Wall clock time and date at job start Mon Mar 30 2020 06:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.36398 * 120.07453 * 59.99785 * 4 2 1 6 6 C 1.38996 * 120.76061 * 180.02562 * 5 4 2 7 7 C 1.38007 * 120.57354 * 0.02562 * 6 5 4 8 8 C 1.38680 * 119.76351 * 359.97438 * 7 6 5 9 9 C 1.40502 * 120.07774 * 239.72700 * 4 2 1 10 10 N 1.33972 * 133.19774 * 359.97438 * 9 4 2 11 11 C 1.32462 * 109.78313 * 179.97438 * 10 9 4 12 12 C 1.40186 * 125.30421 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00660 * 179.97438 * 12 11 10 14 14 C 1.40357 * 119.99681 * 359.97438 * 12 11 10 15 15 N 1.30587 * 119.99948 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99596 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47732 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47100 * 120.00219 * 16 14 12 19 19 H 1.48505 * 109.46953 * 239.99338 * 16 14 12 20 20 N 1.37863 * 109.39642 * 359.44710 * 11 10 9 21 21 C 1.46502 * 126.53740 * 179.97438 * 20 11 10 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.08003 * 119.61771 * 359.97438 * 5 4 2 30 30 H 1.07995 * 119.71331 * 180.02562 * 6 5 4 31 31 H 1.07997 * 120.12106 * 179.97438 * 7 6 5 32 32 H 0.96998 * 119.99793 * 180.02562 * 15 14 12 33 33 H 1.09007 * 109.46993 * 270.81447 * 21 20 11 34 34 H 1.08993 * 109.47029 * 30.81261 * 21 20 11 35 35 H 1.08996 * 109.47023 * 150.81558 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.7038 -0.2459 -2.4700 6 6 2.1589 -0.8903 -3.6143 7 6 2.9529 -2.0150 -3.5179 8 6 3.3009 -2.5069 -2.2688 9 6 2.8450 -1.8496 -1.1032 10 7 3.3266 -2.5193 -0.0476 11 6 4.0555 -3.5449 -0.4619 12 6 4.7115 -4.4616 0.3714 13 1 5.2845 -5.2692 -0.0596 14 6 4.6236 -4.3299 1.7661 15 7 3.9311 -3.3531 2.2873 16 14 5.4983 -5.5511 2.8764 17 1 6.2094 -6.5551 2.0449 18 1 6.4777 -4.8311 3.7294 19 1 4.5027 -6.2381 3.7379 20 7 4.0578 -3.5779 -1.8401 21 6 4.7456 -4.5548 -2.6880 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.0822 0.6324 -2.5634 30 1 1.8888 -0.5077 -4.5874 31 1 3.3021 -2.5102 -4.4118 32 1 3.8707 -3.2619 3.2510 33 1 5.7561 -4.2047 -2.8993 34 1 4.7938 -5.5136 -2.1720 35 1 4.1988 -4.6727 -3.6235 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213509913.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:57 Heat of formation + Delta-G solvation = 48.134184 kcal Electronic energy + Delta-G solvation = -17497.280902 eV Core-core repulsion = 14880.999767 eV Total energy + Delta-G solvation = -2616.281135 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 2.56 seconds Orbital eigenvalues (eV) -40.36808 -36.94545 -34.26851 -33.39270 -32.44627 -28.92267 -28.25670 -26.50887 -25.89217 -25.71957 -22.03154 -20.75895 -20.41097 -18.29809 -16.94917 -16.12695 -15.60560 -14.83495 -14.40545 -14.16839 -13.90305 -13.40671 -12.78471 -12.68650 -12.51622 -12.14293 -12.01891 -11.67262 -11.62064 -11.38059 -11.22176 -11.08170 -10.68261 -10.63634 -10.30201 -10.27926 -9.88585 -9.81005 -9.31026 -8.84989 -7.87716 -7.20694 -6.73603 -6.67127 -4.60409 2.25239 2.72993 2.98773 3.02360 3.06538 3.80059 4.14382 4.15915 4.94180 5.47201 5.50850 5.57475 5.64682 5.82266 5.94786 5.96021 5.96998 6.06309 6.13524 6.17460 6.28569 6.37352 6.51593 6.57794 6.59277 6.75232 6.86475 6.93627 7.00353 7.08963 7.36261 7.50236 7.65926 7.77823 7.95097 8.01811 8.34672 8.64976 9.04078 9.96526 10.22197 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022402 B = 0.008540 C = 0.006456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.572827 B = 3277.784912 C = 4336.281381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.047 4.047 3 C -0.135 4.135 4 C -0.084 4.084 5 C -0.120 4.120 6 C -0.179 4.179 7 C -0.108 4.108 8 C -0.006 4.006 9 C 0.114 3.886 10 N -0.531 5.531 11 C 0.417 3.583 12 C -0.442 4.442 13 H 0.086 0.914 14 C 0.077 3.923 15 N -0.715 5.715 16 Si 0.917 3.083 17 H -0.261 1.261 18 H -0.271 1.271 19 H -0.272 1.272 20 N -0.545 5.545 21 C 0.105 3.895 22 H 0.051 0.949 23 H 0.047 0.953 24 H 0.045 0.955 25 H 0.089 0.911 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.047 0.953 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.278 0.722 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.135 1.424 -3.996 4.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.066 4.066 3 C -0.192 4.192 4 C -0.087 4.087 5 C -0.141 4.141 6 C -0.200 4.200 7 C -0.129 4.129 8 C -0.114 4.114 9 C -0.014 4.014 10 N -0.254 5.254 11 C 0.180 3.820 12 C -0.479 4.479 13 H 0.105 0.895 14 C -0.150 4.150 15 N -0.337 5.337 16 Si 0.741 3.259 17 H -0.185 1.185 18 H -0.197 1.197 19 H -0.197 1.197 20 N -0.242 5.242 21 C -0.039 4.039 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.107 0.893 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.281 1.620 -3.022 3.660 hybrid contribution 0.641 -0.874 -0.573 1.226 sum -0.640 0.746 -3.595 3.727 Atomic orbital electron populations 1.21797 0.95894 1.01259 1.00259 1.19864 0.94304 0.94808 0.97618 1.21797 1.01047 0.96112 1.00253 1.18490 1.00778 0.95499 0.93953 1.20038 1.02178 1.00064 0.91821 1.20256 1.04279 0.98349 0.97076 1.19570 1.02165 0.98161 0.93046 1.18887 1.02568 0.93789 0.96120 1.19372 0.97151 0.95251 0.89622 1.71333 1.20468 1.09274 1.24328 1.20471 0.91706 0.92613 0.77182 1.18522 1.28947 1.10232 0.90226 0.89544 1.25848 0.94753 0.95970 0.98412 1.69979 1.26363 1.24383 1.13013 0.86120 0.79569 0.80376 0.79858 1.18466 1.19658 1.19668 1.45439 1.46511 1.24921 1.07304 1.21412 0.96031 0.92372 0.94131 0.93018 0.93390 0.93569 0.89282 0.93571 0.93011 0.93394 0.87901 0.87927 0.88771 0.91071 0.93285 0.90713 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.31 9.00 37.16 0.33 -1.98 16 2 C -0.05 -0.95 3.10 -91.77 -0.28 -1.24 16 3 C -0.13 -2.31 9.00 37.16 0.33 -1.98 16 4 C -0.08 -1.89 4.81 -104.43 -0.50 -2.39 16 5 C -0.12 -2.40 8.64 -39.96 -0.35 -2.75 16 6 C -0.18 -3.48 10.04 -39.39 -0.40 -3.88 16 7 C -0.11 -2.27 10.04 -39.50 -0.40 -2.66 16 8 C -0.01 -0.15 6.88 -83.75 -0.58 -0.72 16 9 C 0.11 2.97 6.89 -84.89 -0.58 2.38 16 10 N -0.53 -15.11 9.06 -10.31 -0.09 -15.21 16 11 C 0.42 11.34 7.41 -155.67 -1.15 10.18 16 12 C -0.44 -11.35 8.99 -38.05 -0.34 -11.70 16 13 H 0.09 2.02 7.11 -52.49 -0.37 1.65 16 14 C 0.08 1.91 5.50 -17.28 -0.10 1.82 16 15 N -0.72 -18.85 11.85 55.57 0.66 -18.19 16 16 Si 0.92 17.93 29.56 -169.99 -5.03 12.91 16 17 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 18 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 N -0.55 -13.15 3.26 -120.84 -0.39 -13.54 16 21 C 0.10 1.91 10.92 59.85 0.65 2.57 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.05 0.74 7.36 -51.93 -0.38 0.36 16 24 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.09 2.08 7.75 -51.93 -0.40 1.68 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.05 0.74 7.37 -51.93 -0.38 0.36 16 29 H 0.10 1.77 7.02 -52.48 -0.37 1.40 16 30 H 0.10 1.68 8.06 -52.49 -0.42 1.25 16 31 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.28 6.59 8.29 -40.82 -0.34 6.25 16 33 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 34 H 0.07 1.28 7.34 -51.93 -0.38 0.90 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 293.49 15.07 4.42 4.42 Total: -1.00 -29.91 293.49 -8.59 -38.50 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -4.81 Total: 3.45 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -3.35 Total: -12.34 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: 0.17 Total: -46.94 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.91 -8.59 -38.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213509913.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.630 kcal (2) G-P(sol) polarization free energy of solvation -29.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds