Wall clock time and date at job start Mon Mar 30 2020 06:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46828 * 2 1 4 4 C 1.50697 * 109.47203 * 239.99961 * 2 1 3 5 5 H 1.07997 * 120.00191 * 245.46617 * 4 2 1 6 6 C 1.37882 * 119.99879 * 65.46057 * 4 2 1 7 7 N 1.31510 * 120.00256 * 9.54860 * 6 4 2 8 8 Si 1.86802 * 119.99876 * 189.55728 * 6 4 2 9 9 H 1.48496 * 109.47410 * 84.99198 * 8 6 4 10 10 H 1.48507 * 109.46839 * 204.99359 * 8 6 4 11 11 H 1.48508 * 109.46893 * 324.98892 * 8 6 4 12 12 N 1.46898 * 109.46907 * 120.00110 * 2 1 3 13 13 C 1.46905 * 110.99998 * 274.99641 * 12 2 1 14 14 C 1.50692 * 109.46977 * 180.02562 * 13 12 2 15 15 C 1.36665 * 120.12029 * 260.00097 * 14 13 12 16 16 C 1.38790 * 120.53389 * 180.02562 * 15 14 13 17 17 C 1.37795 * 120.66213 * 359.97438 * 16 15 14 18 18 C 1.39084 * 119.77724 * 359.97438 * 17 16 15 19 19 N 1.37694 * 133.50908 * 179.97438 * 18 17 16 20 20 H 0.97002 * 125.06353 * 0.02978 * 19 18 17 21 21 C 1.36835 * 109.87402 * 180.02562 * 19 18 17 22 22 C 1.34238 * 109.93586 * 359.97438 * 21 19 18 23 23 C 1.39593 * 120.11921 * 80.26233 * 14 13 12 24 24 H 1.08998 * 109.47410 * 303.69505 * 1 2 3 25 25 H 1.09001 * 109.47488 * 63.69121 * 1 2 3 26 26 H 1.08996 * 109.47227 * 183.68877 * 1 2 3 27 27 H 0.96995 * 120.00093 * 179.97438 * 7 6 4 28 28 H 1.00897 * 111.00179 * 38.95327 * 12 2 1 29 29 H 1.09000 * 109.46811 * 60.00109 * 13 12 2 30 30 H 1.08998 * 109.47169 * 300.00460 * 13 12 2 31 31 H 1.08007 * 119.73177 * 359.97438 * 15 14 13 32 32 H 1.07990 * 119.67019 * 179.97438 * 16 15 14 33 33 H 1.07994 * 120.11173 * 180.02562 * 17 16 15 34 34 H 1.07992 * 125.03159 * 179.97438 * 21 19 18 35 35 H 1.08005 * 126.49778 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5785 -1.6371 -1.1338 6 6 1.7946 -0.1773 -2.4796 7 7 1.2991 1.0355 -2.5936 8 14 2.1760 -1.1780 -4.0101 9 1 1.0241 -2.0610 -4.3241 10 1 2.4227 -0.2613 -5.1521 11 1 3.3847 -2.0071 -3.7709 12 7 2.0196 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5884 -0.5215 3.5557 15 6 1.7104 -0.9702 4.5020 16 6 2.1671 -1.6560 5.6188 17 6 3.5124 -1.8974 5.7938 18 6 4.4237 -1.4507 4.8428 19 7 5.7938 -1.5310 4.7316 20 1 6.3809 -1.9592 5.3741 21 6 6.2038 -0.9166 3.5797 22 6 5.1424 -0.4286 2.9185 23 6 3.9562 -0.7503 3.7156 24 1 -0.3634 0.5701 0.8550 25 1 -0.3634 0.4555 -0.9212 26 1 -0.3633 -1.0255 0.0661 27 1 1.1322 1.4106 -3.4723 28 1 1.4495 -1.4979 1.4100 29 1 1.0871 0.6163 2.5525 30 1 2.7588 1.0462 2.1182 31 1 0.6527 -0.7889 4.3801 32 1 1.4610 -2.0040 6.3581 33 1 3.8579 -2.4323 6.6660 34 1 7.2294 -0.8362 3.2512 35 1 5.1602 0.1055 1.9799 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134974570.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:05 Heat of formation + Delta-G solvation = 34.592056 kcal Electronic energy + Delta-G solvation = -16887.070129 eV Core-core repulsion = 14270.201763 eV Total energy + Delta-G solvation = -2616.868366 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.01592 -38.52170 -37.22503 -34.69502 -33.00223 -30.94372 -30.02833 -29.13115 -27.19640 -25.68095 -22.81258 -22.62680 -22.13025 -21.14732 -18.78733 -18.06499 -17.03598 -16.69443 -16.20299 -16.06258 -15.48602 -15.22965 -15.04019 -14.46389 -13.95273 -13.85729 -13.65388 -13.45862 -13.24790 -12.81891 -12.79021 -12.54736 -12.32766 -12.30436 -12.17903 -11.94420 -11.48778 -11.04968 -10.46378 -10.44379 -9.05425 -8.93769 -8.48826 -8.09814 -6.17503 0.27360 0.78809 1.43438 1.44195 1.54598 1.93379 2.37749 2.45773 3.00475 3.19150 3.77116 3.91635 4.13328 4.23260 4.35140 4.44852 4.55298 4.66364 4.69311 4.76753 4.86510 4.90044 5.04618 5.06592 5.19442 5.31518 5.40018 5.63607 5.64686 5.76919 5.80601 5.87558 5.99335 6.24389 6.33737 6.68700 6.85584 6.86348 6.96162 7.50551 8.97862 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029046 B = 0.005598 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.751506 B = 5000.589360 C = 5606.218131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.215 3.785 3 H 0.004 0.996 4 C -0.513 4.513 5 H 0.052 0.948 6 C 0.011 3.989 7 N -0.924 5.924 8 Si 0.958 3.042 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.675 5.675 13 C 0.108 3.892 14 C -0.049 4.049 15 C -0.154 4.154 16 C -0.101 4.101 17 C -0.132 4.132 18 C 0.076 3.924 19 N -0.586 5.586 20 H 0.431 0.569 21 C 0.062 3.938 22 C -0.229 4.229 23 C -0.117 4.117 24 H 0.029 0.971 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.261 0.739 28 H 0.329 0.671 29 H 0.028 0.972 30 H 0.051 0.949 31 H 0.126 0.874 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.206 0.794 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.513 -5.561 17.485 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.106 3.894 3 H 0.022 0.978 4 C -0.552 4.552 5 H 0.070 0.930 6 C -0.187 4.187 7 N -0.564 5.564 8 Si 0.783 3.217 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.304 5.304 13 C -0.021 4.021 14 C -0.050 4.050 15 C -0.173 4.173 16 C -0.120 4.120 17 C -0.153 4.153 18 C -0.031 4.031 19 N -0.191 5.191 20 H 0.271 0.729 21 C -0.064 4.064 22 C -0.254 4.254 23 C -0.122 4.122 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.146 0.854 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.144 0.856 32 H 0.172 0.828 33 H 0.167 0.833 34 H 0.223 0.777 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.254 -5.384 17.244 19.467 hybrid contribution -0.721 -0.025 -0.893 1.148 sum 6.533 -5.409 16.350 18.420 Atomic orbital electron populations 1.22189 0.99993 0.99155 0.99563 1.18968 0.89862 0.92993 0.87550 0.97829 1.21376 1.34676 1.08012 0.91144 0.92984 1.25705 0.95526 0.95623 1.01863 1.70083 1.46684 1.15357 1.24324 0.85579 0.78663 0.78595 0.78832 1.19871 1.20976 1.19618 1.60677 1.57803 1.09095 1.02841 1.20697 0.97863 0.94579 0.88984 1.19153 0.92067 0.98513 0.95266 1.20761 0.99384 1.01743 0.95462 1.21069 0.95124 0.98260 0.97575 1.20333 0.91885 1.04053 0.99022 1.18512 0.84812 1.02144 0.97644 1.41704 1.04724 1.50869 1.21802 0.72936 1.22231 1.00179 0.97181 0.86838 1.21828 0.91647 1.10099 1.01853 1.19292 0.93374 1.03128 0.96431 0.95169 0.93726 0.94103 0.92991 0.85412 0.95360 0.93014 0.85619 0.82836 0.83329 0.77708 0.85705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.31 9.04 71.98 0.65 -6.66 16 2 C 0.21 11.39 2.44 44.17 0.11 11.50 16 3 H 0.00 0.22 7.74 -2.39 -0.02 0.20 16 4 C -0.51 -29.67 8.76 25.60 0.22 -29.45 16 5 H 0.05 3.04 7.83 -2.91 -0.02 3.02 16 6 C 0.01 0.63 5.17 84.66 0.44 1.07 16 7 N -0.92 -55.18 12.16 21.45 0.26 -54.91 16 8 Si 0.96 45.12 29.55 68.60 2.03 47.14 16 9 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 N -0.67 -30.86 6.22 -499.47 -3.11 -33.97 16 13 C 0.11 4.34 5.52 85.55 0.47 4.81 16 14 C -0.05 -1.72 5.39 -19.91 -0.11 -1.83 16 15 C -0.15 -4.46 9.60 22.03 0.21 -4.25 16 16 C -0.10 -2.34 10.01 22.30 0.22 -2.12 16 17 C -0.13 -2.98 10.08 22.37 0.23 -2.75 16 18 C 0.08 2.07 7.28 39.03 0.28 2.36 16 19 N -0.59 -12.16 6.07 -187.61 -1.14 -13.30 16 20 H 0.43 5.29 8.96 -92.71 -0.83 4.46 16 21 C 0.06 1.44 11.81 83.00 0.98 2.42 16 22 C -0.23 -7.58 10.94 23.51 0.26 -7.32 16 23 C -0.12 -4.02 6.16 -20.20 -0.12 -4.14 16 24 H 0.03 1.31 7.55 -2.39 -0.02 1.29 16 25 H 0.04 2.40 6.83 -2.39 -0.02 2.38 16 26 H 0.04 1.86 8.07 -2.39 -0.02 1.84 16 27 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 28 H 0.33 14.34 8.42 -89.70 -0.76 13.58 16 29 H 0.03 1.09 7.35 -2.39 -0.02 1.08 16 30 H 0.05 2.24 8.05 -2.39 -0.02 2.22 16 31 H 0.13 3.31 8.02 -2.91 -0.02 3.28 16 32 H 0.15 2.46 8.06 -2.92 -0.02 2.44 16 33 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.21 2.95 8.06 -2.91 -0.02 2.93 16 35 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -69.21 296.89 1.40 -67.81 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -0.48 Total: 23.59 kcal Atomic # 6 Polarization: -40.20 SS G_CDS: 3.84 Total: -36.36 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -3.98 Total: -102.19 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -69.21 1.40 -67.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134974570.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.405 kcal (2) G-P(sol) polarization free energy of solvation -69.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds