Wall clock time and date at job start Mon Mar 30 2020 06:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47168 * 2 1 4 4 C 1.53001 * 109.47094 * 239.99761 * 2 1 3 5 5 C 1.50704 * 109.47047 * 120.00022 * 2 1 3 6 6 N 1.31088 * 125.25115 * 239.97300 * 5 2 1 7 7 C 1.32973 * 110.06119 * 180.02562 * 6 5 2 8 8 C 1.39438 * 107.43835 * 0.02562 * 7 6 5 9 9 C 1.39406 * 132.97378 * 180.02562 * 8 7 6 10 10 C 1.40690 * 118.86677 * 180.02562 * 9 8 7 11 11 C 1.40436 * 120.75763 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99673 * 23.04196 * 11 10 9 13 13 C 1.39719 * 120.00143 * 203.05565 * 11 10 9 14 14 N 1.30985 * 120.00059 * 17.42207 * 13 11 10 15 15 Si 1.86797 * 119.99999 * 197.42729 * 13 11 10 16 16 H 1.48499 * 109.47368 * 94.67494 * 15 13 11 17 17 H 1.48506 * 109.47381 * 214.67859 * 15 13 11 18 18 H 1.48506 * 109.47122 * 334.67415 * 15 13 11 19 19 C 1.46929 * 118.48796 * 359.95129 * 10 9 8 20 20 C 1.34033 * 119.65115 * 0.03496 * 19 10 9 21 21 N 1.35929 * 125.24990 * 60.00196 * 5 2 1 22 22 H 1.08995 * 109.47184 * 299.99725 * 1 2 3 23 23 H 1.09000 * 109.47015 * 60.00382 * 1 2 3 24 24 H 1.08999 * 109.47216 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46954 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.46841 * 299.99725 * 3 2 1 27 27 H 1.08994 * 109.47354 * 59.99930 * 3 2 1 28 28 H 1.08999 * 109.47268 * 300.00187 * 4 2 1 29 29 H 1.09000 * 109.47307 * 60.00036 * 4 2 1 30 30 H 1.08999 * 109.47280 * 180.02562 * 4 2 1 31 31 H 1.08001 * 126.27761 * 179.97438 * 7 6 5 32 32 H 1.08003 * 120.56292 * 359.97223 * 9 8 7 33 33 H 0.97000 * 119.99408 * 180.02562 * 14 13 11 34 34 H 1.08003 * 120.17161 * 180.31191 * 19 10 9 35 35 H 1.08002 * 119.42450 * 179.97438 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 7 2.7896 -0.1752 2.1570 7 6 3.0534 -1.0706 3.1040 8 6 2.4151 -2.2575 2.7463 9 6 2.3385 -3.5135 3.3464 10 6 1.5938 -4.5249 2.7124 11 6 1.4905 -5.8046 3.2814 12 1 1.6442 -5.9379 4.3421 13 6 1.1892 -6.9054 2.4754 14 7 1.3364 -6.8257 1.1763 15 14 0.5761 -8.4906 3.2503 16 1 -0.9086 -8.5093 3.2307 17 1 1.0961 -9.6505 2.4824 18 1 1.0537 -8.5723 4.6542 19 6 0.9262 -4.2116 1.4416 20 6 1.0397 -2.9829 0.9182 21 7 1.7706 -2.0053 1.5506 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.1300 1.4424 -0.0005 26 1 1.6767 1.9562 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 1.6767 -1.7490 -1.2492 29 1 1.6767 -0.2075 -2.1392 30 1 3.1300 -0.7217 -1.2490 31 1 3.6529 -0.9084 3.9877 32 1 2.8429 -3.7070 4.2815 33 1 1.1268 -7.5898 0.6167 34 1 0.3433 -4.9661 0.9341 35 1 0.5478 -2.7567 -0.0163 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000215678857.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:48 Heat of formation + Delta-G solvation = 40.513528 kcal Electronic energy + Delta-G solvation = -17471.058045 eV Core-core repulsion = 14854.446453 eV Total energy + Delta-G solvation = -2616.611592 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = -0.07 seconds Orbital eigenvalues (eV) -43.04433 -38.23194 -37.26036 -35.64208 -33.25792 -31.08129 -29.55387 -28.16942 -28.13840 -26.70350 -23.80196 -23.20648 -22.36140 -20.28461 -19.35618 -17.74241 -17.06345 -16.77172 -16.34213 -15.72531 -15.61928 -15.16848 -14.85427 -14.44769 -14.21883 -13.93540 -13.30255 -13.11187 -13.01452 -12.90457 -12.83922 -12.60353 -12.40319 -12.16853 -12.01037 -11.85116 -11.83357 -11.49604 -11.43506 -10.80800 -10.65399 -9.76915 -8.94050 -8.22263 -6.40533 0.45497 0.83615 1.39414 1.47771 1.53739 2.14076 2.16768 2.37918 2.47709 3.37983 3.53959 3.83920 3.93248 4.09237 4.25044 4.38438 4.57724 4.71375 4.72309 4.80007 4.84954 4.86089 4.97086 4.99624 5.01037 5.07093 5.15244 5.19778 5.33437 5.41873 5.48727 5.61899 5.74504 6.02657 6.11447 6.26486 6.60826 6.69342 6.88456 7.38965 8.07677 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.039155 B = 0.006264 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.935985 B = 4469.013811 C = 4933.379234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.027 3.973 3 C -0.114 4.114 4 C -0.139 4.139 5 C 0.107 3.893 6 N -0.464 5.464 7 C -0.162 4.162 8 C 0.080 3.920 9 C -0.334 4.334 10 C 0.095 3.905 11 C -0.457 4.457 12 H 0.085 0.915 13 C 0.041 3.959 14 N -0.802 5.802 15 Si 0.992 3.008 16 H -0.256 1.256 17 H -0.264 1.264 18 H -0.260 1.260 19 C -0.126 4.126 20 C 0.028 3.972 21 N -0.389 5.389 22 H 0.045 0.955 23 H 0.096 0.904 24 H 0.047 0.953 25 H 0.045 0.955 26 H 0.087 0.913 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.096 0.904 30 H 0.042 0.958 31 H 0.166 0.834 32 H 0.107 0.893 33 H 0.301 0.699 34 H 0.152 0.848 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.586 3.328 -6.112 8.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.025 3.975 3 C -0.172 4.172 4 C -0.197 4.197 5 C -0.146 4.146 6 N -0.178 5.178 7 C -0.311 4.311 8 C -0.030 4.030 9 C -0.356 4.356 10 C 0.089 3.911 11 C -0.485 4.485 12 H 0.104 0.896 13 C -0.178 4.178 14 N -0.426 5.426 15 Si 0.812 3.188 16 H -0.180 1.180 17 H -0.188 1.188 18 H -0.184 1.184 19 C -0.148 4.148 20 C -0.090 4.090 21 N -0.065 5.065 22 H 0.064 0.936 23 H 0.114 0.886 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.106 0.894 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.115 0.885 30 H 0.061 0.939 31 H 0.183 0.817 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.169 0.831 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.322 4.142 -6.456 8.804 hybrid contribution -0.023 -1.694 0.829 1.886 sum -4.345 2.448 -5.627 7.519 Atomic orbital electron populations 1.21933 0.92769 1.01928 1.02959 1.18985 0.95837 0.95242 0.87438 1.21555 1.00707 0.92761 1.02180 1.21938 1.00686 1.00096 0.96945 1.23420 1.07657 0.81418 1.02090 1.69368 1.13768 1.32133 1.02511 1.22266 1.15129 0.89618 1.04126 1.19727 0.98375 0.96747 0.88197 1.20080 1.16151 0.92783 1.06634 1.18975 0.88060 0.93467 0.90555 1.19723 1.40290 0.91738 0.96797 0.89646 1.26899 0.91528 1.04463 0.94896 1.69826 1.31919 1.34392 1.06499 0.85016 0.79490 0.74964 0.79346 1.17993 1.18782 1.18404 1.22396 1.00782 0.94365 0.97248 1.21656 0.99329 0.88307 0.99675 1.42660 1.36024 1.10315 1.17551 0.93601 0.88572 0.93362 0.93596 0.89390 0.93419 0.93502 0.88513 0.93864 0.81708 0.87530 0.88779 0.83070 0.80957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 8.38 71.98 0.60 -3.07 16 2 C 0.03 0.84 0.84 -52.93 -0.04 0.80 16 3 C -0.11 -3.17 7.92 71.98 0.57 -2.60 16 4 C -0.14 -3.81 8.38 71.98 0.60 -3.21 16 5 C 0.11 4.55 6.26 137.67 0.86 5.42 16 6 N -0.46 -21.70 10.41 -184.32 -1.92 -23.62 16 7 C -0.16 -7.94 12.06 84.81 1.02 -6.92 16 8 C 0.08 4.12 6.77 38.72 0.26 4.38 16 9 C -0.33 -17.58 9.94 23.15 0.23 -17.35 16 10 C 0.09 4.92 5.73 -19.87 -0.11 4.81 16 11 C -0.46 -22.73 9.04 23.16 0.21 -22.52 16 12 H 0.09 4.16 7.90 -2.91 -0.02 4.13 16 13 C 0.04 1.83 5.20 85.18 0.44 2.27 16 14 N -0.80 -36.18 10.86 21.79 0.24 -35.94 16 15 Si 0.99 33.43 29.59 68.60 2.03 35.46 16 16 H -0.26 -8.23 7.11 99.48 0.71 -7.53 16 17 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 18 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 19 C -0.13 -5.89 8.80 23.59 0.21 -5.69 16 20 C 0.03 1.21 9.25 82.85 0.77 1.98 16 21 N -0.39 -18.02 2.97 -337.35 -1.00 -19.02 16 22 H 0.04 1.31 8.14 -2.39 -0.02 1.30 16 23 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.05 1.33 6.02 -2.39 -0.01 1.32 16 25 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 26 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.35 6.01 -2.39 -0.01 1.33 16 29 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.17 7.35 8.06 -2.91 -0.02 7.33 16 32 H 0.11 5.48 8.06 -2.91 -0.02 5.45 16 33 H 0.30 11.92 8.30 -92.71 -0.77 11.15 16 34 H 0.15 6.83 6.23 -2.91 -0.02 6.82 16 35 H 0.17 5.95 5.44 -2.91 -0.02 5.93 16 Total: -1.00 -59.97 286.73 6.05 -53.92 By element: Atomic # 1 Polarization: 29.83 SS G_CDS: 1.08 Total: 30.91 kcal Atomic # 6 Polarization: -47.33 SS G_CDS: 5.62 Total: -41.71 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -2.68 Total: -78.58 kcal Atomic # 14 Polarization: 33.43 SS G_CDS: 2.03 Total: 35.46 kcal Total: -59.97 6.05 -53.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000215678857.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.432 kcal (2) G-P(sol) polarization free energy of solvation -59.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.07 seconds