Wall clock time and date at job start Mon Mar 30 2020 05:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38066 * 119.96401 * 2 1 4 4 C 1.38519 * 120.42187 * 180.30120 * 3 2 1 5 5 C 1.37836 * 120.34300 * 359.44015 * 4 3 2 6 6 C 1.39692 * 119.92412 * 0.28065 * 5 4 3 7 7 C 1.43197 * 120.20832 * 180.02562 * 6 5 4 8 8 N 4.81469 * 134.94955 * 179.73894 * 2 1 3 9 9 C 1.38842 * 119.96569 * 179.74135 * 2 1 3 10 10 N 1.39027 * 120.17234 * 0.02562 * 9 2 1 11 11 C 1.46900 * 111.00512 * 116.01993 * 10 9 2 12 12 C 1.46907 * 110.99992 * 239.97519 * 10 9 2 13 13 H 1.09004 * 109.46455 * 299.99984 * 12 10 9 14 14 C 1.53000 * 109.46976 * 59.99365 * 12 10 9 15 15 C 1.50698 * 109.47512 * 179.97438 * 12 10 9 16 16 H 1.08005 * 119.99838 * 359.97438 * 15 12 10 17 17 C 1.37873 * 119.99907 * 180.02562 * 15 12 10 18 18 N 1.31518 * 119.99451 * 179.97438 * 17 15 12 19 19 Si 1.86795 * 120.00211 * 359.97438 * 17 15 12 20 20 H 1.48498 * 109.46953 * 90.00444 * 19 17 15 21 21 H 1.48501 * 109.47021 * 210.00351 * 19 17 15 22 22 H 1.48498 * 109.47071 * 330.00322 * 19 17 15 23 23 H 1.09004 * 109.47658 * 270.25261 * 1 2 3 24 24 H 1.09000 * 109.47909 * 30.25646 * 1 2 3 25 25 H 1.09001 * 109.47138 * 150.25477 * 1 2 3 26 26 H 1.08000 * 119.78662 * 0.04130 * 3 2 1 27 27 H 1.08002 * 119.83129 * 179.72259 * 4 3 2 28 28 H 1.08003 * 120.03949 * 180.29936 * 5 4 3 29 29 H 1.08992 * 109.46914 * 59.99652 * 11 10 9 30 30 H 1.09001 * 109.47057 * 180.02562 * 11 10 9 31 31 H 1.09003 * 109.46561 * 299.99744 * 11 10 9 32 32 H 1.08994 * 109.47451 * 300.00018 * 14 12 10 33 33 H 1.09004 * 109.47023 * 60.00967 * 14 12 10 34 34 H 1.09004 * 109.46598 * 180.02562 * 14 12 10 35 35 H 0.97006 * 119.99619 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1965 1.1961 0.0000 4 6 3.5817 1.2072 -0.0063 5 6 4.2875 0.0233 -0.0010 6 6 3.6044 -1.1952 0.0049 7 6 4.3316 -2.4288 0.0109 8 7 4.9084 -3.4075 0.0155 9 6 2.2004 -1.2028 0.0054 10 7 1.5082 -2.4085 0.0103 11 6 1.7682 -3.1700 -1.2187 12 6 1.8408 -3.2016 1.2013 13 1 2.9102 -3.4125 1.2103 14 6 1.4654 -2.4152 2.4589 15 6 1.0728 -4.4979 1.1722 16 1 0.4042 -4.7111 0.3512 17 6 1.2230 -5.4112 2.1941 18 7 0.5524 -6.5423 2.1688 19 14 2.3789 -5.0422 3.6143 20 1 1.6341 -4.3369 4.6881 21 1 2.9300 -6.3140 4.1472 22 1 3.4913 -4.1823 3.1365 23 1 -0.3634 0.0045 1.0277 24 1 -0.3635 0.8876 -0.5178 25 1 -0.3633 -0.8923 -0.5099 26 1 1.6525 2.1291 0.0007 27 1 4.1114 2.1484 -0.0108 28 1 5.3674 0.0377 -0.0010 29 1 2.8349 -3.3797 -1.2973 30 1 1.2142 -4.1082 -1.1889 31 1 1.4480 -2.5866 -2.0820 32 1 2.0206 -1.4775 2.4803 33 1 0.3960 -2.2043 2.4499 34 1 1.7126 -3.0036 3.3426 35 1 0.6577 -7.1848 2.8879 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220978110.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:41 Heat of formation + Delta-G solvation = 57.738997 kcal Electronic energy + Delta-G solvation = -17931.223194 eV Core-core repulsion = 15315.358555 eV Total energy + Delta-G solvation = -2615.864639 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.48708 -38.15106 -37.47707 -34.89338 -33.63581 -32.39309 -30.97524 -28.04674 -27.09429 -26.15375 -24.68958 -22.68666 -21.31380 -19.24610 -18.99303 -17.30234 -17.16082 -16.83513 -15.88065 -15.48506 -15.39720 -14.98089 -14.63682 -14.53436 -14.04618 -14.01628 -13.95337 -13.79504 -13.59256 -13.08208 -12.82259 -12.76478 -12.53363 -12.42305 -12.24855 -12.14470 -12.02357 -11.57599 -11.20674 -10.81797 -9.72370 -9.44472 -9.28566 -8.37373 -6.38354 -0.17177 0.43058 1.15694 1.24373 1.30607 1.58679 1.95169 2.20674 2.86672 2.91148 2.95068 3.03971 3.92379 4.17372 4.23398 4.40344 4.45768 4.47591 4.48848 4.57908 4.64954 4.78729 4.85545 4.93595 5.03297 5.06757 5.07842 5.31041 5.39909 5.45629 5.52684 5.56949 5.72127 5.88029 5.98063 6.20620 6.42352 6.65793 6.72860 7.24876 8.78668 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.025606 B = 0.009159 C = 0.008374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.240563 B = 3056.304984 C = 3342.842542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.075 4.075 3 C -0.072 4.072 4 C -0.113 4.113 5 C -0.068 4.068 6 C -0.098 4.098 7 C 0.270 3.730 8 N -0.472 5.472 9 C 0.127 3.873 10 N -0.495 5.495 11 C 0.041 3.959 12 C 0.182 3.818 13 H -0.004 1.004 14 C -0.137 4.137 15 C -0.503 4.503 16 H 0.052 0.948 17 C 0.022 3.978 18 N -0.940 5.940 19 Si 0.935 3.065 20 H -0.253 1.253 21 H -0.299 1.299 22 H -0.272 1.272 23 H 0.067 0.933 24 H 0.091 0.909 25 H 0.058 0.942 26 H 0.170 0.830 27 H 0.174 0.826 28 H 0.145 0.855 29 H 0.008 0.992 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.030 0.970 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.574 21.766 -4.016 22.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.076 4.076 3 C -0.090 4.090 4 C -0.131 4.131 5 C -0.089 4.089 6 C -0.103 4.103 7 C -0.043 4.043 8 N -0.149 5.149 9 C 0.030 3.970 10 N -0.216 5.216 11 C -0.106 4.106 12 C 0.075 3.925 13 H 0.013 0.987 14 C -0.194 4.194 15 C -0.541 4.541 16 H 0.070 0.930 17 C -0.176 4.176 18 N -0.581 5.581 19 Si 0.763 3.237 20 H -0.179 1.179 21 H -0.227 1.227 22 H -0.198 1.198 23 H 0.086 0.914 24 H 0.110 0.890 25 H 0.077 0.923 26 H 0.188 0.812 27 H 0.191 0.809 28 H 0.163 0.837 29 H 0.026 0.974 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.914 20.153 -3.904 20.898 hybrid contribution 1.083 -1.106 0.730 1.711 sum 4.996 19.048 -3.174 19.946 Atomic orbital electron populations 1.20657 0.89386 1.03225 1.02648 1.20048 0.97586 0.90601 0.99407 1.21661 0.94558 0.97705 0.95125 1.21461 0.94128 0.98173 0.99289 1.21320 1.00918 0.89868 0.96749 1.17172 0.93148 0.87687 1.12343 1.26110 0.92509 0.93141 0.92519 1.81223 1.11921 1.11014 1.10756 1.19169 0.88005 0.92645 0.97203 1.59443 1.55882 1.03301 1.02957 1.22307 0.98098 0.98833 0.91363 1.19728 0.93794 0.91378 0.87558 0.98692 1.22011 1.02390 0.98496 0.96550 1.21159 1.24933 1.00474 1.07549 0.92977 1.25570 0.96819 0.94820 1.00440 1.69993 1.43714 1.09809 1.34561 0.86071 0.80050 0.76517 0.81035 1.17867 1.22683 1.19776 0.91408 0.89019 0.92336 0.81225 0.80890 0.83687 0.97386 0.92107 0.89656 0.92564 0.91445 0.95126 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.28 9.76 71.23 0.70 -1.58 16 2 C -0.08 -1.81 5.89 -19.76 -0.12 -1.93 16 3 C -0.07 -1.11 9.68 22.30 0.22 -0.89 16 4 C -0.11 -1.61 10.02 22.24 0.22 -1.39 16 5 C -0.07 -1.43 9.75 22.53 0.22 -1.21 16 6 C -0.10 -3.07 5.51 -21.16 -0.12 -3.19 16 7 C 0.27 10.67 9.99 88.33 0.88 11.55 16 8 N -0.47 -21.32 17.91 19.00 0.34 -20.98 16 9 C 0.13 4.12 3.29 38.67 0.13 4.25 16 10 N -0.50 -20.07 3.53 -699.42 -2.47 -22.54 16 11 C 0.04 1.66 9.00 127.69 1.15 2.81 16 12 C 0.18 8.79 1.33 44.17 0.06 8.85 16 13 H 0.00 -0.22 3.96 -2.39 -0.01 -0.23 16 14 C -0.14 -5.94 8.55 71.98 0.62 -5.33 16 15 C -0.50 -29.22 8.46 25.60 0.22 -29.01 16 16 H 0.05 3.31 6.65 -2.91 -0.02 3.29 16 17 C 0.02 1.29 5.45 84.65 0.46 1.75 16 18 N -0.94 -60.00 13.96 21.45 0.30 -59.70 16 19 Si 0.93 47.98 24.37 68.60 1.67 49.66 16 20 H -0.25 -11.95 6.87 99.48 0.68 -11.26 16 21 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 22 H -0.27 -13.98 6.53 99.48 0.65 -13.33 16 23 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 24 H 0.09 1.36 8.09 -2.39 -0.02 1.34 16 25 H 0.06 1.61 7.46 -2.39 -0.02 1.60 16 26 H 0.17 1.31 8.06 -2.91 -0.02 1.28 16 27 H 0.17 1.05 8.06 -2.91 -0.02 1.02 16 28 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 29 H 0.01 0.33 5.41 -2.39 -0.01 0.32 16 30 H 0.06 2.82 6.10 -2.39 -0.01 2.81 16 31 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.06 2.10 7.22 -2.39 -0.02 2.08 16 33 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.03 1.39 3.27 -2.39 -0.01 1.38 16 35 H 0.27 15.99 8.31 -92.70 -0.77 15.22 16 Total: -1.00 -73.92 282.02 5.49 -68.42 By element: Atomic # 1 Polarization: -0.57 SS G_CDS: 1.02 Total: 0.45 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 4.63 Total: -15.31 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -1.83 Total: -103.23 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 1.67 Total: 49.66 kcal Total: -73.92 5.49 -68.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220978110.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.164 kcal (2) G-P(sol) polarization free energy of solvation -73.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds