Wall clock time and date at job start Mon Mar 30 2020 06:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47501 * 2 1 4 4 C 1.53003 * 109.46776 * 239.99862 * 2 1 3 5 5 C 1.50702 * 109.47094 * 120.00473 * 2 1 3 6 6 N 1.35766 * 125.37007 * 354.38087 * 5 2 1 7 7 H 0.96998 * 124.62150 * 359.97438 * 6 5 2 8 8 C 1.37880 * 110.74412 * 179.97438 * 6 5 2 9 9 N 1.32700 * 132.55351 * 180.02562 * 8 6 5 10 10 C 1.31640 * 121.74020 * 180.02562 * 9 8 6 11 11 C 1.38512 * 121.53123 * 359.97438 * 10 9 8 12 12 C 1.38458 * 119.28321 * 0.27331 * 11 10 9 13 13 C 1.39260 * 118.07228 * 359.46878 * 12 11 10 14 14 C 1.38888 * 125.37277 * 174.33480 * 5 2 1 15 15 C 1.40893 * 126.98476 * 0.03830 * 14 5 2 16 16 H 1.07998 * 119.99789 * 34.06145 * 15 14 5 17 17 C 1.39772 * 119.99853 * 214.05551 * 15 14 5 18 18 N 1.31033 * 119.99960 * 12.01689 * 17 15 14 19 19 Si 1.86804 * 119.99882 * 192.02041 * 17 15 14 20 20 H 1.48502 * 109.46913 * 90.00003 * 19 17 15 21 21 H 1.48490 * 109.47056 * 210.00223 * 19 17 15 22 22 H 1.48504 * 109.46748 * 330.00269 * 19 17 15 23 23 H 1.08997 * 109.47190 * 300.00054 * 1 2 3 24 24 H 1.08999 * 109.47424 * 59.99968 * 1 2 3 25 25 H 1.09000 * 109.47891 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47052 * 185.46701 * 3 2 1 27 27 H 1.08992 * 109.46787 * 305.46534 * 3 2 1 28 28 H 1.09000 * 109.46637 * 65.46313 * 3 2 1 29 29 H 1.08997 * 109.47357 * 299.99975 * 4 2 1 30 30 H 1.09003 * 109.47228 * 60.00377 * 4 2 1 31 31 H 1.09005 * 109.46777 * 180.02562 * 4 2 1 32 32 H 1.08004 * 119.23801 * 179.97438 * 10 9 8 33 33 H 1.07997 * 120.36540 * 180.02562 * 11 10 9 34 34 H 1.07995 * 120.96517 * 179.70412 * 12 11 10 35 35 H 0.97002 * 119.99596 * 184.93900 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2304 6 7 1.2555 -1.1708 2.2443 7 1 0.2897 -1.0879 2.2800 8 6 2.0268 -1.7721 3.2162 9 7 1.7236 -2.3568 4.3682 10 6 2.6504 -2.8714 5.1487 11 6 3.9917 -2.8288 4.8057 12 6 4.3681 -2.2263 3.6172 13 6 3.3682 -1.6946 2.8067 14 6 3.3628 -0.9985 1.5056 15 6 4.4802 -0.6886 0.7054 16 1 4.4907 0.2196 0.1211 17 6 5.5752 -1.5565 0.6679 18 7 5.4761 -2.7587 1.1796 19 14 7.1798 -1.0025 -0.1118 20 1 8.0368 -0.3644 0.9195 21 1 7.8845 -2.1783 -0.6827 22 1 6.8935 -0.0244 -1.1919 23 1 -0.3633 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3635 -1.0276 0.0005 26 1 3.1256 1.4439 -0.0979 27 1 1.5990 1.9837 -0.8370 28 1 1.7588 1.9272 0.9349 29 1 1.6765 -1.7489 -1.2493 30 1 1.6765 -0.2074 -2.1393 31 1 3.1299 -0.7217 -1.2490 32 1 2.3582 -3.3376 6.0781 33 1 4.7364 -3.2573 5.4601 34 1 5.4065 -2.1737 3.3254 35 1 6.2554 -3.3350 1.2183 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000198954343.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:34 Heat of formation + Delta-G solvation = 31.918826 kcal Electronic energy + Delta-G solvation = -17903.415862 eV Core-core repulsion = 15286.431576 eV Total energy + Delta-G solvation = -2616.984286 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.85766 -38.93088 -36.33158 -35.52498 -32.90764 -31.11331 -29.58933 -27.91094 -27.79165 -26.73701 -24.24228 -22.96275 -21.65719 -19.89121 -18.65787 -18.07016 -16.77583 -16.49602 -16.33458 -15.57350 -15.44067 -14.82414 -14.69537 -14.32467 -14.03180 -13.69797 -13.28394 -13.06893 -12.94670 -12.81837 -12.62953 -12.52972 -12.44632 -12.30230 -11.80433 -11.66661 -11.61331 -11.29907 -10.74690 -10.62614 -9.97384 -8.88368 -8.56340 -8.12688 -5.92641 0.56037 0.85110 1.41423 1.46119 1.55046 2.24690 2.34058 2.41678 3.24886 3.58310 3.99867 4.09132 4.17406 4.29479 4.39044 4.61587 4.65503 4.76304 4.82132 4.88222 4.92084 5.01346 5.10303 5.17392 5.26832 5.29445 5.35966 5.45995 5.54023 5.66674 5.76627 5.77789 6.00014 6.28798 6.42055 6.79000 6.88029 7.22436 7.25156 7.54162 8.69341 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.014929 B = 0.013804 C = 0.007710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.034422 B = 2027.865531 C = 3630.588757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.028 3.972 3 C -0.130 4.130 4 C -0.131 4.131 5 C -0.072 4.072 6 N -0.563 5.563 7 H 0.407 0.593 8 C 0.241 3.759 9 N -0.538 5.538 10 C 0.115 3.885 11 C -0.247 4.247 12 C 0.001 3.999 13 C -0.172 4.172 14 C 0.035 3.965 15 C -0.464 4.464 16 H 0.079 0.921 17 C 0.036 3.964 18 N -0.853 5.853 19 Si 0.958 3.042 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.259 1.259 23 H 0.054 0.946 24 H 0.081 0.919 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.031 0.969 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.184 0.816 33 H 0.148 0.852 34 H 0.114 0.886 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.055 3.562 -0.447 5.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.027 3.973 3 C -0.188 4.188 4 C -0.189 4.189 5 C -0.177 4.177 6 N -0.170 5.170 7 H 0.244 0.756 8 C 0.007 3.993 9 N -0.254 5.254 10 C -0.050 4.050 11 C -0.270 4.270 12 C -0.026 4.026 13 C -0.181 4.181 14 C 0.029 3.971 15 C -0.497 4.497 16 H 0.096 0.904 17 C -0.174 4.174 18 N -0.484 5.484 19 Si 0.782 3.218 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.182 1.182 23 H 0.073 0.927 24 H 0.100 0.900 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.061 0.939 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.201 0.799 33 H 0.166 0.834 34 H 0.132 0.868 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.971 3.389 -0.381 6.029 hybrid contribution 1.433 -0.184 -0.299 1.475 sum -3.538 3.205 -0.680 4.822 Atomic orbital electron populations 1.21855 0.93660 1.01475 1.02669 1.18748 0.95000 0.93968 0.89558 1.21825 1.01341 0.94424 1.01168 1.21777 1.02348 0.98664 0.96103 1.20807 0.89238 1.14129 0.93492 1.40743 1.08054 1.51461 1.16781 0.75578 1.18670 0.89618 0.99921 0.91049 1.66411 1.39629 1.14954 1.04377 1.22683 0.88477 0.95905 0.97939 1.21966 0.98156 1.07520 0.99337 1.21131 0.98954 0.91013 0.91467 1.20295 0.92961 1.06778 0.98045 1.18042 0.91754 0.96287 0.91015 1.18727 0.99957 1.05984 1.25077 0.90352 1.26313 1.02171 0.93717 0.95194 1.70031 1.30943 1.06971 1.40439 0.85552 0.78712 0.78343 0.79210 1.19689 1.20787 1.18247 0.92711 0.90028 0.93388 0.93312 0.90598 0.93903 0.95018 0.91037 0.92533 0.79928 0.83405 0.86803 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.90 7.51 71.98 0.54 -3.36 16 2 C 0.03 1.01 0.80 -52.93 -0.04 0.97 16 3 C -0.13 -4.27 8.33 71.98 0.60 -3.67 16 4 C -0.13 -4.75 8.27 71.98 0.59 -4.15 16 5 C -0.07 -3.21 5.65 42.11 0.24 -2.97 16 6 N -0.56 -24.53 5.75 -177.95 -1.02 -25.55 16 7 H 0.41 15.10 7.78 -92.71 -0.72 14.37 16 8 C 0.24 11.73 8.39 133.68 1.12 12.85 16 9 N -0.54 -24.06 10.39 -192.70 -2.00 -26.06 16 10 C 0.12 4.46 11.14 84.79 0.94 5.41 16 11 C -0.25 -9.95 10.11 22.39 0.23 -9.72 16 12 C 0.00 0.03 8.83 22.57 0.20 0.23 16 13 C -0.17 -9.00 5.76 -20.03 -0.12 -9.12 16 14 C 0.04 1.84 5.54 -20.01 -0.11 1.73 16 15 C -0.46 -23.91 6.97 23.29 0.16 -23.75 16 16 H 0.08 3.88 5.62 -2.91 -0.02 3.86 16 17 C 0.04 1.80 5.15 85.18 0.44 2.24 16 18 N -0.85 -45.32 10.04 21.81 0.22 -45.10 16 19 Si 0.96 39.26 29.58 68.60 2.03 41.29 16 20 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 21 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 22 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 23 H 0.05 1.45 7.83 -2.39 -0.02 1.43 16 24 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.05 1.79 5.98 -2.39 -0.01 1.78 16 27 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 31 H 0.06 2.36 5.85 -2.38 -0.01 2.34 16 32 H 0.18 5.24 8.06 -2.91 -0.02 5.22 16 33 H 0.15 4.78 8.06 -2.91 -0.02 4.75 16 34 H 0.11 5.75 6.48 -2.91 -0.02 5.73 16 35 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -61.62 282.33 4.41 -57.21 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.38 Total: 31.55 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: 4.80 Total: -33.33 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -2.81 Total: -96.72 kcal Atomic # 14 Polarization: 39.26 SS G_CDS: 2.03 Total: 41.29 kcal Total: -61.62 4.41 -57.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000198954343.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.132 kcal (2) G-P(sol) polarization free energy of solvation -61.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds