Wall clock time and date at job start Mon Mar 30 2020 05:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38066 * 119.96571 * 2 1 4 4 C 1.38525 * 120.42374 * 179.97438 * 3 2 1 5 5 C 1.37836 * 120.34609 * 359.97438 * 4 3 2 6 6 C 1.39690 * 119.91889 * 359.97438 * 5 4 3 7 7 C 1.43201 * 120.20702 * 179.97438 * 6 5 4 8 8 N 4.81468 * 134.94955 * 179.97438 * 2 1 3 9 9 C 1.38842 * 119.96950 * 179.97438 * 2 1 3 10 10 N 1.39038 * 120.16758 * 0.02562 * 9 2 1 11 11 C 1.46890 * 110.99987 * 243.95131 * 10 9 2 12 12 C 1.46907 * 110.99660 * 119.99706 * 10 9 2 13 13 H 1.09001 * 109.46579 * 60.00156 * 12 10 9 14 14 C 1.52998 * 109.47368 * 299.99958 * 12 10 9 15 15 C 1.50699 * 109.46772 * 179.97438 * 12 10 9 16 16 H 1.07999 * 120.00226 * 0.02562 * 15 12 10 17 17 C 1.37878 * 119.99752 * 180.02562 * 15 12 10 18 18 N 1.31516 * 120.00178 * 359.97438 * 17 15 12 19 19 Si 1.86803 * 120.00013 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.46856 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47494 * 120.00012 * 19 17 15 22 22 H 1.48504 * 109.46703 * 240.00083 * 19 17 15 23 23 H 1.08997 * 109.47202 * 90.00097 * 1 2 3 24 24 H 1.09002 * 109.46500 * 210.00441 * 1 2 3 25 25 H 1.09003 * 109.46887 * 329.99778 * 1 2 3 26 26 H 1.08005 * 119.78503 * 0.25161 * 3 2 1 27 27 H 1.07994 * 119.82390 * 180.02562 * 4 3 2 28 28 H 1.07995 * 120.04086 * 180.02562 * 5 4 3 29 29 H 1.08996 * 109.47522 * 60.00530 * 11 10 9 30 30 H 1.09005 * 109.47220 * 180.02562 * 11 10 9 31 31 H 1.09000 * 109.47736 * 300.00058 * 11 10 9 32 32 H 1.08997 * 109.47084 * 180.02562 * 14 12 10 33 33 H 1.09004 * 109.47213 * 300.00420 * 14 12 10 34 34 H 1.09005 * 109.46828 * 59.99678 * 14 12 10 35 35 H 0.96993 * 119.99848 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1961 0.0000 4 6 3.5818 1.2072 0.0005 5 6 4.2877 0.0233 0.0016 6 6 3.6045 -1.1952 0.0027 7 6 4.3317 -2.4289 0.0033 8 7 4.9085 -3.4075 0.0015 9 6 2.2005 -1.2028 0.0005 10 7 1.5082 -2.4085 0.0005 11 6 1.7679 -3.1646 1.2328 12 6 1.8412 -3.2067 -1.1870 13 1 2.9106 -3.4177 -1.1947 14 6 1.4663 -2.4258 -2.4480 15 6 1.0742 -4.5034 -1.1518 16 1 0.4058 -4.7134 -0.3299 17 6 1.2256 -5.4217 -2.1691 18 7 2.0391 -5.1658 -3.1703 19 14 0.2743 -7.0288 -2.1260 20 1 -0.5666 -7.0735 -0.9028 21 1 -0.5933 -7.1228 -3.3274 22 1 1.2271 -8.1678 -2.1130 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3632 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6525 2.1291 0.0041 27 1 4.1114 2.1484 0.0009 28 1 5.3675 0.0377 0.0024 29 1 1.4474 -2.5778 2.0936 30 1 1.2146 -4.1035 1.2065 31 1 2.8346 -3.3741 1.3128 32 1 1.7130 -3.0182 -3.3291 33 1 0.3969 -2.2147 -2.4402 34 1 2.0214 -1.4880 -2.4731 35 1 2.1459 -5.8120 -3.8857 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220978181.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:46 Heat of formation + Delta-G solvation = 51.790205 kcal Electronic energy + Delta-G solvation = -17839.350654 eV Core-core repulsion = 15223.228055 eV Total energy + Delta-G solvation = -2616.122598 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.37187 -38.02605 -37.36774 -34.89747 -33.59421 -31.58348 -30.78910 -28.02064 -27.13044 -26.04286 -24.58472 -22.65870 -21.27717 -19.18642 -18.51006 -17.30027 -16.90700 -16.68827 -15.76306 -15.49635 -15.26922 -14.70208 -14.63977 -14.24875 -13.93203 -13.91197 -13.73739 -13.57103 -13.04849 -12.97445 -12.77939 -12.67654 -12.55723 -12.25509 -12.19209 -12.08362 -12.03151 -11.87572 -10.99256 -10.57515 -9.67930 -9.38595 -9.15060 -8.15874 -6.27023 -0.11330 0.47285 1.36058 1.37430 1.49082 1.67093 2.01972 2.37341 2.90348 3.01653 3.11965 3.22632 3.97203 4.20088 4.33753 4.47996 4.49808 4.55358 4.71078 4.81489 4.91062 4.97191 5.01527 5.04806 5.08014 5.14766 5.41323 5.43407 5.51968 5.54521 5.65725 5.72393 5.80546 6.04302 6.15677 6.22646 6.50934 6.81763 6.85124 7.41138 8.90264 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.028353 B = 0.008098 C = 0.007305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.328648 B = 3457.003891 C = 3831.829213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.081 4.081 3 C -0.074 4.074 4 C -0.117 4.117 5 C -0.071 4.071 6 C -0.099 4.099 7 C 0.271 3.729 8 N -0.472 5.472 9 C 0.133 3.867 10 N -0.505 5.505 11 C 0.040 3.960 12 C 0.210 3.790 13 H -0.012 1.012 14 C -0.114 4.114 15 C -0.518 4.518 16 H 0.062 0.938 17 C 0.010 3.990 18 N -0.919 5.919 19 Si 0.958 3.042 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.288 1.288 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.091 0.909 26 H 0.170 0.830 27 H 0.173 0.827 28 H 0.143 0.857 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.003 0.997 32 H 0.056 0.944 33 H 0.037 0.963 34 H 0.022 0.978 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.137 16.338 6.961 17.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.082 4.082 3 C -0.093 4.093 4 C -0.134 4.134 5 C -0.092 4.092 6 C -0.104 4.104 7 C -0.041 4.041 8 N -0.148 5.148 9 C 0.036 3.964 10 N -0.226 5.226 11 C -0.107 4.107 12 C 0.105 3.895 13 H 0.005 0.995 14 C -0.172 4.172 15 C -0.557 4.557 16 H 0.080 0.920 17 C -0.189 4.189 18 N -0.559 5.559 19 Si 0.784 3.216 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.214 1.214 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.110 0.890 26 H 0.187 0.813 27 H 0.190 0.810 28 H 0.161 0.839 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.021 0.979 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.041 0.959 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.697 14.804 6.783 16.299 hybrid contribution 0.512 -1.561 -0.392 1.689 sum -0.185 13.242 6.391 14.705 Atomic orbital electron populations 1.20622 0.89363 1.03219 1.02349 1.20074 0.97664 0.90726 0.99758 1.21647 0.94554 0.97717 0.95407 1.21431 0.94162 0.98100 0.99731 1.21306 1.00815 0.90032 0.97029 1.17196 0.93342 0.87707 1.12193 1.26041 0.92494 0.93098 0.92504 1.81187 1.12056 1.10877 1.10727 1.19209 0.88010 0.92993 0.96206 1.59672 1.55786 1.03459 1.03634 1.22310 0.97956 0.99017 0.91432 1.19327 0.93730 0.90729 0.85728 0.99451 1.21547 0.98866 0.96722 1.00099 1.21437 1.25431 1.01643 1.07145 0.91988 1.25713 0.96354 1.01678 0.95156 1.70041 1.38143 1.36479 1.11266 0.85494 0.78420 0.79238 0.78435 1.18790 1.20143 1.21444 0.91896 0.92140 0.89006 0.81304 0.80973 0.83893 0.90027 0.91500 0.97863 0.92570 0.94357 0.95895 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.42 9.76 71.24 0.70 -1.72 16 2 C -0.08 -2.20 5.89 -19.76 -0.12 -2.31 16 3 C -0.07 -1.38 9.68 22.30 0.22 -1.17 16 4 C -0.12 -2.04 10.02 22.24 0.22 -1.82 16 5 C -0.07 -1.75 9.75 22.53 0.22 -1.53 16 6 C -0.10 -3.45 5.51 -21.16 -0.12 -3.57 16 7 C 0.27 11.66 9.99 88.33 0.88 12.55 16 8 N -0.47 -22.82 17.90 19.00 0.34 -22.48 16 9 C 0.13 4.75 3.29 38.67 0.13 4.88 16 10 N -0.50 -21.43 3.53 -699.44 -2.47 -23.90 16 11 C 0.04 1.63 8.99 127.69 1.15 2.78 16 12 C 0.21 10.87 1.73 44.17 0.08 10.95 16 13 H -0.01 -0.68 4.91 -2.39 -0.01 -0.70 16 14 C -0.11 -5.71 8.85 71.98 0.64 -5.07 16 15 C -0.52 -29.17 7.88 25.60 0.20 -28.97 16 16 H 0.06 3.44 6.40 -2.91 -0.02 3.42 16 17 C 0.01 0.55 5.30 84.65 0.45 1.00 16 18 N -0.92 -55.25 11.32 21.45 0.24 -55.01 16 19 Si 0.96 45.35 29.54 68.60 2.03 47.37 16 20 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 23 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.06 1.75 7.46 -2.39 -0.02 1.73 16 25 H 0.09 1.52 8.08 -2.39 -0.02 1.50 16 26 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 27 H 0.17 1.55 8.06 -2.91 -0.02 1.53 16 28 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 29 H 0.08 2.74 8.14 -2.39 -0.02 2.73 16 30 H 0.07 2.94 6.10 -2.38 -0.01 2.93 16 31 H 0.00 0.13 5.41 -2.39 -0.01 0.12 16 32 H 0.06 3.15 6.07 -2.39 -0.01 3.13 16 33 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.02 1.02 7.22 -2.38 -0.02 1.00 16 35 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -70.52 288.83 5.88 -64.65 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: 1.10 Total: 3.39 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: 4.64 Total: -14.02 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -1.89 Total: -101.39 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -70.52 5.88 -64.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220978181.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.436 kcal (2) G-P(sol) polarization free energy of solvation -70.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds