Wall clock time and date at job start Mon Mar 30 2020 05:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39081 * 119.09876 * 2 1 4 4 C 1.37814 * 121.26281 * 180.02562 * 3 2 1 5 5 C 1.38966 * 119.37354 * 359.97438 * 4 3 2 6 6 C 1.46960 * 119.57679 * 0.02562 * 5 4 3 7 7 C 1.36195 * 119.09931 * 179.97438 * 2 1 3 8 8 N 1.32321 * 106.49438 * 180.02562 * 6 5 4 9 9 N 1.28263 * 112.90156 * 0.02562 * 8 6 5 10 10 C 1.46505 * 124.14837 * 180.02562 * 9 8 6 11 11 C 1.53003 * 109.47059 * 299.97629 * 10 9 8 12 12 C 1.53001 * 109.47060 * 59.97587 * 10 9 8 13 13 C 1.37415 * 111.70432 * 0.02562 * 9 8 6 14 14 C 1.39034 * 127.45685 * 179.97438 * 13 9 8 15 15 H 1.07999 * 119.99934 * 322.18879 * 14 13 9 16 16 C 1.40357 * 119.99946 * 142.19966 * 14 13 9 17 17 N 1.30685 * 120.00071 * 156.55745 * 16 14 13 18 18 Si 1.86801 * 120.00255 * 336.55726 * 16 14 13 19 19 H 1.48499 * 109.47274 * 95.41965 * 18 16 14 20 20 H 1.48493 * 109.47414 * 215.42143 * 18 16 14 21 21 H 1.48508 * 109.46821 * 335.42317 * 18 16 14 22 22 H 1.08999 * 109.46816 * 89.99789 * 1 2 3 23 23 H 1.08997 * 109.47161 * 210.00017 * 1 2 3 24 24 H 1.08999 * 109.46708 * 330.00014 * 1 2 3 25 25 H 1.07996 * 119.37123 * 359.97438 * 3 2 1 26 26 H 1.08006 * 120.31142 * 179.70309 * 4 3 2 27 27 H 1.08000 * 120.16505 * 0.04247 * 7 2 1 28 28 H 1.08996 * 109.46808 * 179.97438 * 10 9 8 29 29 H 1.09003 * 109.47000 * 59.99716 * 11 10 9 30 30 H 1.08997 * 109.47166 * 180.02562 * 11 10 9 31 31 H 1.09001 * 109.46986 * 300.00163 * 11 10 9 32 32 H 1.08998 * 109.47200 * 59.99985 * 12 10 9 33 33 H 1.08997 * 109.46977 * 180.02562 * 12 10 9 34 34 H 1.09005 * 109.46650 * 299.99911 * 12 10 9 35 35 H 0.96999 * 119.99914 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1833 1.2153 0.0000 4 6 3.5605 1.2673 -0.0005 5 6 4.2874 0.0829 -0.0005 6 6 3.5775 -1.2039 -0.0005 7 6 2.1693 -1.1900 0.0005 8 7 4.5069 -2.1457 0.0000 9 7 5.6985 -1.6711 0.0009 10 6 6.9111 -2.4931 0.0012 11 6 6.9282 -3.3765 1.2503 12 6 6.9290 -3.3761 -1.2482 13 6 5.6981 -0.2969 0.0016 14 6 6.8016 0.5489 0.0032 15 1 7.6791 0.2907 0.5773 16 6 6.7750 1.7385 -0.7412 17 7 7.5573 2.7325 -0.4128 18 14 5.6214 1.9010 -2.2015 19 1 4.3679 2.5702 -1.7700 20 1 6.2751 2.7103 -3.2611 21 1 5.3040 0.5516 -2.7341 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.6186 2.1358 -0.0004 26 1 4.0700 2.2196 -0.0054 27 1 1.6174 -2.1183 0.0003 28 1 7.7885 -1.8463 0.0015 29 1 6.0507 -4.0233 1.2499 30 1 7.8306 -3.9878 1.2507 31 1 6.9154 -2.7475 2.1404 32 1 6.9168 -2.7468 -2.1381 33 1 7.8310 -3.9880 -1.2478 34 1 6.0515 -4.0229 -1.2485 35 1 7.5392 3.5545 -0.9275 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220192648.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:37 Heat of formation + Delta-G solvation = 53.560394 kcal Electronic energy + Delta-G solvation = -17662.723389 eV Core-core repulsion = 15046.677552 eV Total energy + Delta-G solvation = -2616.045837 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.30946 -38.68733 -35.92520 -35.79285 -33.11059 -31.93181 -30.57370 -28.19842 -27.75556 -26.89944 -24.19852 -22.95245 -21.57887 -20.45899 -19.27901 -17.87592 -17.41084 -16.67349 -16.12556 -15.54304 -15.43727 -15.22833 -14.81594 -14.63438 -14.35822 -13.84875 -13.66950 -13.31559 -13.10077 -12.94956 -12.88908 -12.69477 -12.54405 -12.32417 -12.09902 -12.04836 -11.77765 -11.59013 -11.41141 -10.48743 -10.32718 -9.09864 -9.01965 -8.49472 -6.48947 0.15056 1.07770 1.19251 1.27678 1.39301 1.83458 2.06678 2.09999 2.74355 3.24758 3.59393 3.94873 4.04084 4.16361 4.21165 4.37848 4.49360 4.61263 4.67053 4.68329 4.76023 4.79638 4.88692 4.91828 4.97381 5.06107 5.12556 5.20001 5.21878 5.33984 5.60589 5.63625 5.85211 6.00397 6.02377 6.20959 6.40543 6.54770 6.82328 7.90233 7.97524 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.016065 B = 0.012627 C = 0.007969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.463442 B = 2216.879508 C = 3512.978723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.049 4.049 3 C -0.225 4.225 4 C -0.033 4.033 5 C -0.295 4.295 6 C 0.074 3.926 7 C -0.158 4.158 8 N -0.404 5.404 9 N -0.312 5.312 10 C 0.138 3.862 11 C -0.145 4.145 12 C -0.143 4.143 13 C 0.202 3.798 14 C -0.463 4.463 15 H 0.085 0.915 16 C 0.089 3.911 17 N -0.806 5.806 18 Si 0.930 3.070 19 H -0.233 1.233 20 H -0.263 1.263 21 H -0.286 1.286 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.131 0.869 26 H 0.103 0.897 27 H 0.122 0.878 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.106 0.894 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.108 0.892 34 H 0.057 0.943 35 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.137 -4.267 -1.515 6.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.053 4.053 3 C -0.246 4.246 4 C -0.052 4.052 5 C -0.304 4.304 6 C -0.075 4.075 7 C -0.179 4.179 8 N -0.234 5.234 9 N -0.096 5.096 10 C 0.038 3.962 11 C -0.203 4.203 12 C -0.201 4.201 13 C 0.075 3.925 14 C -0.498 4.498 15 H 0.103 0.897 16 C -0.134 4.134 17 N -0.431 5.431 18 Si 0.753 3.247 19 H -0.156 1.156 20 H -0.188 1.188 21 H -0.212 1.212 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.096 0.904 25 H 0.149 0.851 26 H 0.121 0.879 27 H 0.140 0.860 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.125 0.875 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.126 0.874 34 H 0.076 0.924 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.740 -5.416 -1.503 6.752 hybrid contribution 0.101 1.144 -0.407 1.218 sum -3.640 -4.273 -1.910 5.929 Atomic orbital electron populations 1.20778 0.88727 1.03356 1.02846 1.19532 0.97265 0.91696 0.96763 1.20638 0.92627 0.97927 1.13366 1.20365 0.94485 0.95005 0.95372 1.20672 0.92052 0.95426 1.22262 1.20787 0.94849 0.89913 1.01985 1.19653 0.88712 0.98143 1.11441 1.72544 0.89757 1.26171 1.34910 1.46201 1.04943 1.03870 1.54537 1.21590 0.83467 0.92665 0.98503 1.22023 1.03921 0.99267 0.95058 1.21989 1.03928 0.99137 0.95036 1.20052 0.92986 0.83953 0.95467 1.18076 1.00657 1.02540 1.28547 0.89694 1.26247 0.95491 0.92926 0.98749 1.69581 1.33809 1.03608 1.36088 0.86095 0.80566 0.79345 0.78673 1.15627 1.18797 1.21156 0.90426 0.90881 0.90441 0.85104 0.87876 0.86030 0.88117 0.92353 0.87534 0.94019 0.94029 0.87380 0.92378 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.64 9.96 71.23 0.71 -1.93 16 2 C -0.05 -1.85 5.84 -20.14 -0.12 -1.97 16 3 C -0.23 -9.16 9.60 22.37 0.21 -8.95 16 4 C -0.03 -1.55 7.43 22.34 0.17 -1.38 16 5 C -0.30 -15.39 5.21 -18.78 -0.10 -15.49 16 6 C 0.07 3.76 7.51 41.99 0.32 4.07 16 7 C -0.16 -6.78 9.67 22.43 0.22 -6.56 16 8 N -0.40 -20.16 11.37 -48.91 -0.56 -20.72 16 9 N -0.31 -15.01 3.10 -314.17 -0.97 -15.99 16 10 C 0.14 5.18 3.54 44.99 0.16 5.34 16 11 C -0.15 -4.54 9.35 71.98 0.67 -3.87 16 12 C -0.14 -4.54 9.35 71.98 0.67 -3.87 16 13 C 0.20 10.61 5.83 40.50 0.24 10.85 16 14 C -0.46 -24.40 8.97 22.98 0.21 -24.19 16 15 H 0.09 4.58 7.69 -2.91 -0.02 4.56 16 16 C 0.09 4.48 5.40 85.38 0.46 4.94 16 17 N -0.81 -40.20 13.92 21.90 0.30 -39.89 16 18 Si 0.93 42.01 24.38 68.60 1.67 43.68 16 19 H -0.23 -10.04 5.36 99.48 0.53 -9.51 16 20 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 21 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 22 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.07 1.71 8.06 -2.39 -0.02 1.69 16 24 H 0.08 1.76 8.07 -2.39 -0.02 1.74 16 25 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 26 H 0.10 4.84 5.99 -2.91 -0.02 4.82 16 27 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16 28 H 0.10 3.77 6.99 -2.39 -0.02 3.76 16 29 H 0.06 1.92 8.13 -2.39 -0.02 1.90 16 30 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.06 1.93 8.12 -2.38 -0.02 1.91 16 35 H 0.30 13.47 8.29 -92.71 -0.77 12.71 16 Total: -1.00 -62.87 288.15 5.16 -57.70 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.90 Total: 18.22 kcal Atomic # 6 Polarization: -46.83 SS G_CDS: 3.81 Total: -43.01 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -1.22 Total: -76.60 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.67 Total: 43.68 kcal Total: -62.87 5.16 -57.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220192648.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.263 kcal (2) G-P(sol) polarization free energy of solvation -62.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds