Wall clock time and date at job start Mon Mar 30 2020 06:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46924 * 2 1 4 4 C 1.53003 * 109.47368 * 240.00071 * 2 1 3 5 5 C 1.50704 * 109.47208 * 119.99481 * 2 1 3 6 6 N 1.30337 * 124.93476 * 254.98073 * 5 2 1 7 7 C 1.34808 * 109.89193 * 179.73916 * 6 5 2 8 8 C 1.40459 * 133.22198 * 179.52000 * 7 6 5 9 9 C 1.35781 * 120.21617 * 180.47303 * 8 7 6 10 10 C 1.41211 * 120.43175 * 0.25204 * 9 8 7 11 11 C 1.41086 * 120.04356 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00010 * 330.08484 * 11 10 9 13 13 C 1.39923 * 120.00330 * 150.08287 * 11 10 9 14 14 N 1.30853 * 120.00401 * 161.70887 * 13 11 10 15 15 Si 1.86808 * 119.99575 * 341.70792 * 13 11 10 16 16 H 1.48501 * 109.46950 * 95.41615 * 15 13 11 17 17 H 1.48499 * 109.46872 * 215.41576 * 15 13 11 18 18 H 1.48494 * 109.47096 * 335.41603 * 15 13 11 19 19 C 1.40626 * 119.91471 * 0.02562 * 10 9 8 20 20 C 1.38014 * 119.48629 * 0.02562 * 19 10 9 21 21 N 1.35919 * 124.92997 * 75.00349 * 5 2 1 22 22 H 0.97006 * 126.45431 * 359.97438 * 21 5 2 23 23 H 1.08994 * 109.47581 * 300.00377 * 1 2 3 24 24 H 1.09005 * 109.47147 * 60.00619 * 1 2 3 25 25 H 1.09005 * 109.46787 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47100 * 179.97438 * 3 2 1 27 27 H 1.09005 * 109.46703 * 299.99653 * 3 2 1 28 28 H 1.08994 * 109.47099 * 59.99966 * 3 2 1 29 29 H 1.08996 * 109.47012 * 299.99675 * 4 2 1 30 30 H 1.08994 * 109.47345 * 60.00017 * 4 2 1 31 31 H 1.09003 * 109.46775 * 179.97438 * 4 2 1 32 32 H 1.07995 * 119.89105 * 0.74217 * 8 7 6 33 33 H 1.07996 * 119.78375 * 180.27420 * 9 8 7 34 34 H 0.96996 * 120.00506 * 180.02562 * 14 13 11 35 35 H 1.08001 * 120.25539 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7103 1.2306 6 7 2.5422 -0.1222 2.2760 7 6 2.8854 -1.0432 3.1986 8 6 3.4697 -0.9568 4.4730 9 6 3.7140 -2.0833 5.1905 10 6 3.3892 -3.3521 4.6626 11 6 3.6461 -4.5173 5.4155 12 1 4.4700 -4.5385 6.1134 13 6 2.8335 -5.6454 5.2580 14 7 3.2554 -6.8170 5.6600 15 14 1.1462 -5.4789 4.4739 16 1 1.2402 -5.7934 3.0256 17 1 0.2025 -6.4226 5.1251 18 1 0.6546 -4.0885 4.6476 19 6 2.8092 -3.4527 3.3855 20 6 2.5633 -2.3055 2.6587 21 7 2.0199 -2.0574 1.4111 22 1 1.6921 -2.7201 0.7832 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1300 1.4426 0.0005 27 1 1.6766 1.9564 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6768 -1.7489 -1.2492 30 1 1.6768 -0.2075 -2.1392 31 1 3.1301 -0.7208 -1.2494 32 1 3.7213 0.0091 4.8853 33 1 4.1594 -2.0084 6.1715 34 1 2.6923 -7.5991 5.5505 35 1 2.5582 -4.4203 2.9765 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000215678507.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:07 Heat of formation + Delta-G solvation = 40.414971 kcal Electronic energy + Delta-G solvation = -17296.667908 eV Core-core repulsion = 14680.052042 eV Total energy + Delta-G solvation = -2616.615865 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 7.02 seconds Orbital eigenvalues (eV) -41.13441 -37.19799 -35.62142 -33.36105 -32.14962 -29.52003 -28.58663 -27.28329 -27.04697 -24.87186 -22.54112 -20.99780 -20.53270 -18.81470 -17.52101 -16.82854 -15.82229 -15.19987 -14.67996 -14.35315 -13.86066 -13.60963 -13.56818 -13.05695 -12.64951 -12.61552 -12.31254 -12.09635 -11.64305 -11.57621 -11.15528 -10.97627 -10.89249 -10.83591 -10.70679 -10.36114 -10.21932 -9.95009 -9.60149 -9.22739 -8.84594 -7.35482 -7.10476 -7.03936 -4.50698 2.11668 2.71508 3.04111 3.17908 3.27213 3.67339 3.73691 3.94300 4.53414 4.60960 4.89033 5.04417 5.28075 5.36135 5.54397 5.60848 5.69602 5.74089 5.88910 5.96101 5.97428 6.04590 6.21602 6.32930 6.40008 6.47037 6.55483 6.66477 6.71055 6.99564 7.18199 7.47798 7.66219 7.74597 7.94972 8.25159 8.30026 8.49539 8.71064 8.94730 9.97245 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.033137 B = 0.006910 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.772755 B = 4051.105632 C = 4567.106824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.020 3.980 3 C -0.124 4.124 4 C -0.143 4.143 5 C 0.218 3.782 6 N -0.472 5.472 7 C -0.057 4.057 8 C -0.045 4.045 9 C -0.174 4.174 10 C 0.109 3.891 11 C -0.434 4.434 12 H 0.095 0.905 13 C 0.084 3.916 14 N -0.802 5.802 15 Si 0.918 3.082 16 H -0.275 1.275 17 H -0.292 1.292 18 H -0.244 1.244 19 C -0.279 4.279 20 C 0.114 3.886 21 N -0.613 5.613 22 H 0.407 0.593 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.111 0.889 34 H 0.286 0.714 35 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.947 7.935 -10.191 13.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.018 3.982 3 C -0.182 4.182 4 C -0.201 4.201 5 C -0.046 4.046 6 N -0.191 5.191 7 C -0.174 4.174 8 C -0.064 4.064 9 C -0.194 4.194 10 C 0.105 3.895 11 C -0.462 4.462 12 H 0.113 0.887 13 C -0.135 4.135 14 N -0.426 5.426 15 Si 0.745 3.255 16 H -0.202 1.202 17 H -0.220 1.220 18 H -0.167 1.167 19 C -0.303 4.303 20 C 0.005 3.995 21 N -0.226 5.226 22 H 0.243 0.757 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.097 0.903 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.771 8.589 -9.899 13.947 hybrid contribution -0.969 -1.567 -0.708 1.974 sum -5.740 7.022 -10.608 13.956 Atomic orbital electron populations 1.21892 0.93710 1.01875 1.02210 1.18919 0.95128 0.95376 0.88776 1.21635 1.01550 0.93367 1.01612 1.21913 1.01734 0.99891 0.96531 1.22621 1.04621 0.80147 0.97248 1.69636 1.16165 1.32877 1.00446 1.18502 1.13399 0.88200 0.97334 1.19637 0.97828 0.97713 0.91267 1.20794 1.07160 0.91847 0.99621 1.17430 0.89152 0.92810 0.90129 1.19469 1.12953 0.93799 1.19966 0.88680 1.26196 1.00821 0.93986 0.92529 1.69706 1.37372 0.99649 1.35872 0.86177 0.80889 0.80026 0.78432 1.20176 1.22016 1.16747 1.19600 1.20303 0.93646 0.96779 1.18764 0.98278 0.97160 0.85318 1.42740 1.55650 1.07764 1.16438 0.75661 0.92006 0.91973 0.92922 0.92266 0.92836 0.91476 0.92970 0.91734 0.92099 0.87730 0.87052 0.90316 0.88355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.46 37.16 0.31 -1.32 16 2 C 0.02 0.27 0.99 -155.65 -0.15 0.12 16 3 C -0.12 -1.57 7.99 37.16 0.30 -1.27 16 4 C -0.14 -1.60 8.33 37.16 0.31 -1.29 16 5 C 0.22 4.02 6.40 -154.74 -0.99 3.03 16 6 N -0.47 -10.18 10.45 -8.12 -0.08 -10.26 16 7 C -0.06 -1.34 7.23 -84.67 -0.61 -1.95 16 8 C -0.04 -1.00 10.02 -39.63 -0.40 -1.40 16 9 C -0.17 -4.01 9.69 -39.33 -0.38 -4.39 16 10 C 0.11 2.76 5.11 -106.79 -0.55 2.22 16 11 C -0.43 -11.45 9.54 -37.87 -0.36 -11.82 16 12 H 0.10 2.58 8.06 -52.49 -0.42 2.16 16 13 C 0.08 2.18 5.40 -17.34 -0.09 2.08 16 14 N -0.80 -20.95 13.93 55.55 0.77 -20.17 16 15 Si 0.92 20.97 24.51 -169.99 -4.17 16.80 16 16 H -0.28 -6.13 6.70 56.52 0.38 -5.75 16 17 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.24 -5.84 6.87 56.52 0.39 -5.45 16 19 C -0.28 -6.88 7.18 -38.76 -0.28 -7.16 16 20 C 0.11 2.65 7.28 -83.96 -0.61 2.04 16 21 N -0.61 -11.80 6.06 -7.98 -0.05 -11.85 16 22 H 0.41 6.56 8.44 -40.82 -0.34 6.21 16 23 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 29 H 0.05 0.55 7.60 -51.93 -0.39 0.16 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 33 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 34 H 0.29 6.77 8.30 -40.82 -0.34 6.43 16 35 H 0.10 2.41 4.73 -52.49 -0.25 2.17 16 LS Contribution 287.53 15.07 4.33 4.33 Total: -1.00 -29.14 287.53 -7.50 -36.64 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.80 Total: 5.62 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -3.50 Total: -21.11 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.64 Total: -42.29 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.17 Total: 16.80 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.14 -7.50 -36.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215678507.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.059 kcal (2) G-P(sol) polarization free energy of solvation -29.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.02 seconds