Wall clock time and date at job start Mon Mar 30 2020 06:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47444 * 2 1 4 4 N 1.46501 * 109.47242 * 120.00096 * 2 1 3 5 5 N 1.39961 * 125.02101 * 299.97306 * 4 2 1 6 6 C 1.32061 * 108.95974 * 180.02562 * 5 4 2 7 7 C 1.41146 * 134.67877 * 179.97438 * 6 5 4 8 8 C 1.35635 * 119.59568 * 180.02562 * 7 6 5 9 9 C 1.39684 * 121.81648 * 0.02562 * 8 7 6 10 10 C 1.35656 * 121.72539 * 0.02562 * 9 8 7 11 11 C 1.41122 * 119.53668 * 359.96454 * 10 9 8 12 12 C 1.33991 * 125.02346 * 119.99950 * 4 2 1 13 13 C 1.50693 * 126.04484 * 359.97438 * 12 4 2 14 14 C 1.50693 * 109.47426 * 90.02626 * 13 12 4 15 15 H 1.08002 * 119.99966 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00288 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99975 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99933 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47326 * 89.99873 * 18 16 14 20 20 H 1.48503 * 109.47158 * 209.99689 * 18 16 14 21 21 H 1.48497 * 109.47453 * 329.99982 * 18 16 14 22 22 H 1.08997 * 109.47664 * 60.00110 * 1 2 3 23 23 H 1.09006 * 109.47487 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47036 * 300.00203 * 1 2 3 25 25 H 1.09000 * 109.47036 * 239.99797 * 2 1 3 26 26 H 1.08997 * 109.47266 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47054 * 300.00260 * 3 2 1 28 28 H 1.09000 * 109.47170 * 59.99879 * 3 2 1 29 29 H 1.07998 * 120.20464 * 0.02699 * 7 6 5 30 30 H 1.08006 * 119.09473 * 179.72181 * 8 7 6 31 31 H 1.07998 * 119.13805 * 179.97438 * 9 8 7 32 32 H 1.08004 * 120.22900 * 179.97438 * 10 9 8 33 33 H 1.09004 * 109.46845 * 210.02931 * 13 12 4 34 34 H 1.09004 * 109.47605 * 330.01940 * 13 12 4 35 35 H 0.96999 * 120.00290 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 7 1.7462 -0.3048 2.5137 6 6 2.3418 -1.1464 3.3390 7 6 2.4279 -1.2664 4.7427 8 6 3.1461 -2.2809 5.2855 9 6 3.8101 -3.2197 4.4924 10 6 3.7710 -3.1642 3.1375 11 6 3.0421 -2.1351 2.5042 12 6 2.7919 -1.7846 1.1905 13 6 3.3004 -2.5047 -0.0317 14 6 4.6302 -1.9250 -0.4394 15 1 5.0637 -1.1156 0.1294 16 6 5.2932 -2.4270 -1.5392 17 7 4.7652 -3.4122 -2.2321 18 14 6.9413 -1.7078 -2.0449 19 1 8.0340 -2.4444 -1.3603 20 1 7.1057 -1.8329 -3.5155 21 1 6.9946 -0.2743 -1.6611 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8932 -0.5139 -0.8900 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.9250 -0.5548 5.3807 30 1 3.2103 -2.3624 6.3605 31 1 4.3700 -4.0099 4.9704 32 1 4.2938 -3.9027 2.5478 33 1 3.4199 -3.5644 0.1944 34 1 2.5867 -2.3856 -0.8469 35 1 5.2317 -3.7657 -3.0056 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220192822.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:33 Heat of formation + Delta-G solvation = 57.961831 kcal Electronic energy + Delta-G solvation = -17384.869795 eV Core-core repulsion = 14769.014819 eV Total energy + Delta-G solvation = -2615.854976 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.21945 -38.45528 -35.74648 -35.61012 -33.39750 -31.14779 -30.55369 -28.54046 -28.25555 -25.57679 -24.80120 -22.68799 -21.79534 -20.19505 -18.62377 -17.90109 -17.56755 -16.76237 -16.19667 -16.03005 -15.41519 -15.08944 -14.69013 -14.42227 -14.16927 -14.04208 -13.68303 -13.20768 -13.17691 -12.88203 -12.81898 -12.67712 -12.43410 -12.41391 -12.12531 -12.06002 -11.75525 -11.72340 -11.05325 -10.82206 -10.66272 -9.43550 -8.45874 -8.19143 -6.41808 -0.14539 1.03245 1.38010 1.39377 1.48244 1.52621 1.61996 2.36558 3.04095 3.06056 3.30690 3.74290 3.92160 3.93148 4.09792 4.23213 4.34581 4.40905 4.58526 4.62903 4.65580 4.73930 4.78216 4.85636 4.94611 5.11556 5.15685 5.16977 5.21171 5.46637 5.62228 5.68615 5.75621 5.85498 5.93357 6.14182 6.19484 6.65386 6.84806 7.27397 8.80943 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017469 B = 0.008996 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.469040 B = 3111.628501 C = 4167.905676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.132 3.868 3 C -0.146 4.146 4 N -0.317 5.317 5 N -0.348 5.348 6 C 0.080 3.920 7 C -0.133 4.133 8 C -0.064 4.064 9 C -0.175 4.175 10 C -0.043 4.043 11 C -0.250 4.250 12 C 0.140 3.860 13 C 0.087 3.913 14 C -0.529 4.529 15 H 0.045 0.955 16 C 0.022 3.978 17 N -0.918 5.918 18 Si 0.960 3.040 19 H -0.273 1.273 20 H -0.274 1.274 21 H -0.271 1.271 22 H 0.107 0.893 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.100 0.900 26 H 0.040 0.960 27 H 0.107 0.893 28 H 0.065 0.935 29 H 0.141 0.859 30 H 0.163 0.837 31 H 0.147 0.853 32 H 0.114 0.886 33 H 0.029 0.971 34 H 0.024 0.976 35 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.894 4.435 7.474 9.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.031 3.969 3 C -0.203 4.203 4 N -0.091 5.091 5 N -0.174 5.174 6 C -0.073 4.073 7 C -0.154 4.154 8 C -0.086 4.086 9 C -0.195 4.195 10 C -0.064 4.064 11 C -0.259 4.259 12 C 0.002 3.998 13 C 0.049 3.951 14 C -0.567 4.567 15 H 0.063 0.937 16 C -0.178 4.178 17 N -0.556 5.556 18 Si 0.784 3.216 19 H -0.198 1.198 20 H -0.199 1.199 21 H -0.196 1.196 22 H 0.126 0.874 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.118 0.882 26 H 0.059 0.941 27 H 0.125 0.875 28 H 0.084 0.916 29 H 0.158 0.842 30 H 0.180 0.820 31 H 0.164 0.836 32 H 0.132 0.868 33 H 0.047 0.953 34 H 0.042 0.958 35 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.733 5.526 7.083 10.657 hybrid contribution 1.380 -0.636 -0.655 1.655 sum -4.354 4.890 6.428 9.175 Atomic orbital electron populations 1.22044 0.91185 1.02617 1.04454 1.21805 0.97010 0.94816 0.83235 1.22007 1.00754 0.93285 1.04269 1.48900 1.34608 1.19153 1.06465 1.77345 1.29450 1.24544 0.86086 1.21464 0.96409 0.93357 0.96040 1.20097 1.04752 1.01932 0.88618 1.20996 0.93935 0.92406 1.01245 1.20769 1.04191 1.02155 0.92368 1.20500 0.95219 0.95012 0.95640 1.19690 1.11065 1.03850 0.91312 1.22163 0.91274 0.88976 0.97395 1.17806 0.95540 0.94543 0.87246 1.21007 1.04335 1.18971 1.12385 0.93666 1.25698 1.01285 0.95030 0.95795 1.70020 1.40257 1.26309 1.19041 0.85523 0.79474 0.78855 0.77715 1.19824 1.19940 1.19577 0.87403 0.93206 0.91611 0.88170 0.94058 0.87467 0.91622 0.84167 0.81978 0.83561 0.86836 0.95318 0.95792 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.43 71.98 0.68 -3.33 16 2 C 0.13 4.58 3.57 44.99 0.16 4.74 16 3 C -0.15 -4.39 9.43 71.98 0.68 -3.72 16 4 N -0.32 -13.48 3.23 -312.67 -1.01 -14.49 16 5 N -0.35 -14.75 12.34 -48.70 -0.60 -15.35 16 6 C 0.08 3.34 7.49 42.16 0.32 3.65 16 7 C -0.13 -4.34 10.08 22.38 0.23 -4.12 16 8 C -0.06 -1.76 9.89 22.02 0.22 -1.54 16 9 C -0.18 -5.38 9.90 22.02 0.22 -5.16 16 10 C -0.04 -1.70 10.09 22.38 0.23 -1.47 16 11 C -0.25 -11.18 6.26 -20.23 -0.13 -11.31 16 12 C 0.14 6.61 6.17 42.23 0.26 6.87 16 13 C 0.09 4.48 5.00 29.10 0.15 4.63 16 14 C -0.53 -28.92 9.09 25.60 0.23 -28.69 16 15 H 0.05 2.55 7.74 -2.91 -0.02 2.52 16 16 C 0.02 1.20 5.46 84.66 0.46 1.66 16 17 N -0.92 -51.57 13.29 21.45 0.28 -51.28 16 18 Si 0.96 42.54 29.54 68.60 2.03 44.57 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 23 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 24 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.10 3.76 6.50 -2.39 -0.02 3.75 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 30 H 0.16 2.96 8.06 -2.91 -0.02 2.93 16 31 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.11 4.47 8.06 -2.91 -0.02 4.44 16 33 H 0.03 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.02 1.25 6.98 -2.39 -0.02 1.24 16 35 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -64.78 300.33 5.46 -59.32 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 1.07 Total: 15.02 kcal Atomic # 6 Polarization: -41.48 SS G_CDS: 3.70 Total: -37.78 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -1.33 Total: -81.13 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -64.78 5.46 -59.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220192822.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.285 kcal (2) G-P(sol) polarization free energy of solvation -64.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds