Wall clock time and date at job start Mon Mar 30 2020 05:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38066 * 119.96571 * 2 1 4 4 C 1.38525 * 120.42374 * 179.97438 * 3 2 1 5 5 C 1.37836 * 120.34609 * 359.97438 * 4 3 2 6 6 C 1.39690 * 119.91889 * 359.97438 * 5 4 3 7 7 C 1.43201 * 120.20702 * 179.97438 * 6 5 4 8 8 N 4.81468 * 134.94955 * 179.97438 * 2 1 3 9 9 C 1.38842 * 119.96950 * 179.97438 * 2 1 3 10 10 N 1.39038 * 120.16758 * 0.02562 * 9 2 1 11 11 C 1.46890 * 110.99987 * 243.95131 * 10 9 2 12 12 C 1.46907 * 110.99660 * 119.99706 * 10 9 2 13 13 H 1.09001 * 109.46579 * 60.00156 * 12 10 9 14 14 C 1.52998 * 109.47368 * 299.99958 * 12 10 9 15 15 C 1.50699 * 109.46772 * 179.97438 * 12 10 9 16 16 H 1.07999 * 120.00226 * 0.02562 * 15 12 10 17 17 C 1.37878 * 119.99752 * 180.02562 * 15 12 10 18 18 N 1.31516 * 120.00178 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 120.00013 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.46856 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47494 * 120.00012 * 19 17 15 22 22 H 1.48504 * 109.46703 * 240.00083 * 19 17 15 23 23 H 1.08997 * 109.47202 * 90.00097 * 1 2 3 24 24 H 1.09002 * 109.46500 * 210.00441 * 1 2 3 25 25 H 1.09003 * 109.46887 * 329.99778 * 1 2 3 26 26 H 1.08005 * 119.78503 * 0.25161 * 3 2 1 27 27 H 1.07994 * 119.82390 * 180.02562 * 4 3 2 28 28 H 1.07995 * 120.04086 * 180.02562 * 5 4 3 29 29 H 1.08996 * 109.47522 * 60.00530 * 11 10 9 30 30 H 1.09005 * 109.47220 * 180.02562 * 11 10 9 31 31 H 1.09000 * 109.47736 * 300.00058 * 11 10 9 32 32 H 1.08997 * 109.47084 * 180.02562 * 14 12 10 33 33 H 1.09004 * 109.47213 * 300.00420 * 14 12 10 34 34 H 1.09005 * 109.46828 * 59.99678 * 14 12 10 35 35 H 0.96993 * 119.99848 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1961 0.0000 4 6 3.5818 1.2072 0.0005 5 6 4.2877 0.0233 0.0016 6 6 3.6045 -1.1952 0.0027 7 6 4.3317 -2.4289 0.0033 8 7 4.9085 -3.4075 0.0015 9 6 2.2005 -1.2028 0.0005 10 7 1.5082 -2.4085 0.0005 11 6 1.7679 -3.1646 1.2328 12 6 1.8412 -3.2067 -1.1870 13 1 2.9106 -3.4177 -1.1947 14 6 1.4663 -2.4258 -2.4480 15 6 1.0742 -4.5034 -1.1518 16 1 0.4058 -4.7134 -0.3299 17 6 1.2256 -5.4217 -2.1691 18 7 2.0391 -5.1658 -3.1703 19 14 0.2743 -7.0288 -2.1260 20 1 -0.5666 -7.0735 -0.9028 21 1 -0.5933 -7.1228 -3.3274 22 1 1.2271 -8.1678 -2.1130 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3632 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6525 2.1291 0.0041 27 1 4.1114 2.1484 0.0009 28 1 5.3675 0.0377 0.0024 29 1 1.4474 -2.5778 2.0936 30 1 1.2146 -4.1035 1.2065 31 1 2.8346 -3.3741 1.3128 32 1 1.7130 -3.0182 -3.3291 33 1 0.3969 -2.2147 -2.4402 34 1 2.0214 -1.4880 -2.4731 35 1 2.1459 -5.8120 -3.8857 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220978181.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:46 Heat of formation + Delta-G solvation = 69.951294 kcal Electronic energy + Delta-G solvation = -17838.563130 eV Core-core repulsion = 15223.228055 eV Total energy + Delta-G solvation = -2615.335074 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.03608 -36.60293 -35.73189 -32.96562 -32.40991 -30.01439 -29.13107 -26.72392 -25.38538 -24.40849 -23.13916 -21.23349 -19.73769 -17.89082 -16.58566 -15.80665 -15.41309 -15.09062 -14.25805 -14.00558 -13.61605 -13.31467 -13.09283 -12.84989 -12.65435 -12.36425 -12.10192 -11.84636 -11.65195 -11.44367 -11.19974 -11.09637 -11.07105 -10.81225 -10.66695 -10.17668 -10.16086 -10.04758 -8.99605 -8.51815 -8.46786 -8.19644 -7.46026 -6.03781 -4.08815 1.10512 1.58759 3.23348 3.28834 3.36388 3.37438 3.40088 4.18935 4.36199 4.38354 4.72735 5.07344 5.10304 5.28750 5.46705 5.57288 5.70907 5.90386 6.03349 6.12245 6.13355 6.18385 6.46794 6.55131 6.58146 6.67047 6.78940 6.86401 6.93941 7.02322 7.14397 7.39734 7.70733 7.78716 7.99756 8.04904 8.24755 8.53522 8.94767 9.55686 11.03124 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028353 B = 0.008098 C = 0.007305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.328648 B = 3457.003891 C = 3831.829213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.073 4.073 3 C -0.094 4.094 4 C -0.137 4.137 5 C -0.075 4.075 6 C -0.066 4.066 7 C 0.255 3.745 8 N -0.411 5.411 9 C 0.170 3.830 10 N -0.509 5.509 11 C 0.035 3.965 12 C 0.207 3.793 13 H 0.018 0.982 14 C -0.132 4.132 15 C -0.507 4.507 16 H 0.065 0.935 17 C 0.061 3.939 18 N -0.889 5.889 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.285 1.285 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.054 0.946 26 H 0.125 0.875 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.019 0.981 32 H 0.086 0.914 33 H 0.036 0.964 34 H 0.007 0.993 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.348 13.043 6.187 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.074 4.074 3 C -0.113 4.113 4 C -0.155 4.155 5 C -0.096 4.096 6 C -0.072 4.072 7 C -0.059 4.059 8 N -0.086 5.086 9 C 0.072 3.928 10 N -0.231 5.231 11 C -0.112 4.112 12 C 0.103 3.897 13 H 0.035 0.965 14 C -0.190 4.190 15 C -0.545 4.545 16 H 0.084 0.916 17 C -0.141 4.141 18 N -0.527 5.527 19 Si 0.725 3.275 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 H 0.088 0.912 24 H 0.101 0.899 25 H 0.073 0.927 26 H 0.143 0.857 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.038 0.962 32 H 0.105 0.895 33 H 0.055 0.945 34 H 0.026 0.974 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.100 11.490 5.992 12.959 hybrid contribution 0.246 -0.733 -0.207 0.800 sum 0.346 10.757 5.784 12.219 Atomic orbital electron populations 1.20621 0.90158 1.02440 1.02587 1.19818 0.96915 0.90898 0.99814 1.21133 0.94102 0.97394 0.98665 1.20883 0.94155 0.97399 1.03045 1.20965 0.99589 0.90768 0.98259 1.16939 0.93380 0.87653 1.09223 1.25341 0.93491 0.92879 0.94185 1.81220 1.09972 1.09306 1.08136 1.19049 0.87680 0.93304 0.92784 1.59838 1.55206 1.02956 1.05065 1.22359 0.99311 0.99216 0.90295 1.19591 0.95885 0.90644 0.83583 0.96456 1.21802 0.98816 0.96763 1.01612 1.21096 1.25638 1.00296 1.07494 0.91649 1.24917 0.95372 0.98458 0.95342 1.69899 1.36697 1.35503 1.10635 0.86449 0.79680 0.83323 0.78024 1.19688 1.20951 1.21143 0.91213 0.89924 0.92723 0.85679 0.85632 0.85816 0.93160 0.89463 0.96239 0.89506 0.94476 0.97414 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 9.76 36.00 0.35 -1.03 16 2 C -0.07 -1.11 5.89 -104.46 -0.62 -1.73 16 3 C -0.09 -1.14 9.68 -39.54 -0.38 -1.52 16 4 C -0.14 -1.59 10.02 -39.62 -0.40 -1.99 16 5 C -0.07 -1.04 9.75 -39.19 -0.38 -1.42 16 6 C -0.07 -1.18 5.51 -106.61 -0.59 -1.77 16 7 C 0.26 5.30 9.99 -22.47 -0.22 5.08 16 8 N -0.41 -9.41 17.90 41.84 0.75 -8.67 16 9 C 0.17 3.11 3.29 -83.56 -0.28 2.84 16 10 N -0.51 -10.69 3.53 -172.43 -0.61 -11.30 16 11 C 0.03 0.70 8.99 60.06 0.54 1.24 16 12 C 0.21 5.19 1.73 -68.86 -0.12 5.07 16 13 H 0.02 0.49 4.91 -51.93 -0.25 0.24 16 14 C -0.13 -3.23 8.85 37.16 0.33 -2.90 16 15 C -0.51 -13.83 7.88 -34.44 -0.27 -14.10 16 16 H 0.07 1.76 6.40 -52.49 -0.34 1.43 16 17 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 18 N -0.89 -25.79 11.32 55.43 0.63 -25.16 16 19 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 20 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 24 H 0.08 1.25 7.46 -51.93 -0.39 0.87 16 25 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 26 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 27 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 28 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.84 6.10 -51.93 -0.32 1.52 16 31 H 0.02 0.40 5.41 -51.93 -0.28 0.12 16 32 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 33 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.01 0.16 7.22 -51.93 -0.37 -0.22 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 288.83 15.07 4.35 4.35 Total: -1.00 -30.45 288.83 -6.39 -36.84 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -4.36 Total: -2.01 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -2.13 Total: -10.64 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.77 Total: -45.13 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.45 -6.39 -36.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220978181.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.791 kcal (2) G-P(sol) polarization free energy of solvation -30.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds