Wall clock time and date at job start Mon Mar 30 2020 07:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46900 * 109.47058 * 2 1 4 4 C 1.46904 * 111.00303 * 287.64508 * 3 2 1 5 5 C 1.50699 * 109.47556 * 160.05055 * 4 3 2 6 6 H 1.08005 * 119.99912 * 4.83813 * 5 4 3 7 7 C 1.37868 * 120.00292 * 184.83518 * 5 4 3 8 8 N 1.31523 * 120.00052 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00302 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.46708 * 60.00298 * 9 7 5 11 11 H 1.48495 * 109.46987 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46826 * 300.00312 * 9 7 5 13 13 C 1.39026 * 111.00355 * 163.68736 * 3 2 1 14 14 C 1.38885 * 120.17321 * 243.95801 * 13 3 2 15 15 C 1.50693 * 119.96560 * 0.03761 * 14 13 3 16 16 C 1.38021 * 120.07186 * 180.02562 * 14 13 3 17 17 C 1.38570 * 120.42060 * 0.02562 * 16 14 13 18 18 C 1.37799 * 120.34506 * 0.25551 * 17 16 14 19 19 C 1.39730 * 119.92018 * 359.45440 * 18 17 16 20 20 C 1.43200 * 120.20985 * 180.29617 * 19 18 17 21 21 N 3.38154 * 128.96032 * 261.73774 * 2 1 3 22 22 H 1.09002 * 109.46838 * 178.37733 * 1 2 3 23 23 H 1.08992 * 109.47456 * 298.37477 * 1 2 3 24 24 H 1.08999 * 109.47413 * 58.38115 * 1 2 3 25 25 H 1.08999 * 109.47265 * 240.00362 * 2 1 3 26 26 H 1.08997 * 109.47450 * 119.99929 * 2 1 3 27 27 H 1.09005 * 109.46785 * 280.05193 * 4 3 2 28 28 H 1.09001 * 109.47173 * 40.04781 * 4 3 2 29 29 H 0.96993 * 120.00165 * 179.97438 * 8 7 5 30 30 H 1.08993 * 109.47417 * 269.98219 * 15 14 13 31 31 H 1.09009 * 109.47083 * 29.98163 * 15 14 13 32 32 H 1.09003 * 109.47395 * 149.97992 * 15 14 13 33 33 H 1.07997 * 119.78914 * 179.97438 * 16 14 13 34 34 H 1.07994 * 119.83020 * 179.97438 * 17 16 14 35 35 H 1.08001 * 120.04282 * 179.70105 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8032 2.0200 -1.3069 5 6 1.8460 3.5182 -1.1508 6 1 2.0941 3.9547 -0.1945 7 6 1.5685 4.3319 -2.2287 8 7 1.2660 3.8005 -3.3931 9 14 1.6223 6.1891 -2.0354 10 1 2.9847 6.6036 -1.6144 11 1 1.2873 6.8316 -3.3315 12 1 0.6371 6.6084 -1.0063 13 6 3.3601 1.4396 0.3645 14 6 3.7406 2.0924 1.5299 15 6 2.6986 2.7429 2.4027 16 6 5.0721 2.1458 1.8895 17 6 6.0382 1.5512 1.0938 18 6 5.6806 0.9039 -0.0690 19 6 4.3362 0.8359 -0.4437 20 6 3.9570 0.1594 -1.6475 21 7 3.6562 -0.3779 -2.6021 22 1 -0.3633 -1.0273 -0.0291 23 1 -0.3634 0.4883 0.9041 24 1 -0.3634 0.5388 -0.8751 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 2.5847 1.7042 -1.9981 28 1 0.8302 1.7231 -1.6984 29 1 1.0704 4.3729 -4.1513 30 1 2.5542 3.7763 2.0876 31 1 1.7576 2.2003 2.3111 32 1 3.0300 2.7226 3.4409 33 1 5.3629 2.6550 2.7964 34 1 7.0773 1.5991 1.3841 35 1 6.4381 0.4463 -0.6880 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220977339.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:17 Heat of formation + Delta-G solvation = 43.623315 kcal Electronic energy + Delta-G solvation = -17712.277189 eV Core-core repulsion = 15095.800447 eV Total energy + Delta-G solvation = -2616.476741 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.30744 -37.97564 -37.37380 -34.77407 -33.61426 -32.38426 -30.59355 -28.69492 -27.18586 -25.20558 -24.46493 -22.62641 -21.44859 -19.25372 -18.60859 -17.48084 -17.01212 -16.45175 -15.87813 -15.63716 -15.29475 -14.98942 -14.59690 -14.21219 -14.05161 -13.92574 -13.89047 -13.42087 -13.17981 -12.94455 -12.80188 -12.75860 -12.60840 -12.46860 -12.20598 -12.14330 -12.03847 -11.62195 -11.36526 -10.60070 -9.65593 -9.40046 -9.21893 -8.18903 -6.28631 -0.10296 0.50564 1.39882 1.43665 1.50959 1.60955 1.99530 2.39615 2.87227 3.02182 3.09597 3.17186 3.98510 4.06839 4.19936 4.29926 4.48289 4.49906 4.55689 4.64380 4.82601 4.86042 5.00982 5.05604 5.08883 5.15074 5.18224 5.29859 5.43553 5.53069 5.55326 5.65555 5.77415 5.98866 6.01634 6.36482 6.46154 6.64571 6.87112 7.39959 8.91739 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.016983 B = 0.009794 C = 0.008733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.269337 B = 2858.128071 C = 3205.549635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.050 3.950 3 N -0.502 5.502 4 C 0.206 3.794 5 C -0.510 4.510 6 H 0.072 0.928 7 C -0.002 4.002 8 N -0.940 5.940 9 Si 0.966 3.034 10 H -0.264 1.264 11 H -0.290 1.290 12 H -0.262 1.262 13 C 0.146 3.854 14 C -0.081 4.081 15 C -0.097 4.097 16 C -0.077 4.077 17 C -0.119 4.119 18 C -0.072 4.072 19 C -0.100 4.100 20 C 0.276 3.724 21 N -0.476 5.476 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.028 0.972 25 H 0.008 0.992 26 H 0.090 0.910 27 H -0.023 1.023 28 H 0.004 0.996 29 H 0.261 0.739 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.168 0.832 34 H 0.172 0.828 35 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.329 -3.325 15.036 17.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.077 4.077 3 N -0.223 5.223 4 C 0.081 3.919 5 C -0.549 4.549 6 H 0.090 0.910 7 C -0.199 4.199 8 N -0.581 5.581 9 Si 0.791 3.209 10 H -0.189 1.189 11 H -0.216 1.216 12 H -0.187 1.187 13 C 0.048 3.952 14 C -0.082 4.082 15 C -0.153 4.153 16 C -0.095 4.095 17 C -0.136 4.136 18 C -0.093 4.093 19 C -0.106 4.106 20 C -0.037 4.037 21 N -0.153 5.153 22 H 0.095 0.905 23 H 0.091 0.909 24 H 0.047 0.953 25 H 0.026 0.974 26 H 0.108 0.892 27 H -0.006 1.006 28 H 0.022 0.978 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.185 0.815 34 H 0.190 0.810 35 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.502 -3.873 13.716 16.106 hybrid contribution 0.025 0.487 -1.406 1.488 sum 7.527 -3.385 12.310 14.821 Atomic orbital electron populations 1.21681 0.93807 1.01762 1.01970 1.22215 0.97369 0.88163 0.99936 1.59673 1.14398 1.16270 1.31969 1.19649 0.94288 0.94466 0.83477 1.21422 1.45721 0.91140 0.96594 0.90971 1.25937 0.95050 1.04214 0.94711 1.70127 1.48884 1.37217 1.01874 0.85471 0.79287 0.78891 0.77275 1.18896 1.21570 1.18707 1.19032 0.87739 0.94558 0.93826 1.20062 0.96443 0.97456 0.94193 1.20608 0.97165 0.99683 0.97880 1.21633 0.90603 0.96763 1.00540 1.21410 1.01577 0.97366 0.93269 1.21285 0.92031 0.98238 0.97763 1.17179 0.97023 1.05237 0.91192 1.26037 0.92165 0.92265 0.93189 1.81146 1.08894 1.13163 1.12058 0.90494 0.90882 0.95275 0.97358 0.89206 1.00565 0.97812 0.93037 0.92356 0.91860 0.89046 0.81454 0.81043 0.83886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 10.00 71.98 0.72 -3.97 16 2 C 0.05 1.88 5.08 86.30 0.44 2.32 16 3 N -0.50 -21.42 3.28 -698.78 -2.30 -23.71 16 4 C 0.21 11.14 4.23 85.56 0.36 11.51 16 5 C -0.51 -28.79 8.97 25.60 0.23 -28.56 16 6 H 0.07 3.87 7.57 -2.91 -0.02 3.85 16 7 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 8 N -0.94 -58.81 13.29 21.45 0.28 -58.52 16 9 Si 0.97 44.60 29.54 68.60 2.03 46.62 16 10 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 11 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 12 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 13 C 0.15 5.48 4.22 38.67 0.16 5.64 16 14 C -0.08 -2.39 5.89 -19.76 -0.12 -2.50 16 15 C -0.10 -2.59 9.76 71.23 0.70 -1.90 16 16 C -0.08 -1.62 9.68 22.30 0.22 -1.41 16 17 C -0.12 -2.36 10.02 22.24 0.22 -2.13 16 18 C -0.07 -1.93 9.75 22.53 0.22 -1.71 16 19 C -0.10 -3.68 5.45 -21.15 -0.12 -3.80 16 20 C 0.28 11.93 10.07 88.33 0.89 12.82 16 21 N -0.48 -22.54 18.04 19.00 0.34 -22.20 16 22 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 23 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 24 H 0.03 1.19 6.52 -2.39 -0.02 1.18 16 25 H 0.01 0.35 5.78 -2.39 -0.01 0.33 16 26 H 0.09 2.87 7.97 -2.39 -0.02 2.85 16 27 H -0.02 -1.37 4.94 -2.38 -0.01 -1.38 16 28 H 0.00 0.23 6.25 -2.39 -0.01 0.22 16 29 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 30 H 0.06 1.73 7.90 -2.39 -0.02 1.71 16 31 H 0.06 1.90 7.46 -2.38 -0.02 1.88 16 32 H 0.09 1.69 8.08 -2.39 -0.02 1.67 16 33 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 35 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -72.54 295.29 5.83 -66.71 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 1.09 Total: 4.44 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 4.39 Total: -13.33 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -1.67 Total: -104.44 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -72.54 5.83 -66.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220977339.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.329 kcal (2) G-P(sol) polarization free energy of solvation -72.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds