Wall clock time and date at job start Mon Mar 30 2020 05:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36191 * 120.17173 * 2 1 4 4 C 1.39083 * 121.80002 * 179.75759 * 3 2 1 5 5 C 1.37801 * 121.26902 * 0.46369 * 4 3 2 6 6 C 1.38984 * 119.37145 * 359.52308 * 5 4 3 7 7 C 1.46091 * 136.61089 * 180.24770 * 6 5 4 8 8 C 1.39040 * 127.45280 * 359.97438 * 7 6 5 9 9 H 1.08007 * 119.99444 * 209.39814 * 8 7 6 10 10 C 1.40362 * 120.00561 * 29.40010 * 8 7 6 11 11 N 1.30685 * 119.99754 * 18.54533 * 10 8 7 12 12 Si 1.86796 * 120.00084 * 198.54858 * 10 8 7 13 13 H 1.48495 * 109.47491 * 89.99707 * 12 10 8 14 14 H 1.48505 * 109.47093 * 209.99753 * 12 10 8 15 15 H 1.48504 * 109.47184 * 329.99686 * 12 10 8 16 16 N 1.37405 * 105.08684 * 180.02562 * 7 6 5 17 17 C 1.46503 * 124.15073 * 180.02562 * 16 7 6 18 18 C 1.53000 * 109.46969 * 120.00187 * 17 16 7 19 19 C 1.52998 * 109.46946 * 239.99933 * 17 16 7 20 20 N 1.28268 * 111.70583 * 0.02562 * 16 7 6 21 21 C 1.32325 * 112.89614 * 0.02562 * 20 16 7 22 22 H 1.08998 * 109.47450 * 270.03018 * 1 2 3 23 23 H 1.09003 * 109.47177 * 30.02729 * 1 2 3 24 24 H 1.09001 * 109.47431 * 150.02319 * 1 2 3 25 25 H 1.07996 * 119.09811 * 359.97111 * 3 2 1 26 26 H 1.08001 * 119.35978 * 180.26359 * 4 3 2 27 27 H 1.08000 * 120.31671 * 179.80493 * 5 4 3 28 28 H 0.97001 * 119.99996 * 180.02562 * 11 10 8 29 29 H 1.09001 * 109.46865 * 359.97438 * 17 16 7 30 30 H 1.08993 * 109.47319 * 59.99946 * 18 17 16 31 31 H 1.09007 * 109.46580 * 180.02562 * 18 17 16 32 32 H 1.09002 * 109.46920 * 299.99599 * 18 17 16 33 33 H 1.08997 * 109.46967 * 179.97438 * 19 17 16 34 34 H 1.08993 * 109.47274 * 300.00013 * 19 17 16 35 35 H 1.09003 * 109.46843 * 59.99945 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1914 1.1774 0.0000 4 6 3.5817 1.2169 0.0050 5 6 4.3302 0.0599 0.0007 6 6 3.6835 -1.1703 0.0012 7 6 4.0778 -2.5770 0.0021 8 6 5.3688 -3.0932 0.0022 9 1 5.5675 -4.0507 -0.4563 10 6 6.4138 -2.3701 0.5983 11 7 6.1455 -1.4181 1.4524 12 14 8.1880 -2.7684 0.1705 13 1 8.6138 -1.9465 -0.9906 14 1 9.0578 -2.4672 1.3358 15 1 8.3029 -4.2084 -0.1738 16 7 2.8969 -3.2795 0.0016 17 6 2.8099 -4.7419 0.0027 18 6 2.0584 -5.2071 1.2517 19 6 2.0608 -5.2092 -1.2468 20 7 1.8799 -2.4978 0.0000 21 6 2.2146 -1.2175 -0.0013 22 1 -0.3634 0.0005 1.0276 23 1 -0.3634 0.8898 -0.5143 24 1 -0.3634 -0.8902 -0.5135 25 1 1.6396 2.1057 -0.0005 26 1 4.0842 2.1729 0.0091 27 1 5.4091 0.1086 0.0015 28 1 6.8677 -0.9181 1.8641 29 1 3.8142 -5.1656 0.0036 30 1 1.0542 -4.7834 1.2504 31 1 1.9941 -6.2953 1.2527 32 1 2.5922 -4.8742 2.1419 33 1 1.9965 -6.2972 -1.2462 34 1 1.0566 -4.7855 -1.2481 35 1 2.5962 -4.8777 -2.1365 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220192728.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:52 Heat of formation + Delta-G solvation = 50.218155 kcal Electronic energy + Delta-G solvation = -17697.685131 eV Core-core repulsion = 15081.494364 eV Total energy + Delta-G solvation = -2616.190767 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.04786 -38.35849 -35.99484 -35.50995 -33.19400 -31.24771 -30.18645 -28.16431 -27.70603 -26.63229 -24.33185 -22.92654 -21.06018 -20.72012 -18.64533 -17.79855 -17.24011 -16.47989 -15.96741 -15.77241 -15.25068 -14.98474 -14.41763 -14.29620 -14.04392 -13.70403 -13.48202 -13.29454 -13.05523 -12.92225 -12.86823 -12.59277 -12.37373 -12.16327 -12.09725 -11.87343 -11.77993 -11.57074 -11.12711 -10.36030 -10.08030 -9.01624 -8.82051 -8.18816 -6.30003 0.41434 1.28742 1.40357 1.52032 1.54440 2.07743 2.15010 2.32766 2.97957 3.50784 3.72952 4.10075 4.11026 4.24396 4.37921 4.50978 4.68489 4.68990 4.70645 4.78869 4.82457 4.87012 4.96611 5.02594 5.05542 5.13907 5.22270 5.25571 5.29434 5.41908 5.68567 5.83584 6.09319 6.19371 6.26259 6.48104 6.58375 6.77638 7.03128 8.14491 8.19279 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.016903 B = 0.011405 C = 0.007303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.157221 B = 2454.382364 C = 3832.934287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.149 4.149 3 C -0.079 4.079 4 C -0.258 4.258 5 C 0.009 3.991 6 C -0.273 4.273 7 C 0.220 3.780 8 C -0.466 4.466 9 H 0.100 0.900 10 C 0.048 3.952 11 N -0.791 5.791 12 Si 0.993 3.007 13 H -0.263 1.263 14 H -0.266 1.266 15 H -0.248 1.248 16 N -0.330 5.330 17 C 0.144 3.856 18 C -0.142 4.142 19 C -0.144 4.144 20 N -0.417 5.417 21 C 0.072 3.928 22 H 0.055 0.945 23 H 0.077 0.923 24 H 0.044 0.956 25 H 0.134 0.866 26 H 0.118 0.882 27 H 0.098 0.902 28 H 0.296 0.704 29 H 0.102 0.898 30 H 0.051 0.949 31 H 0.106 0.894 32 H 0.036 0.964 33 H 0.105 0.895 34 H 0.052 0.948 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.607 -3.770 -1.784 4.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.153 4.153 3 C -0.100 4.100 4 C -0.279 4.279 5 C -0.011 4.011 6 C -0.282 4.282 7 C 0.095 3.905 8 C -0.501 4.501 9 H 0.118 0.882 10 C -0.175 4.175 11 N -0.415 5.415 12 Si 0.812 3.188 13 H -0.188 1.188 14 H -0.190 1.190 15 H -0.171 1.171 16 N -0.114 5.114 17 C 0.043 3.957 18 C -0.199 4.199 19 C -0.202 4.202 20 N -0.246 5.246 21 C -0.078 4.078 22 H 0.074 0.926 23 H 0.096 0.904 24 H 0.063 0.937 25 H 0.152 0.848 26 H 0.136 0.864 27 H 0.116 0.884 28 H 0.107 0.893 29 H 0.120 0.880 30 H 0.070 0.930 31 H 0.124 0.876 32 H 0.056 0.944 33 H 0.123 0.877 34 H 0.071 0.929 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.634 -4.545 -1.617 5.094 hybrid contribution 1.514 0.577 0.108 1.624 sum -0.120 -3.969 -1.509 4.248 Atomic orbital electron populations 1.20374 0.90416 1.01628 1.01005 1.18757 0.95852 0.89509 1.11197 1.20392 0.93936 0.96492 0.99174 1.20635 0.94280 0.96827 1.16120 1.20217 0.97846 0.90818 0.92196 1.20560 0.93588 0.92980 1.21041 1.20263 0.87804 0.89326 0.93113 1.18751 0.89853 1.07229 1.34304 0.88230 1.26832 1.05994 0.92994 0.91632 1.69882 1.37816 1.16384 1.17407 0.85031 0.74254 0.80538 0.78974 1.18810 1.19048 1.17111 1.45949 1.01955 1.06518 1.56947 1.21462 1.01829 0.74432 0.97956 1.21961 0.99845 1.02754 0.95370 1.22010 1.00016 1.02841 0.95312 1.72470 1.15183 1.00609 1.36387 1.20683 0.93075 0.91875 1.02209 0.92625 0.90382 0.93713 0.84794 0.86367 0.88430 0.89260 0.87999 0.92957 0.87562 0.94448 0.87656 0.92917 0.93821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.92 10.02 71.23 0.71 -2.21 16 2 C -0.15 -7.00 5.90 -19.71 -0.12 -7.12 16 3 C -0.08 -3.40 9.54 22.00 0.21 -3.19 16 4 C -0.26 -11.84 9.99 22.37 0.22 -11.62 16 5 C 0.01 0.47 8.84 22.35 0.20 0.67 16 6 C -0.27 -15.29 5.97 -18.78 -0.11 -15.41 16 7 C 0.22 11.91 6.56 40.50 0.27 12.18 16 8 C -0.47 -23.16 8.62 22.98 0.20 -22.96 16 9 H 0.10 4.51 7.26 -2.91 -0.02 4.49 16 10 C 0.05 2.22 5.11 85.38 0.44 2.65 16 11 N -0.79 -39.36 10.17 21.90 0.22 -39.14 16 12 Si 0.99 34.63 29.60 68.60 2.03 36.66 16 13 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 14 H -0.27 -8.86 7.11 99.48 0.71 -8.15 16 15 H -0.25 -8.11 7.11 99.48 0.71 -7.40 16 16 N -0.33 -16.35 3.10 -314.19 -0.97 -17.33 16 17 C 0.14 5.45 3.54 44.99 0.16 5.61 16 18 C -0.14 -4.69 9.35 71.98 0.67 -4.02 16 19 C -0.14 -4.56 9.35 71.98 0.67 -3.89 16 20 N -0.42 -21.92 11.37 -48.90 -0.56 -22.47 16 21 C 0.07 3.89 7.20 41.99 0.30 4.19 16 22 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.08 2.40 8.08 -2.39 -0.02 2.38 16 24 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 25 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 26 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 27 H 0.10 5.06 6.46 -2.91 -0.02 5.04 16 28 H 0.30 13.24 8.29 -92.71 -0.77 12.48 16 29 H 0.10 3.69 6.82 -2.39 -0.02 3.67 16 30 H 0.05 1.86 8.12 -2.39 -0.02 1.84 16 31 H 0.11 2.52 8.14 -2.38 -0.02 2.50 16 32 H 0.04 1.36 8.14 -2.39 -0.02 1.35 16 33 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.05 1.81 8.12 -2.39 -0.02 1.79 16 35 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -64.72 293.63 5.62 -59.10 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 1.07 Total: 28.28 kcal Atomic # 6 Polarization: -48.93 SS G_CDS: 3.82 Total: -45.10 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -1.31 Total: -78.94 kcal Atomic # 14 Polarization: 34.63 SS G_CDS: 2.03 Total: 36.66 kcal Total: -64.72 5.62 -59.10 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220192728.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.319 kcal (2) G-P(sol) polarization free energy of solvation -64.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds