Wall clock time and date at job start Mon Mar 30 2020 06:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47444 * 2 1 4 4 N 1.46501 * 109.47242 * 120.00096 * 2 1 3 5 5 N 1.39961 * 125.02101 * 299.97306 * 4 2 1 6 6 C 1.32061 * 108.95974 * 180.02562 * 5 4 2 7 7 C 1.41146 * 134.67877 * 179.97438 * 6 5 4 8 8 C 1.35635 * 119.59568 * 180.02562 * 7 6 5 9 9 C 1.39684 * 121.81648 * 0.02562 * 8 7 6 10 10 C 1.35656 * 121.72539 * 0.02562 * 9 8 7 11 11 C 1.41122 * 119.53668 * 359.96454 * 10 9 8 12 12 C 1.33991 * 125.02346 * 119.99950 * 4 2 1 13 13 C 1.50693 * 126.04484 * 359.97438 * 12 4 2 14 14 C 1.50693 * 109.47426 * 90.02626 * 13 12 4 15 15 H 1.08002 * 119.99966 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00288 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99975 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99933 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47326 * 89.99873 * 18 16 14 20 20 H 1.48503 * 109.47158 * 209.99689 * 18 16 14 21 21 H 1.48497 * 109.47453 * 329.99982 * 18 16 14 22 22 H 1.08997 * 109.47664 * 60.00110 * 1 2 3 23 23 H 1.09006 * 109.47487 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47036 * 300.00203 * 1 2 3 25 25 H 1.09000 * 109.47036 * 239.99797 * 2 1 3 26 26 H 1.08997 * 109.47266 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47054 * 300.00260 * 3 2 1 28 28 H 1.09000 * 109.47170 * 59.99879 * 3 2 1 29 29 H 1.07998 * 120.20464 * 0.02699 * 7 6 5 30 30 H 1.08006 * 119.09473 * 179.72181 * 8 7 6 31 31 H 1.07998 * 119.13805 * 179.97438 * 9 8 7 32 32 H 1.08004 * 120.22900 * 179.97438 * 10 9 8 33 33 H 1.09004 * 109.46845 * 210.02931 * 13 12 4 34 34 H 1.09004 * 109.47605 * 330.01940 * 13 12 4 35 35 H 0.96999 * 120.00290 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7462 -0.3048 2.5137 6 6 2.3418 -1.1464 3.3390 7 6 2.4279 -1.2664 4.7427 8 6 3.1461 -2.2809 5.2855 9 6 3.8101 -3.2197 4.4924 10 6 3.7710 -3.1642 3.1375 11 6 3.0421 -2.1351 2.5042 12 6 2.7919 -1.7846 1.1905 13 6 3.3004 -2.5047 -0.0317 14 6 4.6302 -1.9250 -0.4394 15 1 5.0637 -1.1156 0.1294 16 6 5.2932 -2.4270 -1.5392 17 7 4.7652 -3.4122 -2.2321 18 14 6.9413 -1.7078 -2.0449 19 1 8.0340 -2.4444 -1.3603 20 1 7.1057 -1.8329 -3.5155 21 1 6.9946 -0.2743 -1.6611 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8932 -0.5139 -0.8900 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.9250 -0.5548 5.3807 30 1 3.2103 -2.3624 6.3605 31 1 4.3700 -4.0099 4.9704 32 1 4.2938 -3.9027 2.5478 33 1 3.4199 -3.5644 0.1944 34 1 2.5867 -2.3856 -0.8469 35 1 5.2317 -3.7657 -3.0056 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220192822.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:34 Heat of formation + Delta-G solvation = 73.177566 kcal Electronic energy + Delta-G solvation = -17384.209992 eV Core-core repulsion = 14769.014819 eV Total energy + Delta-G solvation = -2615.195173 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 3.76 seconds Orbital eigenvalues (eV) -40.67908 -37.05698 -34.40502 -33.65699 -31.68289 -29.58164 -29.04668 -27.06333 -26.79483 -23.94627 -23.06680 -21.20077 -20.41507 -18.63487 -16.57692 -16.45282 -16.06019 -15.13501 -14.59661 -14.38736 -14.08944 -13.71743 -13.24453 -12.84232 -12.52987 -12.26292 -12.11758 -12.04836 -11.80436 -11.40238 -11.18326 -11.16938 -10.86513 -10.77517 -10.69535 -10.59857 -9.98295 -9.78947 -9.50125 -9.17312 -8.61538 -7.97372 -6.84500 -6.22768 -4.30271 1.33869 2.49663 2.98990 3.16496 3.20630 3.27756 3.32499 4.28848 4.52210 4.73857 5.10900 5.11352 5.19208 5.37437 5.43039 5.58866 5.67326 5.72859 5.85701 5.92839 5.98155 6.03287 6.18061 6.20875 6.22983 6.39222 6.47068 6.70356 7.00452 7.14709 7.20634 7.23934 7.37677 7.56769 7.64582 7.70590 8.02731 8.43104 8.73541 9.35541 10.85129 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017469 B = 0.008996 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.469040 B = 3111.628501 C = 4167.905676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.146 3.854 3 C -0.155 4.155 4 N -0.320 5.320 5 N -0.341 5.341 6 C 0.103 3.897 7 C -0.125 4.125 8 C -0.073 4.073 9 C -0.200 4.200 10 C -0.003 4.003 11 C -0.232 4.232 12 C 0.177 3.823 13 C 0.070 3.930 14 C -0.518 4.518 15 H 0.059 0.941 16 C 0.065 3.935 17 N -0.889 5.889 18 Si 0.898 3.102 19 H -0.277 1.277 20 H -0.284 1.284 21 H -0.273 1.273 22 H 0.072 0.928 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.116 0.884 26 H 0.065 0.935 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.121 0.879 33 H 0.051 0.949 34 H 0.036 0.964 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.061 3.645 5.899 8.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.044 3.956 3 C -0.213 4.213 4 N -0.093 5.093 5 N -0.167 5.167 6 C -0.051 4.051 7 C -0.146 4.146 8 C -0.096 4.096 9 C -0.220 4.220 10 C -0.023 4.023 11 C -0.241 4.241 12 C 0.039 3.961 13 C 0.031 3.969 14 C -0.557 4.557 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.725 3.275 19 H -0.203 1.203 20 H -0.210 1.210 21 H -0.198 1.198 22 H 0.091 0.909 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.134 0.866 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.139 0.861 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.894 4.735 5.507 9.353 hybrid contribution 1.458 -0.362 -0.293 1.530 sum -4.436 4.373 5.214 8.123 Atomic orbital electron populations 1.22098 0.93719 1.02761 1.02884 1.21469 0.94959 0.94323 0.84812 1.22048 1.02412 0.94265 1.02539 1.48640 1.35195 1.19634 1.05803 1.77456 1.29169 1.24194 0.85855 1.20895 0.96153 0.93553 0.94520 1.19644 1.04320 1.00715 0.89971 1.20471 0.96034 0.94145 0.98915 1.20275 1.06139 1.02021 0.93540 1.20350 0.93342 0.94556 0.94067 1.19317 1.10635 1.02883 0.91264 1.22463 0.88757 0.87263 0.97662 1.18199 0.96393 0.95673 0.86610 1.20881 1.03329 1.19237 1.12246 0.92279 1.24953 0.98046 0.94806 0.95956 1.69930 1.38821 1.25331 1.18590 0.86478 0.83619 0.79657 0.77700 1.20292 1.20976 1.19757 0.90893 0.92208 0.91422 0.86575 0.91617 0.91030 0.91629 0.86685 0.86810 0.87031 0.86083 0.93077 0.94615 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 9.43 37.15 0.35 -1.86 16 2 C 0.15 2.49 3.57 -67.93 -0.24 2.24 16 3 C -0.15 -2.36 9.43 37.16 0.35 -2.01 16 4 N -0.32 -6.58 3.23 -50.18 -0.16 -6.74 16 5 N -0.34 -7.19 12.34 33.25 0.41 -6.78 16 6 C 0.10 2.15 7.49 -83.06 -0.62 1.52 16 7 C -0.13 -2.20 10.08 -39.41 -0.40 -2.60 16 8 C -0.07 -1.15 9.89 -39.97 -0.40 -1.55 16 9 C -0.20 -3.33 9.90 -39.97 -0.40 -3.73 16 10 C 0.00 -0.05 10.09 -39.41 -0.40 -0.45 16 11 C -0.23 -5.05 6.26 -105.19 -0.66 -5.71 16 12 C 0.18 3.96 6.17 -81.65 -0.50 3.46 16 13 C 0.07 1.69 5.00 -29.04 -0.15 1.54 16 14 C -0.52 -13.61 9.09 -34.44 -0.31 -13.93 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.89 -24.40 13.29 55.43 0.74 -23.67 16 18 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.12 2.07 6.50 -51.93 -0.34 1.74 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 30 H 0.11 1.39 8.06 -52.48 -0.42 0.96 16 31 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.12 2.28 8.06 -52.48 -0.42 1.85 16 33 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.04 0.87 6.98 -51.93 -0.36 0.51 16 35 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 300.33 15.07 4.53 4.53 Total: -1.00 -29.14 300.33 -7.87 -37.01 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.89 Total: 1.55 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -3.47 Total: -21.43 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.98 Total: -37.18 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.14 -7.87 -37.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220192822.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.189 kcal (2) G-P(sol) polarization free energy of solvation -29.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.77 seconds