Wall clock time and date at job start Mon Mar 30 2020 05:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36191 * 120.17173 * 2 1 4 4 C 1.39083 * 121.80002 * 179.75759 * 3 2 1 5 5 C 1.37801 * 121.26902 * 0.46369 * 4 3 2 6 6 C 1.38984 * 119.37145 * 359.52308 * 5 4 3 7 7 C 1.46091 * 136.61089 * 180.24770 * 6 5 4 8 8 C 1.39040 * 127.45280 * 359.97438 * 7 6 5 9 9 H 1.08007 * 119.99444 * 209.39814 * 8 7 6 10 10 C 1.40362 * 120.00561 * 29.40010 * 8 7 6 11 11 N 1.30685 * 119.99754 * 18.54533 * 10 8 7 12 12 Si 1.86796 * 120.00084 * 198.54858 * 10 8 7 13 13 H 1.48495 * 109.47491 * 89.99707 * 12 10 8 14 14 H 1.48505 * 109.47093 * 209.99753 * 12 10 8 15 15 H 1.48504 * 109.47184 * 329.99686 * 12 10 8 16 16 N 1.37405 * 105.08684 * 180.02562 * 7 6 5 17 17 C 1.46503 * 124.15073 * 180.02562 * 16 7 6 18 18 C 1.53000 * 109.46969 * 120.00187 * 17 16 7 19 19 C 1.52998 * 109.46946 * 239.99933 * 17 16 7 20 20 N 1.28268 * 111.70583 * 0.02562 * 16 7 6 21 21 C 1.32325 * 112.89614 * 0.02562 * 20 16 7 22 22 H 1.08998 * 109.47450 * 270.03018 * 1 2 3 23 23 H 1.09003 * 109.47177 * 30.02729 * 1 2 3 24 24 H 1.09001 * 109.47431 * 150.02319 * 1 2 3 25 25 H 1.07996 * 119.09811 * 359.97111 * 3 2 1 26 26 H 1.08001 * 119.35978 * 180.26359 * 4 3 2 27 27 H 1.08000 * 120.31671 * 179.80493 * 5 4 3 28 28 H 0.97001 * 119.99996 * 180.02562 * 11 10 8 29 29 H 1.09001 * 109.46865 * 359.97438 * 17 16 7 30 30 H 1.08993 * 109.47319 * 59.99946 * 18 17 16 31 31 H 1.09007 * 109.46580 * 180.02562 * 18 17 16 32 32 H 1.09002 * 109.46920 * 299.99599 * 18 17 16 33 33 H 1.08997 * 109.46967 * 179.97438 * 19 17 16 34 34 H 1.08993 * 109.47274 * 300.00013 * 19 17 16 35 35 H 1.09003 * 109.46843 * 59.99945 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1914 1.1774 0.0000 4 6 3.5817 1.2169 0.0050 5 6 4.3302 0.0599 0.0007 6 6 3.6835 -1.1703 0.0012 7 6 4.0778 -2.5770 0.0021 8 6 5.3688 -3.0932 0.0022 9 1 5.5675 -4.0507 -0.4563 10 6 6.4138 -2.3701 0.5983 11 7 6.1455 -1.4181 1.4524 12 14 8.1880 -2.7684 0.1705 13 1 8.6138 -1.9465 -0.9906 14 1 9.0578 -2.4672 1.3358 15 1 8.3029 -4.2084 -0.1738 16 7 2.8969 -3.2795 0.0016 17 6 2.8099 -4.7419 0.0027 18 6 2.0584 -5.2071 1.2517 19 6 2.0608 -5.2092 -1.2468 20 7 1.8799 -2.4978 0.0000 21 6 2.2146 -1.2175 -0.0013 22 1 -0.3634 0.0005 1.0276 23 1 -0.3634 0.8898 -0.5143 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6396 2.1057 -0.0005 26 1 4.0842 2.1729 0.0091 27 1 5.4091 0.1086 0.0015 28 1 6.8677 -0.9181 1.8641 29 1 3.8142 -5.1656 0.0036 30 1 1.0542 -4.7834 1.2504 31 1 1.9941 -6.2953 1.2527 32 1 2.5922 -4.8742 2.1419 33 1 1.9965 -6.2972 -1.2462 34 1 1.0566 -4.7855 -1.2481 35 1 2.5962 -4.8777 -2.1365 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220192728.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:53 Heat of formation + Delta-G solvation = 65.251538 kcal Electronic energy + Delta-G solvation = -17697.033235 eV Core-core repulsion = 15081.494364 eV Total energy + Delta-G solvation = -2615.538871 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.22948 -36.61087 -34.23364 -33.92574 -31.42200 -29.43545 -28.41020 -26.80990 -25.96347 -24.83172 -22.64118 -21.09659 -19.40312 -18.91354 -16.83780 -16.03005 -15.52163 -14.82948 -14.22869 -14.06931 -13.70000 -13.34265 -12.74412 -12.72319 -12.28357 -12.11975 -11.88885 -11.83789 -11.70190 -11.33829 -11.24694 -10.98850 -10.86560 -10.68398 -10.50278 -10.20696 -10.06309 -9.82008 -9.37245 -8.46407 -8.20218 -7.21448 -7.02616 -6.33707 -4.43887 2.24272 2.87394 2.93909 2.96033 3.28320 3.68411 3.92326 3.96432 4.76186 5.22645 5.40470 5.54962 5.62641 5.83947 5.91597 6.05774 6.09643 6.16473 6.20938 6.27707 6.35024 6.50001 6.55507 6.63768 6.64681 6.73418 6.86158 6.97032 6.98741 7.20495 7.43884 7.64068 7.92435 8.05876 8.08348 8.34124 8.39785 8.61586 8.83248 9.89242 10.04727 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.016903 B = 0.011405 C = 0.007303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.157221 B = 2454.382364 C = 3832.934287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.135 4.135 3 C -0.075 4.075 4 C -0.260 4.260 5 C 0.035 3.965 6 C -0.236 4.236 7 C 0.253 3.747 8 C -0.447 4.447 9 H 0.088 0.912 10 C 0.085 3.915 11 N -0.756 5.756 12 Si 0.918 3.082 13 H -0.263 1.263 14 H -0.274 1.274 15 H -0.260 1.260 16 N -0.327 5.327 17 C 0.161 3.839 18 C -0.152 4.152 19 C -0.156 4.156 20 N -0.408 5.408 21 C 0.108 3.892 22 H 0.046 0.954 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.094 0.906 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.289 0.711 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.758 -3.370 -1.476 3.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.139 4.139 3 C -0.096 4.096 4 C -0.281 4.281 5 C 0.015 3.985 6 C -0.245 4.245 7 C 0.128 3.872 8 C -0.482 4.482 9 H 0.106 0.894 10 C -0.140 4.140 11 N -0.380 5.380 12 Si 0.741 3.259 13 H -0.188 1.188 14 H -0.199 1.199 15 H -0.183 1.183 16 N -0.110 5.110 17 C 0.059 3.941 18 C -0.210 4.210 19 C -0.214 4.214 20 N -0.237 5.237 21 C -0.043 4.043 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.122 0.878 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.755 -4.128 -1.311 4.673 hybrid contribution 1.624 0.431 -0.012 1.680 sum -0.131 -3.697 -1.324 3.929 Atomic orbital electron populations 1.20394 0.93147 1.00532 1.00137 1.18168 0.93604 0.90008 1.12077 1.19978 0.94088 0.95277 1.00284 1.20234 0.93469 0.96479 1.17924 1.20089 0.97857 0.90196 0.90368 1.20089 0.92717 0.91886 1.19764 1.19821 0.86548 0.88916 0.91931 1.18393 0.89777 1.06305 1.33753 0.89375 1.25885 1.01967 0.93651 0.92483 1.69819 1.36114 1.15460 1.16568 0.86140 0.80071 0.80342 0.79318 1.18766 1.19886 1.18345 1.45496 1.02738 1.04952 1.57778 1.20973 1.00655 0.76773 0.95729 1.22025 1.01537 1.00070 0.97394 1.22091 1.01715 1.00261 0.97338 1.72562 1.14417 1.00492 1.36240 1.20074 0.92634 0.90701 1.00920 0.93516 0.93611 0.92725 0.88761 0.88993 0.87790 0.89936 0.88534 0.91607 0.92049 0.92360 0.92009 0.91512 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.67 10.02 36.00 0.36 -1.31 16 2 C -0.13 -3.19 5.90 -104.38 -0.62 -3.80 16 3 C -0.07 -1.67 9.54 -40.00 -0.38 -2.05 16 4 C -0.26 -6.04 9.99 -39.43 -0.39 -6.43 16 5 C 0.03 0.88 8.84 -39.46 -0.35 0.53 16 6 C -0.24 -6.39 5.97 -102.94 -0.61 -7.01 16 7 C 0.25 6.61 6.56 -81.92 -0.54 6.07 16 8 C -0.45 -10.88 8.62 -38.49 -0.33 -11.21 16 9 H 0.09 1.98 7.26 -52.48 -0.38 1.60 16 10 C 0.09 1.97 5.11 -17.24 -0.09 1.88 16 11 N -0.76 -18.39 10.17 55.57 0.56 -17.83 16 12 Si 0.92 17.05 29.60 -169.99 -5.03 12.02 16 13 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 14 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 15 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 16 N -0.33 -7.89 3.10 -50.66 -0.16 -8.05 16 17 C 0.16 3.07 3.54 -67.93 -0.24 2.83 16 18 C -0.15 -2.58 9.35 37.16 0.35 -2.24 16 19 C -0.16 -2.56 9.35 37.16 0.35 -2.21 16 20 N -0.41 -10.46 11.37 33.19 0.38 -10.08 16 21 C 0.11 2.85 7.20 -83.14 -0.60 2.25 16 22 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.04 0.77 8.08 -51.93 -0.42 0.35 16 24 H 0.05 1.09 8.10 -51.93 -0.42 0.67 16 25 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 26 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 27 H 0.10 2.60 6.46 -52.49 -0.34 2.26 16 28 H 0.29 6.35 8.29 -40.82 -0.34 6.01 16 29 H 0.10 1.76 6.82 -51.93 -0.35 1.41 16 30 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 1.16 8.12 -51.93 -0.42 0.74 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 293.63 15.07 4.42 4.42 Total: -1.00 -28.82 293.63 -7.77 -36.59 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -4.85 Total: 5.62 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -3.10 Total: -22.70 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.79 Total: -35.96 kcal Atomic # 14 Polarization: 17.05 SS G_CDS: -5.03 Total: 12.02 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -28.82 -7.77 -36.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220192728.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.837 kcal (2) G-P(sol) polarization free energy of solvation -28.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds