01 0.22 7.55 -51.93 -0.39 -0.18 16 25 H 0.07 1.87 6.83 -51.93 -0.35 1.52 16 26 H 0.03 0.67 8.07 -51.93 -0.42 0.26 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.32 6.91 8.42 -39.29 -0.33 6.57 16 29 H 0.03 0.47 7.35 -51.93 -0.38 0.09 16 30 H 0.07 1.45 8.05 -51.93 -0.42 1.03 16 31 H 0.12 1.61 8.02 -52.48 -0.42 1.19 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 33 H 0.11 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.15 2.51 8.06 -52.48 -0.42 2.08 16 LS Contribution 296.89 15.07 4.47 4.47 Total: -1.00 -30.97 296.89 -9.20 -40.18 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -4.72 Total: 7.80 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -3.86 Total: -21.12 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.07 Total: -48.08 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.97 -9.20 -40.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134974570.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.597 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds