Wall clock time and date at job start Mon Mar 30 2020 06:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47501 * 2 1 4 4 C 1.53003 * 109.46776 * 239.99862 * 2 1 3 5 5 C 1.50702 * 109.47094 * 120.00473 * 2 1 3 6 6 N 1.35766 * 125.37007 * 354.38087 * 5 2 1 7 7 H 0.96998 * 124.62150 * 359.97438 * 6 5 2 8 8 C 1.37880 * 110.74412 * 179.97438 * 6 5 2 9 9 N 1.32700 * 132.55351 * 180.02562 * 8 6 5 10 10 C 1.31640 * 121.74020 * 180.02562 * 9 8 6 11 11 C 1.38512 * 121.53123 * 359.97438 * 10 9 8 12 12 C 1.38458 * 119.28321 * 0.27331 * 11 10 9 13 13 C 1.39260 * 118.07228 * 359.46878 * 12 11 10 14 14 C 1.38888 * 125.37277 * 174.33480 * 5 2 1 15 15 C 1.40893 * 126.98476 * 0.03830 * 14 5 2 16 16 H 1.07998 * 119.99789 * 34.06145 * 15 14 5 17 17 C 1.39772 * 119.99853 * 214.05551 * 15 14 5 18 18 N 1.31033 * 119.99960 * 12.01689 * 17 15 14 19 19 Si 1.86804 * 119.99882 * 192.02041 * 17 15 14 20 20 H 1.48502 * 109.46913 * 90.00003 * 19 17 15 21 21 H 1.48490 * 109.47056 * 210.00223 * 19 17 15 22 22 H 1.48504 * 109.46748 * 330.00269 * 19 17 15 23 23 H 1.08997 * 109.47190 * 300.00054 * 1 2 3 24 24 H 1.08999 * 109.47424 * 59.99968 * 1 2 3 25 25 H 1.09000 * 109.47891 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47052 * 185.46701 * 3 2 1 27 27 H 1.08992 * 109.46787 * 305.46534 * 3 2 1 28 28 H 1.09000 * 109.46637 * 65.46313 * 3 2 1 29 29 H 1.08997 * 109.47357 * 299.99975 * 4 2 1 30 30 H 1.09003 * 109.47228 * 60.00377 * 4 2 1 31 31 H 1.09005 * 109.46777 * 180.02562 * 4 2 1 32 32 H 1.08004 * 119.23801 * 179.97438 * 10 9 8 33 33 H 1.07997 * 120.36540 * 180.02562 * 11 10 9 34 34 H 1.07995 * 120.96517 * 179.70412 * 12 11 10 35 35 H 0.97002 * 119.99596 * 184.93900 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2304 6 7 1.2555 -1.1708 2.2443 7 1 0.2897 -1.0879 2.2800 8 6 2.0268 -1.7721 3.2162 9 7 1.7236 -2.3568 4.3682 10 6 2.6504 -2.8714 5.1487 11 6 3.9917 -2.8288 4.8057 12 6 4.3681 -2.2263 3.6172 13 6 3.3682 -1.6946 2.8067 14 6 3.3628 -0.9985 1.5056 15 6 4.4802 -0.6886 0.7054 16 1 4.4907 0.2196 0.1211 17 6 5.5752 -1.5565 0.6679 18 7 5.4761 -2.7587 1.1796 19 14 7.1798 -1.0025 -0.1118 20 1 8.0368 -0.3644 0.9195 21 1 7.8845 -2.1783 -0.6827 22 1 6.8935 -0.0244 -1.1919 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3635 -1.0276 0.0005 26 1 3.1256 1.4439 -0.0979 27 1 1.5990 1.9837 -0.8370 28 1 1.7588 1.9272 0.9349 29 1 1.6765 -1.7489 -1.2493 30 1 1.6765 -0.2074 -2.1393 31 1 3.1299 -0.7217 -1.2490 32 1 2.3582 -3.3376 6.0781 33 1 4.7364 -3.2573 5.4601 34 1 5.4065 -2.1737 3.3254 35 1 6.2554 -3.3350 1.2183 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000198954343.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:34 Heat of formation + Delta-G solvation = 46.345137 kcal Electronic energy + Delta-G solvation = -17902.790290 eV Core-core repulsion = 15286.431576 eV Total energy + Delta-G solvation = -2616.358714 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.12457 -37.29881 -34.77749 -33.73368 -31.14215 -29.36392 -27.88029 -26.53935 -26.37322 -24.92852 -22.55139 -21.25124 -19.91589 -18.25671 -16.94096 -16.26314 -15.15022 -14.80082 -14.62366 -13.91164 -13.84884 -13.31838 -13.21973 -12.61087 -12.42879 -11.94594 -11.78872 -11.71475 -11.31665 -11.14421 -11.04524 -11.01364 -10.87141 -10.68710 -10.19280 -10.15077 -10.09352 -9.66609 -8.98660 -8.82207 -8.21661 -7.14757 -6.75061 -6.33716 -4.08118 2.31468 2.59037 3.08132 3.17592 3.19370 4.01007 4.06742 4.13271 5.02828 5.38634 5.47401 5.57423 5.62695 5.67202 6.01502 6.07749 6.14320 6.26153 6.30861 6.32701 6.39648 6.46042 6.49792 6.66914 6.69601 6.90411 6.97501 7.02773 7.18033 7.31491 7.34830 7.53796 7.74808 8.03278 8.23294 8.57238 8.62727 9.00998 9.09209 9.26424 10.48033 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.014929 B = 0.013804 C = 0.007710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.034422 B = 2027.865531 C = 3630.588757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.035 3.965 3 C -0.136 4.136 4 C -0.137 4.137 5 C -0.090 4.090 6 N -0.571 5.571 7 H 0.394 0.606 8 C 0.268 3.732 9 N -0.531 5.531 10 C 0.115 3.885 11 C -0.257 4.257 12 C 0.025 3.975 13 C -0.136 4.136 14 C 0.084 3.916 15 C -0.450 4.450 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.818 5.818 19 Si 0.896 3.104 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.265 1.265 23 H 0.046 0.954 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.036 0.964 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.113 0.887 34 H 0.128 0.872 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.002 2.957 -0.446 4.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.034 3.966 3 C -0.194 4.194 4 C -0.194 4.194 5 C -0.193 4.193 6 N -0.177 5.177 7 H 0.229 0.771 8 C 0.034 3.966 9 N -0.246 5.246 10 C -0.050 4.050 11 C -0.280 4.280 12 C -0.001 4.001 13 C -0.145 4.145 14 C 0.078 3.922 15 C -0.483 4.483 16 H 0.097 0.903 17 C -0.137 4.137 18 N -0.447 5.447 19 Si 0.721 3.279 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.189 1.189 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.102 0.898 32 H 0.154 0.846 33 H 0.131 0.869 34 H 0.146 0.854 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.892 2.773 -0.383 4.794 hybrid contribution 1.206 0.023 -0.376 1.263 sum -2.686 2.796 -0.759 3.951 Atomic orbital electron populations 1.21909 0.96480 1.01048 1.00848 1.18531 0.92673 0.93766 0.91609 1.21902 1.02477 0.95089 0.99896 1.21848 1.04116 0.98935 0.94537 1.20124 0.89680 1.16585 0.92948 1.40713 1.07422 1.52198 1.17355 0.77150 1.18405 0.89558 0.98624 0.89998 1.66286 1.38862 1.14811 1.04662 1.21881 0.88896 0.97164 0.97041 1.21578 0.96880 1.09223 1.00337 1.21025 0.99613 0.89501 0.90001 1.19938 0.91760 1.05550 0.97272 1.17652 0.90305 0.94063 0.90197 1.18587 0.99163 1.05859 1.24691 0.90322 1.25655 0.99509 0.93819 0.94711 1.69939 1.30324 1.05974 1.38503 0.86510 0.82395 0.78904 0.80043 1.19804 1.20754 1.18900 0.93441 0.92886 0.93085 0.91283 0.93947 0.93613 0.93625 0.94465 0.89827 0.84580 0.86918 0.85445 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 7.51 37.15 0.28 -1.97 16 2 C 0.04 0.65 0.80 -155.66 -0.12 0.53 16 3 C -0.14 -2.35 8.33 37.16 0.31 -2.04 16 4 C -0.14 -2.54 8.27 37.16 0.31 -2.23 16 5 C -0.09 -2.00 5.65 -80.61 -0.46 -2.46 16 6 N -0.57 -12.49 5.75 -7.60 -0.04 -12.53 16 7 H 0.39 7.50 7.78 -40.82 -0.32 7.18 16 8 C 0.27 6.51 8.39 -155.34 -1.30 5.20 16 9 N -0.53 -12.16 10.39 -12.26 -0.13 -12.28 16 10 C 0.12 2.36 11.14 -17.53 -0.20 2.16 16 11 C -0.26 -5.32 10.11 -39.40 -0.40 -5.72 16 12 C 0.02 0.59 8.83 -39.12 -0.35 0.24 16 13 C -0.14 -3.48 5.76 -104.88 -0.60 -4.08 16 14 C 0.08 2.13 5.54 -104.85 -0.58 1.55 16 15 C -0.45 -11.21 6.97 -38.00 -0.26 -11.47 16 16 H 0.08 1.88 5.62 -52.49 -0.29 1.59 16 17 C 0.08 1.87 5.15 -17.32 -0.09 1.78 16 18 N -0.82 -20.92 10.04 55.54 0.56 -20.36 16 19 Si 0.90 18.61 29.58 -169.99 -5.03 13.58 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 23 H 0.05 0.70 7.83 -51.93 -0.41 0.29 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 1.28 5.98 -51.93 -0.31 0.97 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.73 5.85 -51.93 -0.30 1.43 16 32 H 0.14 2.23 8.06 -52.48 -0.42 1.81 16 33 H 0.11 1.96 8.06 -52.49 -0.42 1.54 16 34 H 0.13 3.08 6.48 -52.49 -0.34 2.74 16 35 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 LS Contribution 282.33 15.07 4.25 4.25 Total: -1.00 -27.69 282.33 -8.34 -36.03 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -4.49 Total: 9.82 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -3.46 Total: -18.52 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.39 Total: -45.17 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.69 -8.34 -36.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198954343.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.374 kcal (2) G-P(sol) polarization free energy of solvation -27.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds