Wall clock time and date at job start Mon Mar 30 2020 06:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.36398 * 120.07453 * 59.99785 * 4 2 1 6 6 C 1.38996 * 120.76061 * 180.02562 * 5 4 2 7 7 C 1.38007 * 120.57354 * 0.02562 * 6 5 4 8 8 C 1.38680 * 119.76351 * 359.97438 * 7 6 5 9 9 C 1.40502 * 120.07774 * 239.72700 * 4 2 1 10 10 N 1.33972 * 133.19774 * 359.97438 * 9 4 2 11 11 C 1.32462 * 109.78313 * 179.97438 * 10 9 4 12 12 C 1.40186 * 125.30421 * 180.02562 * 11 10 9 13 13 H 1.07995 * 120.00660 * 179.97438 * 12 11 10 14 14 C 1.40357 * 119.99681 * 359.97438 * 12 11 10 15 15 N 1.30587 * 119.99948 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99596 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47732 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47100 * 120.00219 * 16 14 12 19 19 H 1.48505 * 109.46953 * 239.99338 * 16 14 12 20 20 N 1.37863 * 109.39642 * 359.44710 * 11 10 9 21 21 C 1.46502 * 126.53740 * 179.97438 * 20 11 10 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 25 25 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 29 29 H 1.08003 * 119.61771 * 359.97438 * 5 4 2 30 30 H 1.07995 * 119.71331 * 180.02562 * 6 5 4 31 31 H 1.07997 * 120.12106 * 179.97438 * 7 6 5 32 32 H 0.96998 * 119.99793 * 180.02562 * 15 14 12 33 33 H 1.09007 * 109.46993 * 270.81447 * 21 20 11 34 34 H 1.08993 * 109.47029 * 30.81261 * 21 20 11 35 35 H 1.08996 * 109.47023 * 150.81558 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.7038 -0.2459 -2.4700 6 6 2.1589 -0.8903 -3.6143 7 6 2.9529 -2.0150 -3.5179 8 6 3.3009 -2.5069 -2.2688 9 6 2.8450 -1.8496 -1.1032 10 7 3.3266 -2.5193 -0.0476 11 6 4.0555 -3.5449 -0.4619 12 6 4.7115 -4.4616 0.3714 13 1 5.2845 -5.2692 -0.0596 14 6 4.6236 -4.3299 1.7661 15 7 3.9311 -3.3531 2.2873 16 14 5.4983 -5.5511 2.8764 17 1 6.2094 -6.5551 2.0449 18 1 6.4777 -4.8311 3.7294 19 1 4.5027 -6.2381 3.7379 20 7 4.0578 -3.5779 -1.8401 21 6 4.7456 -4.5548 -2.6880 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.8934 -0.5137 0.8900 26 1 1.6767 1.9563 0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.0822 0.6324 -2.5634 30 1 1.8888 -0.5077 -4.5874 31 1 3.3021 -2.5102 -4.4118 32 1 3.8707 -3.2619 3.2510 33 1 5.7561 -4.2047 -2.8993 34 1 4.7938 -5.5136 -2.1720 35 1 4.1988 -4.6727 -3.6235 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213509913.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:55 Heat of formation + Delta-G solvation = 31.923597 kcal Electronic energy + Delta-G solvation = -17497.983846 eV Core-core repulsion = 14880.999767 eV Total energy + Delta-G solvation = -2616.984079 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.13528 -38.59315 -35.92664 -35.13848 -34.17710 -30.69468 -29.90100 -27.89596 -27.68564 -27.33339 -23.67883 -22.46560 -22.17160 -19.95328 -18.78757 -17.86664 -17.24162 -16.54085 -16.11332 -15.77794 -15.45887 -14.94721 -14.40077 -14.26617 -14.14125 -13.62037 -13.55149 -13.30235 -13.05157 -12.91676 -12.72504 -12.65392 -12.43861 -12.18498 -11.89968 -11.87098 -11.47598 -11.37231 -11.06295 -10.61098 -9.74994 -9.00280 -8.48413 -8.46824 -6.51606 0.54313 1.04002 1.40533 1.44350 1.57466 2.16446 2.37191 2.48034 3.19116 3.62139 3.91614 4.06868 4.18345 4.29505 4.43764 4.47290 4.51549 4.58776 4.66826 4.72423 4.87204 4.91746 4.97183 5.02290 5.05244 5.18056 5.20974 5.34065 5.48583 5.51353 5.68585 5.73768 5.97837 6.01517 6.20717 6.32532 6.58160 6.81829 7.22513 8.11016 8.44352 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022402 B = 0.008540 C = 0.006456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.572827 B = 3277.784912 C = 4336.281381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.050 4.050 3 C -0.125 4.125 4 C -0.094 4.094 5 C -0.121 4.121 6 C -0.159 4.159 7 C -0.116 4.116 8 C -0.029 4.029 9 C 0.054 3.946 10 N -0.573 5.573 11 C 0.383 3.617 12 C -0.472 4.472 13 H 0.101 0.899 14 C 0.030 3.970 15 N -0.767 5.767 16 Si 1.000 3.000 17 H -0.247 1.247 18 H -0.267 1.267 19 H -0.267 1.267 20 N -0.551 5.551 21 C 0.099 3.901 22 H 0.029 0.971 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.039 0.961 26 H 0.066 0.934 27 H 0.029 0.971 28 H 0.073 0.927 29 H 0.140 0.860 30 H 0.148 0.852 31 H 0.123 0.877 32 H 0.282 0.718 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.624 2.079 -5.924 6.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.069 4.069 3 C -0.182 4.182 4 C -0.097 4.097 5 C -0.141 4.141 6 C -0.180 4.180 7 C -0.138 4.138 8 C -0.137 4.137 9 C -0.071 4.071 10 N -0.298 5.298 11 C 0.144 3.856 12 C -0.510 4.510 13 H 0.119 0.881 14 C -0.192 4.192 15 N -0.391 5.391 16 Si 0.819 3.181 17 H -0.170 1.170 18 H -0.192 1.192 19 H -0.192 1.192 20 N -0.247 5.247 21 C -0.043 4.043 22 H 0.048 0.952 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.158 0.842 30 H 0.165 0.835 31 H 0.141 0.859 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.778 2.287 -5.008 5.786 hybrid contribution 0.693 -0.937 -0.160 1.176 sum -1.085 1.350 -5.168 5.450 Atomic orbital electron populations 1.21716 0.93355 1.00587 1.02577 1.19860 0.96357 0.95862 0.94808 1.21716 0.99605 0.94344 1.02573 1.18982 0.99961 0.94699 0.96067 1.20459 1.01973 1.00952 0.90751 1.20862 1.01520 0.96679 0.98904 1.19999 1.02290 0.98838 0.92654 1.19381 1.03104 0.94125 0.97052 1.20001 0.99638 0.97406 0.90053 1.71191 1.21609 1.10487 1.26467 1.20874 0.92642 0.93213 0.78891 1.18957 1.29958 1.10920 0.91139 0.88132 1.26947 0.94977 0.97673 0.99614 1.70127 1.28574 1.26870 1.13502 0.84900 0.78149 0.77647 0.77373 1.17000 1.19232 1.19219 1.45678 1.46460 1.25602 1.06925 1.21698 0.96663 0.91568 0.94422 0.95185 0.90764 0.91464 0.94198 0.91464 0.95216 0.90766 0.84212 0.83459 0.85860 0.90773 0.91930 0.90060 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.14 9.00 71.98 0.65 -3.49 16 2 C -0.05 -2.04 3.10 -11.54 -0.04 -2.07 16 3 C -0.13 -4.15 9.00 71.98 0.65 -3.50 16 4 C -0.09 -4.25 4.81 -19.74 -0.09 -4.35 16 5 C -0.12 -4.47 8.64 22.02 0.19 -4.28 16 6 C -0.16 -5.59 10.04 22.40 0.22 -5.36 16 7 C -0.12 -4.64 10.04 22.32 0.22 -4.41 16 8 C -0.03 -1.42 6.88 39.05 0.27 -1.15 16 9 C 0.05 2.96 6.89 40.14 0.28 3.23 16 10 N -0.57 -34.77 9.06 -186.52 -1.69 -36.46 16 11 C 0.38 21.93 7.41 133.69 0.99 22.92 16 12 C -0.47 -25.34 8.99 23.26 0.21 -25.13 16 13 H 0.10 4.83 7.11 -2.91 -0.02 4.81 16 14 C 0.03 1.55 5.50 85.39 0.47 2.02 16 15 N -0.77 -43.03 11.85 21.90 0.26 -42.77 16 16 Si 1.00 37.78 29.56 68.60 2.03 39.80 16 17 H -0.25 -8.64 7.11 99.48 0.71 -7.94 16 18 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 19 H -0.27 -9.79 7.11 99.48 0.71 -9.09 16 20 N -0.55 -27.18 3.26 -536.24 -1.75 -28.93 16 21 C 0.10 3.56 10.92 127.77 1.40 4.96 16 22 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.07 2.05 7.36 -2.39 -0.02 2.03 16 24 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 25 H 0.04 1.99 7.75 -2.39 -0.02 1.97 16 26 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 2.05 7.37 -2.39 -0.02 2.03 16 29 H 0.14 4.09 7.02 -2.91 -0.02 4.07 16 30 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 31 H 0.12 4.11 8.06 -2.91 -0.02 4.08 16 32 H 0.28 14.25 8.29 -92.71 -0.77 13.48 16 33 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.08 2.78 7.34 -2.39 -0.02 2.76 16 35 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -70.80 293.49 5.34 -65.46 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 1.08 Total: 23.49 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 5.42 Total: -20.60 kcal Atomic # 7 Polarization: -104.98 SS G_CDS: -3.18 Total: -108.16 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.80 kcal Total: -70.80 5.34 -65.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213509913.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.386 kcal (2) G-P(sol) polarization free energy of solvation -70.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds