Wall clock time and date at job start Mon Mar 30 2020 07:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36829 * 125.06168 * 2 1 4 4 C 1.34242 * 109.93129 * 179.73402 * 3 2 1 5 5 C 1.50698 * 126.50531 * 180.28443 * 4 3 2 6 6 N 1.46894 * 109.47102 * 259.97893 * 5 4 3 7 7 C 1.46906 * 110.99814 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47051 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00146 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00213 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00347 * 180.02562 * 10 8 7 12 12 Si 1.86807 * 119.99850 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.46988 * 90.00035 * 12 10 8 14 14 H 1.48503 * 109.47040 * 210.00062 * 12 10 8 15 15 H 1.48498 * 109.47087 * 329.99873 * 12 10 8 16 16 C 1.46491 * 106.99657 * 0.26676 * 4 3 2 17 17 C 1.39627 * 134.03250 * 180.02562 * 16 4 3 18 18 C 1.36628 * 119.76112 * 179.97438 * 17 16 4 19 19 C 1.38824 * 120.53228 * 359.97438 * 18 17 16 20 20 C 1.37752 * 120.66701 * 359.97438 * 19 18 17 21 21 C 1.37691 * 125.06580 * 180.20252 * 2 1 3 22 22 H 1.09000 * 109.46857 * 90.02998 * 1 2 3 23 23 H 1.09000 * 109.46992 * 210.02533 * 1 2 3 24 24 H 1.08998 * 109.46961 * 330.02210 * 1 2 3 25 25 H 1.08002 * 125.03779 * 0.02562 * 3 2 1 26 26 H 1.09004 * 109.46924 * 19.97616 * 5 4 3 27 27 H 1.08997 * 109.47029 * 139.97245 * 5 4 3 28 28 H 1.00906 * 111.00194 * 56.04617 * 6 5 4 29 29 H 1.08999 * 109.46930 * 299.99720 * 7 6 5 30 30 H 1.09001 * 109.47026 * 59.99802 * 7 6 5 31 31 H 0.97002 * 119.99804 * 179.97438 * 11 10 8 32 32 H 1.07999 * 120.11793 * 359.95479 * 17 16 4 33 33 H 1.08008 * 119.73158 * 179.97438 * 18 17 16 34 34 H 1.08001 * 119.67281 * 180.02562 * 19 18 17 35 35 H 1.08000 * 120.11187 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1200 0.0000 4 6 3.5469 0.7696 0.0059 5 6 4.7285 1.7049 0.0139 6 7 5.2689 1.8228 -1.3469 7 6 6.4244 2.7295 -1.3778 8 6 6.9508 2.8245 -2.7866 9 1 6.4745 2.2675 -3.5798 10 6 8.0400 3.6234 -3.0632 11 7 8.4991 3.7067 -4.2928 12 14 8.8635 4.5874 -1.6913 13 1 9.9370 3.7621 -1.0817 14 1 9.4515 5.8333 -2.2458 15 1 7.8567 4.9333 -0.6560 16 6 3.5946 -0.6945 0.0034 17 6 4.6296 -1.6318 0.0073 18 6 4.3361 -2.9662 0.0038 19 6 3.0168 -3.3981 -0.0031 20 6 1.9804 -2.4907 -0.0060 21 6 2.2561 -1.1270 -0.0040 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3633 0.8902 0.5135 25 1 1.8834 2.1355 0.0004 26 1 4.4121 2.6870 0.3654 27 1 5.4984 1.3120 0.6779 28 1 4.5560 2.1240 -1.9944 29 1 6.1193 3.7185 -1.0360 30 1 7.2062 2.3440 -0.7234 31 1 9.2651 4.2691 -4.4874 32 1 5.6583 -1.3032 0.0128 33 1 5.1370 -3.6908 0.0064 34 1 2.8006 -4.4563 -0.0054 35 1 0.9573 -2.8366 -0.0110 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227519042.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:24 Heat of formation + Delta-G solvation = 63.933605 kcal Electronic energy + Delta-G solvation = -16610.910970 eV Core-core repulsion = 13995.314949 eV Total energy + Delta-G solvation = -2615.596021 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.16332 -36.91946 -35.60499 -33.05055 -31.94859 -30.18734 -29.12037 -27.99522 -26.01203 -23.56858 -22.45799 -21.21996 -21.00875 -19.27424 -16.98081 -16.41937 -16.36988 -15.37056 -15.28195 -14.70501 -14.15002 -13.84236 -13.70899 -13.63499 -12.95722 -12.82446 -12.73027 -12.40093 -12.24442 -11.75434 -11.37293 -11.22700 -11.07149 -10.74392 -10.50061 -10.41766 -9.83824 -9.33804 -9.23049 -8.54420 -8.00514 -7.47091 -7.27278 -6.01307 -3.98856 1.31688 1.81054 2.82442 2.88845 3.32280 3.39041 3.41589 4.11948 4.45991 4.63709 4.80673 4.94915 5.02253 5.10736 5.24697 5.28660 5.31312 5.38165 5.53209 5.67062 5.75630 5.93213 6.04077 6.09668 6.19300 6.41707 6.65775 6.82872 6.83599 6.94585 7.02789 7.08540 7.38101 7.43276 7.66930 7.98238 8.43442 8.71810 9.07837 9.60872 11.12123 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.030808 B = 0.004960 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.635167 B = 5643.497296 C = 6097.289615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.492 5.492 3 C 0.042 3.958 4 C -0.147 4.147 5 C 0.128 3.872 6 N -0.674 5.674 7 C 0.163 3.837 8 C -0.514 4.514 9 H 0.079 0.921 10 C 0.068 3.932 11 N -0.902 5.902 12 Si 0.878 3.122 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.268 1.268 16 C -0.088 4.088 17 C -0.052 4.052 18 C -0.156 4.156 19 C -0.101 4.101 20 C -0.138 4.138 21 C 0.094 3.906 22 H 0.066 0.934 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.164 0.836 26 H 0.025 0.975 27 H 0.071 0.929 28 H 0.335 0.665 29 H -0.017 1.017 30 H 0.022 0.978 31 H 0.263 0.737 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.860 -9.462 11.630 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.176 5.176 3 C -0.083 4.083 4 C -0.154 4.154 5 C -0.002 4.002 6 N -0.305 5.305 7 C 0.035 3.965 8 C -0.552 4.552 9 H 0.097 0.903 10 C -0.134 4.134 11 N -0.541 5.541 12 Si 0.705 3.295 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.193 1.193 16 C -0.093 4.093 17 C -0.071 4.071 18 C -0.176 4.176 19 C -0.121 4.121 20 C -0.159 4.159 21 C -0.012 4.012 22 H 0.084 0.916 23 H 0.095 0.905 24 H 0.098 0.902 25 H 0.181 0.819 26 H 0.043 0.957 27 H 0.089 0.911 28 H 0.152 0.848 29 H 0.001 0.999 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.144 0.856 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.678 -9.888 11.576 21.853 hybrid contribution -0.036 1.458 0.629 1.588 sum -15.714 -8.429 12.205 21.609 Atomic orbital electron populations 1.21851 0.77663 1.03689 1.02702 1.43668 1.05459 1.04319 1.64176 1.21572 0.90054 0.90790 1.05858 1.20376 0.93445 0.92201 1.09385 1.20204 0.92616 0.94231 0.93127 1.60484 1.10567 1.54935 1.04465 1.20014 0.89189 0.88967 0.98284 1.21079 1.13982 1.27197 0.92929 0.90322 1.24909 0.96688 0.96410 0.95363 1.69908 1.25369 1.39982 1.18850 0.86821 0.80089 0.79840 0.82746 1.20132 1.21291 1.19253 1.19048 0.91798 0.92958 1.05459 1.20403 0.98642 0.91815 0.96203 1.20605 0.96280 0.95563 1.05102 1.20731 0.92375 0.98485 1.00470 1.19888 0.99049 0.89228 1.07744 1.18278 0.90238 0.88203 1.04482 0.91575 0.90513 0.90191 0.81861 0.95744 0.91064 0.84772 0.99937 0.95996 0.92710 0.85613 0.86295 0.86259 0.86968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 11.03 59.85 0.66 1.33 16 2 N -0.49 -6.27 3.18 -121.80 -0.39 -6.65 16 3 C 0.04 0.57 11.20 -16.73 -0.19 0.38 16 4 C -0.15 -2.40 5.83 -102.71 -0.60 -3.00 16 5 C 0.13 2.28 6.21 -4.98 -0.03 2.25 16 6 N -0.67 -14.59 6.48 -116.34 -0.75 -15.35 16 7 C 0.16 4.06 4.51 -4.97 -0.02 4.04 16 8 C -0.51 -15.04 9.87 -34.44 -0.34 -15.38 16 9 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 10 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 11 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 12 Si 0.88 21.86 27.47 -169.99 -4.67 17.19 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 16 C -0.09 -1.46 6.35 -105.14 -0.67 -2.12 16 17 C -0.05 -0.82 10.05 -39.64 -0.40 -1.22 16 18 C -0.16 -2.10 9.97 -39.95 -0.40 -2.50 16 19 C -0.10 -1.23 10.01 -39.54 -0.40 -1.63 16 20 C -0.14 -1.74 9.97 -39.43 -0.39 -2.14 16 21 C 0.09 1.37 6.81 -83.98 -0.57 0.80 16 22 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.08 0.51 8.11 -51.93 -0.42 0.09 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.16 1.77 8.06 -52.49 -0.42 1.34 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.34 7.15 8.71 -39.29 -0.34 6.80 16 29 H -0.02 -0.42 7.20 -51.93 -0.37 -0.79 16 30 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 31 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 32 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 33 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.11 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 299.93 15.07 4.52 4.52 Total: -1.00 -33.28 299.93 -8.88 -42.16 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -4.92 Total: 2.81 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -3.44 Total: -17.28 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.37 Total: -49.40 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.67 Total: 17.19 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.28 -8.88 -42.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227519042.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.097 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds