Wall clock time and date at job start Mon Mar 30 2020 07:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46904 * 110.99683 * 2 1 4 4 C 1.46896 * 111.00065 * 123.95310 * 2 1 3 5 5 C 1.50702 * 109.47341 * 166.10676 * 4 2 1 6 6 C 1.37923 * 120.15366 * 102.32470 * 5 4 2 7 7 C 1.38626 * 120.25250 * 180.02562 * 6 5 4 8 8 C 1.37905 * 120.62163 * 359.95663 * 7 6 5 9 9 C 1.39084 * 119.97044 * 0.02562 * 8 7 6 10 10 N 1.38151 * 132.80200 * 179.68602 * 9 8 7 11 11 H 0.96993 * 124.69674 * 359.97438 * 10 9 8 12 12 C 1.35643 * 110.61420 * 179.97438 * 10 9 8 13 13 C 1.38897 * 109.29445 * 0.36084 * 12 10 9 14 14 C 1.40885 * 126.93408 * 179.78782 * 13 12 10 15 15 H 1.08001 * 120.00328 * 197.52100 * 14 13 12 16 16 C 1.39735 * 120.00135 * 17.51825 * 14 13 12 17 17 N 1.31055 * 119.99938 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00371 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47000 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47419 * 120.00127 * 18 16 14 21 21 H 1.48504 * 109.47356 * 239.99903 * 18 16 14 22 22 C 1.39145 * 120.15094 * 282.32879 * 5 4 2 23 23 H 1.08998 * 109.47212 * 296.04563 * 1 2 3 24 24 H 1.09006 * 109.46942 * 56.04556 * 1 2 3 25 25 H 1.09001 * 109.47009 * 176.03861 * 1 2 3 26 26 H 1.08998 * 109.46818 * 184.20200 * 3 2 1 27 27 H 1.08999 * 109.47160 * 304.20542 * 3 2 1 28 28 H 1.08998 * 109.47190 * 64.20570 * 3 2 1 29 29 H 1.09006 * 109.47201 * 46.10611 * 4 2 1 30 30 H 1.09001 * 109.47190 * 286.10804 * 4 2 1 31 31 H 1.07995 * 119.86968 * 0.02562 * 6 5 4 32 32 H 1.07995 * 119.68989 * 179.97438 * 7 6 5 33 33 H 1.08002 * 120.01793 * 180.02562 * 8 7 6 34 34 H 1.08007 * 125.35485 * 180.16052 * 12 10 9 35 35 H 0.96998 * 120.00499 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4631 -1.0348 0.9261 6 6 4.4081 -0.2890 1.5991 7 6 5.7588 -0.5342 1.4057 8 6 6.1762 -1.5244 0.5414 9 6 5.2382 -2.2874 -0.1461 10 7 5.3536 -3.3182 -1.0586 11 1 6.1944 -3.6847 -1.3742 12 6 4.1284 -3.7468 -1.4524 13 6 3.1515 -2.9972 -0.8097 14 6 1.7557 -3.1274 -0.9499 15 1 1.1040 -2.3270 -0.6319 16 6 1.2144 -4.2921 -1.5004 17 7 2.0051 -5.2635 -1.8859 18 14 -0.6362 -4.4644 -1.6869 19 1 -1.3013 -3.2374 -1.1795 20 1 -0.9738 -4.6543 -3.1205 21 1 -1.1050 -5.6389 -0.9084 22 6 3.8711 -2.0366 0.0508 23 1 -0.3633 0.4512 0.9233 24 1 -0.3633 0.5740 -0.8525 25 1 -0.3633 -1.0252 -0.0710 26 1 3.0824 1.3434 -0.0753 27 1 1.5862 1.9177 -0.8499 28 1 1.7081 1.8709 0.9253 29 1 1.4605 -1.7123 1.2171 30 1 1.8595 -0.1935 2.0551 31 1 4.0946 0.4890 2.2793 32 1 6.4910 0.0556 1.9370 33 1 7.2309 -1.7074 0.3984 34 1 3.9418 -4.5435 -2.1574 35 1 1.6294 -6.0719 -2.2683 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149845594.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:12 Heat of formation + Delta-G solvation = 57.520370 kcal Electronic energy + Delta-G solvation = -17731.795050 eV Core-core repulsion = 15115.920931 eV Total energy + Delta-G solvation = -2615.874120 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.69300 -37.07028 -35.35983 -33.32876 -31.09966 -28.82346 -27.73058 -27.07359 -26.02780 -24.39671 -21.82376 -20.62822 -20.36818 -19.18954 -16.71476 -15.72315 -15.26859 -14.81658 -14.76741 -14.30336 -14.22862 -13.80014 -13.07217 -12.90426 -12.44067 -12.14985 -11.87063 -11.51355 -11.36365 -11.20905 -11.16450 -11.03713 -10.83545 -10.63855 -10.32971 -10.23906 -9.55663 -9.52165 -9.09231 -8.17098 -7.67871 -6.94918 -6.43452 -6.37117 -3.83598 2.22718 2.69946 3.14062 3.23720 3.27300 4.17795 4.32713 4.54602 4.63939 5.02632 5.57196 5.63442 5.72013 5.74300 5.76582 5.87676 5.99270 6.03920 6.06431 6.30782 6.35892 6.39418 6.47732 6.61732 6.82021 6.92740 7.28981 7.32970 7.49357 7.52000 7.60828 7.72088 7.85188 7.92794 8.21319 8.49272 8.83824 9.14966 9.28461 9.35237 10.64718 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.018720 B = 0.011082 C = 0.007355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.393764 B = 2525.929160 C = 3806.163616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.524 5.524 3 C 0.028 3.972 4 C 0.101 3.899 5 C -0.019 4.019 6 C -0.187 4.187 7 C -0.117 4.117 8 C -0.155 4.155 9 C 0.082 3.918 10 N -0.593 5.593 11 H 0.392 0.608 12 C -0.091 4.091 13 C 0.031 3.969 14 C -0.411 4.411 15 H 0.089 0.911 16 C 0.053 3.947 17 N -0.839 5.839 18 Si 0.906 3.094 19 H -0.264 1.264 20 H -0.280 1.280 21 H -0.281 1.281 22 C -0.101 4.101 23 H 0.014 0.986 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.014 0.986 29 H 0.092 0.908 30 H 0.024 0.976 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.178 0.822 35 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.836 6.796 3.308 7.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.247 5.247 3 C -0.121 4.121 4 C -0.026 4.026 5 C -0.020 4.020 6 C -0.209 4.209 7 C -0.137 4.137 8 C -0.177 4.177 9 C -0.029 4.029 10 N -0.194 5.194 11 H 0.225 0.775 12 C -0.215 4.215 13 C 0.026 3.974 14 C -0.444 4.444 15 H 0.107 0.893 16 C -0.156 4.156 17 N -0.471 5.471 18 Si 0.733 3.267 19 H -0.189 1.189 20 H -0.206 1.206 21 H -0.207 1.207 22 C -0.108 4.108 23 H 0.033 0.967 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.033 0.967 29 H 0.110 0.890 30 H 0.043 0.957 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.194 0.806 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.935 6.229 2.671 6.842 hybrid contribution -0.604 -0.012 0.446 0.751 sum 0.331 6.217 3.117 6.963 Atomic orbital electron populations 1.22395 0.87996 1.02611 0.99174 1.61829 1.06761 1.12645 1.43467 1.22367 1.01540 0.89151 0.98998 1.21011 0.93413 0.98435 0.89713 1.18949 0.93407 0.94194 0.95449 1.20366 0.92783 1.02730 1.04975 1.20310 0.95191 0.98488 0.99665 1.19759 0.96426 0.99679 1.01851 1.18242 0.95161 0.93326 0.96202 1.41481 1.08230 1.30947 1.38712 0.77514 1.22847 0.80731 1.08586 1.09292 1.18004 0.92803 0.92659 0.93957 1.19048 0.91075 1.00542 1.33749 0.89292 1.25675 0.99281 0.95497 0.95173 1.69656 1.35733 1.05883 1.35781 0.86277 0.83681 0.78559 0.78149 1.18852 1.20602 1.20746 1.19256 0.92182 0.99246 1.00161 0.96742 0.91965 0.90784 0.91064 0.92272 0.96748 0.89014 0.95747 0.88251 0.87829 0.88400 0.80555 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.22 60.07 0.55 0.99 16 2 N -0.52 -9.88 4.27 -252.72 -1.08 -10.96 16 3 C 0.03 0.45 9.36 60.07 0.56 1.01 16 4 C 0.10 1.98 4.24 -4.98 -0.02 1.96 16 5 C -0.02 -0.41 4.67 -104.40 -0.49 -0.90 16 6 C -0.19 -3.57 8.99 -39.55 -0.36 -3.93 16 7 C -0.12 -2.15 10.01 -39.56 -0.40 -2.55 16 8 C -0.16 -3.05 10.07 -39.39 -0.40 -3.44 16 9 C 0.08 1.86 7.23 -83.90 -0.61 1.26 16 10 N -0.59 -13.17 5.99 -9.81 -0.06 -13.23 16 11 H 0.39 7.19 8.96 -40.82 -0.37 6.82 16 12 C -0.09 -2.33 10.80 -15.62 -0.17 -2.50 16 13 C 0.03 0.83 6.02 -104.80 -0.63 0.20 16 14 C -0.41 -10.92 8.56 -38.02 -0.33 -11.24 16 15 H 0.09 2.26 3.88 -52.49 -0.20 2.05 16 16 C 0.05 1.36 5.48 -17.32 -0.09 1.27 16 17 N -0.84 -22.21 10.64 55.54 0.59 -21.62 16 18 Si 0.91 19.69 29.56 -169.99 -5.02 14.67 16 19 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 22 C -0.10 -2.48 6.16 -104.90 -0.65 -3.12 16 23 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 24 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 25 H 0.07 1.31 7.01 -51.93 -0.36 0.95 16 26 H 0.07 1.23 6.91 -51.93 -0.36 0.87 16 27 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 28 H 0.01 0.21 8.12 -51.93 -0.42 -0.22 16 29 H 0.09 1.95 6.53 -51.93 -0.34 1.61 16 30 H 0.02 0.43 7.90 -51.93 -0.41 0.02 16 31 H 0.10 1.65 8.02 -52.49 -0.42 1.23 16 32 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.18 4.67 6.14 -52.48 -0.32 4.35 16 35 H 0.27 6.62 8.30 -40.82 -0.34 6.28 16 LS Contribution 284.85 15.07 4.29 4.29 Total: -1.00 -28.53 284.85 -8.75 -37.27 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -4.45 Total: 10.57 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -3.01 Total: -20.99 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.55 Total: -45.80 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.53 -8.75 -37.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149845594.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.792 kcal (2) G-P(sol) polarization free energy of solvation -28.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds