Wall clock time and date at job start Mon Mar 30 2020 05:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39081 * 119.09876 * 2 1 4 4 C 1.37814 * 121.26281 * 180.02562 * 3 2 1 5 5 C 1.38966 * 119.37354 * 359.97438 * 4 3 2 6 6 C 1.46960 * 119.57679 * 0.02562 * 5 4 3 7 7 C 1.36195 * 119.09931 * 179.97438 * 2 1 3 8 8 N 1.32321 * 106.49438 * 180.02562 * 6 5 4 9 9 N 1.28263 * 112.90156 * 0.02562 * 8 6 5 10 10 C 1.46505 * 124.14837 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.47059 * 299.97629 * 10 9 8 12 12 C 1.53001 * 109.47060 * 59.97587 * 10 9 8 13 13 C 1.37415 * 111.70432 * 0.02562 * 9 8 6 14 14 C 1.39034 * 127.45685 * 179.97438 * 13 9 8 15 15 H 1.07999 * 119.99934 * 322.18879 * 14 13 9 16 16 C 1.40357 * 119.99946 * 142.19966 * 14 13 9 17 17 N 1.30685 * 120.00071 * 156.55745 * 16 14 13 18 18 Si 1.86801 * 120.00255 * 336.55726 * 16 14 13 19 19 H 1.48499 * 109.47274 * 95.41965 * 18 16 14 20 20 H 1.48493 * 109.47414 * 215.42143 * 18 16 14 21 21 H 1.48508 * 109.46821 * 335.42317 * 18 16 14 22 22 H 1.08999 * 109.46816 * 89.99789 * 1 2 3 23 23 H 1.08997 * 109.47161 * 210.00017 * 1 2 3 24 24 H 1.08999 * 109.46708 * 330.00014 * 1 2 3 25 25 H 1.07996 * 119.37123 * 359.97438 * 3 2 1 26 26 H 1.08006 * 120.31142 * 179.70309 * 4 3 2 27 27 H 1.08000 * 120.16505 * 0.04247 * 7 2 1 28 28 H 1.08996 * 109.46808 * 179.97438 * 10 9 8 29 29 H 1.09003 * 109.47000 * 59.99716 * 11 10 9 30 30 H 1.08997 * 109.47166 * 180.02562 * 11 10 9 31 31 H 1.09001 * 109.46986 * 300.00163 * 11 10 9 32 32 H 1.08998 * 109.47200 * 59.99985 * 12 10 9 33 33 H 1.08997 * 109.46977 * 180.02562 * 12 10 9 34 34 H 1.09005 * 109.46650 * 299.99911 * 12 10 9 35 35 H 0.96999 * 119.99914 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1833 1.2153 0.0000 4 6 3.5605 1.2673 -0.0005 5 6 4.2874 0.0829 -0.0005 6 6 3.5775 -1.2039 -0.0005 7 6 2.1693 -1.1900 0.0005 8 7 4.5069 -2.1457 0.0000 9 7 5.6985 -1.6711 0.0009 10 6 6.9111 -2.4931 0.0012 11 6 6.9282 -3.3765 1.2503 12 6 6.9290 -3.3761 -1.2482 13 6 5.6981 -0.2969 0.0016 14 6 6.8016 0.5489 0.0032 15 1 7.6791 0.2907 0.5773 16 6 6.7750 1.7385 -0.7412 17 7 7.5573 2.7325 -0.4128 18 14 5.6214 1.9010 -2.2015 19 1 4.3679 2.5702 -1.7700 20 1 6.2751 2.7103 -3.2611 21 1 5.3040 0.5516 -2.7341 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6186 2.1358 -0.0004 26 1 4.0700 2.2196 -0.0054 27 1 1.6174 -2.1183 0.0003 28 1 7.7885 -1.8463 0.0015 29 1 6.0507 -4.0233 1.2499 30 1 7.8306 -3.9878 1.2507 31 1 6.9154 -2.7475 2.1404 32 1 6.9168 -2.7468 -2.1381 33 1 7.8310 -3.9880 -1.2478 34 1 6.0515 -4.0229 -1.2485 35 1 7.5392 3.5545 -0.9275 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220192648.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:38 Heat of formation + Delta-G solvation = 69.518379 kcal Electronic energy + Delta-G solvation = -17662.031399 eV Core-core repulsion = 15046.677552 eV Total energy + Delta-G solvation = -2615.353847 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.50707 -37.01800 -34.32851 -34.02297 -31.37209 -30.27875 -28.78899 -26.87746 -26.22910 -25.08671 -22.50882 -21.29282 -19.83355 -18.71376 -17.48108 -16.12418 -15.71437 -14.91389 -14.38993 -13.91003 -13.78346 -13.66869 -13.06766 -12.98850 -12.89208 -12.36678 -12.03419 -11.89583 -11.79431 -11.38837 -11.22807 -11.16432 -11.02672 -10.70839 -10.52713 -10.32982 -10.11830 -9.84499 -9.58655 -8.62762 -8.50044 -7.29716 -7.22202 -6.66008 -4.60121 1.94586 2.85304 2.98850 3.11429 3.23564 3.67537 3.74119 3.88606 4.60914 5.04448 5.13178 5.45830 5.48843 5.64090 5.72639 5.86652 5.94484 5.98609 6.01769 6.11790 6.13532 6.17174 6.32605 6.37260 6.49964 6.56093 6.62245 6.67899 6.84030 6.91229 7.35262 7.43725 7.61234 7.73479 7.90248 8.02107 8.24348 8.33372 8.64230 9.74726 9.79651 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.016065 B = 0.012627 C = 0.007969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.463442 B = 2216.879508 C = 3512.978723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.049 4.049 3 C -0.238 4.238 4 C -0.004 4.004 5 C -0.270 4.270 6 C 0.107 3.893 7 C -0.147 4.147 8 N -0.397 5.397 9 N -0.316 5.316 10 C 0.157 3.843 11 C -0.157 4.157 12 C -0.153 4.153 13 C 0.226 3.774 14 C -0.440 4.440 15 H 0.101 0.899 16 C 0.107 3.893 17 N -0.781 5.781 18 Si 0.890 3.110 19 H -0.241 1.241 20 H -0.284 1.284 21 H -0.252 1.252 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.463 -3.886 -1.179 4.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.053 4.053 3 C -0.259 4.259 4 C -0.024 4.024 5 C -0.279 4.279 6 C -0.044 4.044 7 C -0.169 4.169 8 N -0.225 5.225 9 N -0.099 5.099 10 C 0.055 3.945 11 C -0.215 4.215 12 C -0.211 4.211 13 C 0.101 3.899 14 C -0.476 4.476 15 H 0.119 0.881 16 C -0.118 4.118 17 N -0.405 5.405 18 Si 0.714 3.286 19 H -0.165 1.165 20 H -0.210 1.210 21 H -0.175 1.175 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.118 0.882 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.073 -5.043 -1.170 5.577 hybrid contribution -0.294 1.127 -0.551 1.288 sum -2.367 -3.917 -1.722 4.889 Atomic orbital electron populations 1.20718 0.92855 1.01482 1.01130 1.18967 0.94317 0.92934 0.99097 1.20124 0.93324 0.95972 1.16460 1.20173 0.93222 0.95547 0.93430 1.20314 0.91678 0.94424 1.21470 1.20197 0.93389 0.89935 1.00901 1.19245 0.89713 0.96342 1.11589 1.72597 0.89259 1.25903 1.34757 1.45732 1.04109 1.03767 1.56290 1.21092 0.85159 0.92285 0.95966 1.22097 1.02243 0.99872 0.97253 1.22036 1.02174 0.99703 0.97202 1.19900 0.92768 0.83048 0.94183 1.18143 1.00813 1.01409 1.27199 0.88136 1.25923 0.94762 0.93216 0.97906 1.69601 1.32837 1.03005 1.35031 0.86658 0.80950 0.81114 0.79906 1.16541 1.21030 1.17518 0.92270 0.92505 0.92427 0.88240 0.87615 0.87948 0.87941 0.91498 0.91755 0.92501 0.92326 0.91696 0.91553 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.62 9.96 36.00 0.36 -1.26 16 2 C -0.05 -1.01 5.84 -105.05 -0.61 -1.62 16 3 C -0.24 -5.12 9.60 -39.42 -0.38 -5.50 16 4 C 0.00 -0.10 7.43 -39.47 -0.29 -0.39 16 5 C -0.27 -6.93 5.21 -102.94 -0.54 -7.47 16 6 C 0.11 2.69 7.51 -83.15 -0.62 2.07 16 7 C -0.15 -3.27 9.67 -39.34 -0.38 -3.65 16 8 N -0.40 -9.78 11.37 33.19 0.38 -9.40 16 9 N -0.32 -7.42 3.10 -50.65 -0.16 -7.57 16 10 C 0.16 2.93 3.54 -67.93 -0.24 2.69 16 11 C -0.16 -2.52 9.35 37.16 0.35 -2.18 16 12 C -0.15 -2.49 9.35 37.16 0.35 -2.14 16 13 C 0.23 5.74 5.83 -81.92 -0.48 5.26 16 14 C -0.44 -11.15 8.97 -38.49 -0.35 -11.49 16 15 H 0.10 2.56 7.69 -52.49 -0.40 2.16 16 16 C 0.11 2.64 5.40 -17.24 -0.09 2.54 16 17 N -0.78 -19.17 13.92 55.57 0.77 -18.40 16 18 Si 0.89 20.15 24.38 -169.99 -4.14 16.00 16 19 H -0.24 -5.32 5.36 56.52 0.30 -5.02 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.25 -6.19 7.11 56.52 0.40 -5.79 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 23 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 24 H 0.06 0.80 8.07 -51.93 -0.42 0.38 16 25 H 0.10 1.88 8.06 -52.49 -0.42 1.45 16 26 H 0.11 2.47 5.99 -52.48 -0.31 2.16 16 27 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 28 H 0.10 1.87 6.99 -51.93 -0.36 1.51 16 29 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.13 8.12 -51.93 -0.42 0.70 16 35 H 0.29 6.47 8.29 -40.82 -0.34 6.13 16 LS Contribution 288.15 15.07 4.34 4.34 Total: -1.00 -28.40 288.15 -6.69 -35.09 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -4.95 Total: 3.08 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: -2.93 Total: -23.14 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.99 Total: -35.37 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.14 Total: 16.00 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.40 -6.69 -35.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220192648.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.609 kcal (2) G-P(sol) polarization free energy of solvation -28.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds