Wall clock time and date at job start Mon Mar 30 2020 07:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36829 * 125.06168 * 2 1 4 4 C 1.34242 * 109.93129 * 179.73402 * 3 2 1 5 5 C 1.50698 * 126.50531 * 180.28443 * 4 3 2 6 6 N 1.46894 * 109.47102 * 259.97893 * 5 4 3 7 7 C 1.46906 * 110.99814 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.47051 * 179.97438 * 7 6 5 9 9 H 1.07997 * 120.00146 * 0.02562 * 8 7 6 10 10 C 1.37872 * 120.00213 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00347 * 180.02562 * 10 8 7 12 12 Si 1.86807 * 119.99850 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.46988 * 90.00035 * 12 10 8 14 14 H 1.48503 * 109.47040 * 210.00062 * 12 10 8 15 15 H 1.48498 * 109.47087 * 329.99873 * 12 10 8 16 16 C 1.46491 * 106.99657 * 0.26676 * 4 3 2 17 17 C 1.39627 * 134.03250 * 180.02562 * 16 4 3 18 18 C 1.36628 * 119.76112 * 179.97438 * 17 16 4 19 19 C 1.38824 * 120.53228 * 359.97438 * 18 17 16 20 20 C 1.37752 * 120.66701 * 359.97438 * 19 18 17 21 21 C 1.37691 * 125.06580 * 180.20252 * 2 1 3 22 22 H 1.09000 * 109.46857 * 90.02998 * 1 2 3 23 23 H 1.09000 * 109.46992 * 210.02533 * 1 2 3 24 24 H 1.08998 * 109.46961 * 330.02210 * 1 2 3 25 25 H 1.08002 * 125.03779 * 0.02562 * 3 2 1 26 26 H 1.09004 * 109.46924 * 19.97616 * 5 4 3 27 27 H 1.08997 * 109.47029 * 139.97245 * 5 4 3 28 28 H 1.00906 * 111.00194 * 56.04617 * 6 5 4 29 29 H 1.08999 * 109.46930 * 299.99720 * 7 6 5 30 30 H 1.09001 * 109.47026 * 59.99802 * 7 6 5 31 31 H 0.97002 * 119.99804 * 179.97438 * 11 10 8 32 32 H 1.07999 * 120.11793 * 359.95479 * 17 16 4 33 33 H 1.08008 * 119.73158 * 179.97438 * 18 17 16 34 34 H 1.08001 * 119.67281 * 180.02562 * 19 18 17 35 35 H 1.08000 * 120.11187 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1200 0.0000 4 6 3.5469 0.7696 0.0059 5 6 4.7285 1.7049 0.0139 6 7 5.2689 1.8228 -1.3469 7 6 6.4244 2.7295 -1.3778 8 6 6.9508 2.8245 -2.7866 9 1 6.4745 2.2675 -3.5798 10 6 8.0400 3.6234 -3.0632 11 7 8.4991 3.7067 -4.2928 12 14 8.8635 4.5874 -1.6913 13 1 9.9370 3.7621 -1.0817 14 1 9.4515 5.8333 -2.2458 15 1 7.8567 4.9333 -0.6560 16 6 3.5946 -0.6945 0.0034 17 6 4.6296 -1.6318 0.0073 18 6 4.3361 -2.9662 0.0038 19 6 3.0168 -3.3981 -0.0031 20 6 1.9804 -2.4907 -0.0060 21 6 2.2561 -1.1270 -0.0040 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3633 -0.8898 0.5142 24 1 -0.3633 0.8902 0.5135 25 1 1.8834 2.1355 0.0004 26 1 4.4121 2.6870 0.3654 27 1 5.4984 1.3120 0.6779 28 1 4.5560 2.1240 -1.9944 29 1 6.1193 3.7185 -1.0360 30 1 7.2062 2.3440 -0.7234 31 1 9.2651 4.2691 -4.4874 32 1 5.6583 -1.3032 0.0128 33 1 5.1370 -3.6908 0.0064 34 1 2.8006 -4.4563 -0.0054 35 1 0.9573 -2.8366 -0.0110 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227519042.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:22 Heat of formation + Delta-G solvation = 42.222009 kcal Electronic energy + Delta-G solvation = -16611.852455 eV Core-core repulsion = 13995.314949 eV Total energy + Delta-G solvation = -2616.537506 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.18310 -37.93437 -37.23309 -34.80903 -33.54074 -31.15451 -30.50000 -29.36579 -27.35114 -24.94976 -23.48708 -23.02472 -22.22609 -20.41504 -18.95856 -17.70062 -17.37463 -16.64266 -16.25455 -16.23674 -15.83212 -15.35834 -14.93035 -14.72883 -14.51836 -14.21710 -13.84514 -13.66628 -13.38180 -13.07257 -12.94675 -12.55307 -12.40100 -12.16521 -12.07946 -11.85330 -11.64327 -11.46204 -10.80221 -10.42648 -9.10099 -9.02340 -8.43054 -8.29285 -6.34185 0.26968 0.76296 1.35970 1.37800 1.49080 1.72939 1.98759 2.35168 3.04157 3.04726 3.72487 3.84929 3.93173 3.99287 4.17741 4.34078 4.41060 4.48883 4.51635 4.68471 4.72339 4.75840 4.79981 4.91822 4.94035 5.05728 5.10759 5.31580 5.53144 5.63165 5.77768 5.88327 5.91592 5.99795 6.34432 6.49237 6.60439 6.68287 6.78885 7.30999 8.87628 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.030808 B = 0.004960 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.635167 B = 5643.497296 C = 6097.289615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.489 5.489 3 C 0.061 3.939 4 C -0.191 4.191 5 C 0.137 3.863 6 N -0.685 5.685 7 C 0.175 3.825 8 C -0.529 4.529 9 H 0.033 0.967 10 C 0.007 3.993 11 N -0.949 5.949 12 Si 0.954 3.046 13 H -0.266 1.266 14 H -0.279 1.279 15 H -0.249 1.249 16 C -0.120 4.120 17 C -0.088 4.088 18 C -0.156 4.156 19 C -0.104 4.104 20 C -0.134 4.134 21 C 0.076 3.924 22 H 0.075 0.925 23 H 0.093 0.907 24 H 0.103 0.897 25 H 0.194 0.806 26 H 0.040 0.960 27 H 0.062 0.938 28 H 0.334 0.666 29 H -0.010 1.010 30 H 0.022 0.978 31 H 0.268 0.732 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.154 0.846 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.868 -9.642 13.576 24.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.172 5.172 3 C -0.065 4.065 4 C -0.199 4.199 5 C 0.008 3.992 6 N -0.316 5.316 7 C 0.047 3.953 8 C -0.567 4.567 9 H 0.051 0.949 10 C -0.190 4.190 11 N -0.590 5.590 12 Si 0.777 3.223 13 H -0.191 1.191 14 H -0.205 1.205 15 H -0.172 1.172 16 C -0.125 4.125 17 C -0.107 4.107 18 C -0.175 4.175 19 C -0.123 4.123 20 C -0.154 4.154 21 C -0.031 4.031 22 H 0.093 0.907 23 H 0.112 0.888 24 H 0.121 0.879 25 H 0.211 0.789 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.151 0.849 29 H 0.008 0.992 30 H 0.040 0.960 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.154 0.846 34 H 0.172 0.828 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.731 -10.095 13.535 24.485 hybrid contribution 0.467 1.401 -0.045 1.478 sum -17.264 -8.693 13.490 23.571 Atomic orbital electron populations 1.22208 0.74655 1.05768 1.03939 1.43984 1.07181 1.03370 1.62643 1.21976 0.89401 0.92283 1.02854 1.20283 0.94049 0.92138 1.13396 1.20097 0.93217 0.95458 0.90461 1.60386 1.10212 1.54001 1.07010 1.19756 0.90380 0.89947 0.95245 1.21341 1.14329 1.26834 0.94178 0.94882 1.25908 0.97280 0.97518 0.98276 1.70065 1.26232 1.41186 1.21485 0.85615 0.79222 0.78161 0.79299 1.19144 1.20456 1.17227 1.19357 0.93221 0.93387 1.06515 1.20457 0.97931 0.93250 0.99058 1.20899 0.97889 0.94859 1.03846 1.21145 0.91503 1.00288 0.99377 1.20315 1.00795 0.88357 1.05958 1.18571 0.89831 0.89560 1.05090 0.90669 0.88840 0.87880 0.78925 0.94173 0.91949 0.84889 0.99192 0.95970 0.92324 0.87586 0.84597 0.82834 0.83783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 11.03 127.77 1.41 2.33 16 2 N -0.49 -11.28 3.18 -539.27 -1.71 -13.00 16 3 C 0.06 1.57 11.20 83.00 0.93 2.50 16 4 C -0.19 -6.25 5.83 -18.62 -0.11 -6.36 16 5 C 0.14 4.91 6.21 85.56 0.53 5.45 16 6 N -0.69 -30.42 6.48 -521.99 -3.38 -33.80 16 7 C 0.18 8.78 4.51 85.56 0.39 9.17 16 8 C -0.53 -31.99 9.87 25.60 0.25 -31.74 16 9 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 10 C 0.01 0.45 5.47 84.65 0.46 0.91 16 11 N -0.95 -60.85 13.96 21.45 0.30 -60.55 16 12 Si 0.95 45.07 27.47 68.60 1.88 46.95 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 14 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 15 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 16 C -0.12 -4.03 6.35 -20.20 -0.13 -4.16 16 17 C -0.09 -2.91 10.05 22.23 0.22 -2.69 16 18 C -0.16 -4.12 9.97 22.03 0.22 -3.90 16 19 C -0.10 -2.29 10.01 22.29 0.22 -2.07 16 20 C -0.13 -3.02 9.97 22.37 0.22 -2.80 16 21 C 0.08 2.10 6.81 39.03 0.27 2.37 16 22 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.09 0.87 8.11 -2.39 -0.02 0.85 16 24 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.19 3.59 8.06 -2.91 -0.02 3.56 16 26 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.33 14.68 8.71 -89.69 -0.78 13.90 16 29 H -0.01 -0.46 7.20 -2.39 -0.02 -0.48 16 30 H 0.02 1.11 7.57 -2.39 -0.02 1.09 16 31 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 32 H 0.11 3.71 8.06 -2.91 -0.02 3.69 16 33 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 34 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -74.79 299.93 2.22 -72.57 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: 0.24 Total: 18.82 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 4.89 Total: -30.99 kcal Atomic # 7 Polarization: -102.56 SS G_CDS: -4.80 Total: -107.36 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 1.88 Total: 46.95 kcal Total: -74.79 2.22 -72.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227519042.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.794 kcal (2) G-P(sol) polarization free energy of solvation -74.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds