Wall clock time and date at job start Mon Mar 30 2020 06:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47121 * 2 1 4 4 N 1.46896 * 109.47242 * 119.99711 * 2 1 3 5 5 C 1.53001 * 109.46899 * 239.99959 * 2 1 3 6 6 C 1.50707 * 109.46868 * 175.00021 * 5 2 1 7 7 C 1.38749 * 119.67903 * 89.99627 * 6 5 2 8 8 C 1.37774 * 120.36689 * 179.74351 * 7 6 5 9 9 C 1.39514 * 119.65529 * 0.25502 * 8 7 6 10 10 C 1.46660 * 133.96987 * 179.97438 * 9 8 7 11 11 C 1.34299 * 107.05364 * 180.02562 * 10 9 8 12 12 N 1.37003 * 109.93204 * 0.02562 * 11 10 9 13 13 C 1.37207 * 125.09439 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99644 * 201.06530 * 13 12 11 15 15 C 1.38848 * 119.99991 * 21.06979 * 13 12 11 16 16 N 1.31435 * 119.99999 * 10.74834 * 15 13 12 17 17 Si 1.86803 * 120.00186 * 190.75267 * 15 13 12 18 18 H 1.48503 * 109.46915 * 59.99551 * 17 15 13 19 19 H 1.48496 * 109.47043 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.46889 * 299.99795 * 17 15 13 21 21 C 1.38111 * 109.81707 * 0.02562 * 12 11 10 22 22 C 1.37905 * 119.67372 * 270.27212 * 6 5 2 23 23 H 1.08996 * 109.46691 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47179 * 300.00020 * 1 2 3 25 25 H 1.09000 * 109.47334 * 60.00048 * 1 2 3 26 26 H 1.00905 * 111.00354 * 296.04838 * 4 2 1 27 27 H 1.00900 * 111.00353 * 60.00120 * 4 2 1 28 28 H 1.08997 * 109.47327 * 55.00240 * 5 2 1 29 29 H 1.08993 * 109.47131 * 294.99397 * 5 2 1 30 30 H 1.07996 * 119.81228 * 0.02562 * 7 6 5 31 31 H 1.07999 * 120.17365 * 180.23490 * 8 7 6 32 32 H 1.07997 * 126.47624 * 0.06396 * 10 9 8 33 33 H 1.07997 * 125.04124 * 180.02562 * 11 10 9 34 34 H 0.97007 * 120.00567 * 179.97438 * 16 15 13 35 35 H 1.07994 * 120.03878 * 359.95687 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0400 -0.7213 -1.2493 6 6 3.5419 -0.6149 -1.3127 7 6 4.3257 -1.5889 -0.7108 8 6 5.7000 -1.5085 -0.7647 9 6 6.3035 -0.4376 -1.4245 10 6 7.6956 -0.0462 -1.6689 11 6 7.6655 1.0981 -2.3713 12 7 6.3674 1.4735 -2.5972 13 6 5.9789 2.5953 -3.2851 14 1 4.9899 3.0035 -3.1378 15 6 6.8571 3.2055 -4.1707 16 7 7.9729 2.6003 -4.5115 17 14 6.4528 4.8866 -4.8777 18 1 6.3176 5.8690 -3.7723 19 1 7.5435 5.3153 -5.7897 20 1 5.1762 4.8121 -5.6326 21 6 5.5083 0.5535 -2.0287 22 6 4.1239 0.4525 -1.9636 23 1 -0.3632 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.7503 -0.1989 2.0373 27 1 1.6962 -1.6479 1.2228 28 1 1.6054 -0.2618 -2.1370 29 1 1.7517 -1.7715 -1.2055 30 1 3.8557 -2.4170 -0.2012 31 1 6.3070 -2.2704 -0.2984 32 1 8.5783 -0.5780 -1.3458 33 1 8.5355 1.6420 -2.7082 34 1 8.5864 3.0264 -5.1305 35 1 3.5044 1.2070 -2.4254 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229747502.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:46 Heat of formation + Delta-G solvation = 43.355827 kcal Electronic energy + Delta-G solvation = -17051.070302 eV Core-core repulsion = 14434.581961 eV Total energy + Delta-G solvation = -2616.488340 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.88109 -37.37324 -35.31211 -33.09566 -31.06858 -29.47903 -28.52504 -28.38330 -25.18863 -24.68381 -21.48530 -20.69255 -19.74536 -19.42898 -17.44494 -16.00816 -15.45097 -15.03951 -14.70773 -14.40526 -13.99307 -13.34708 -13.20755 -13.02603 -12.84053 -12.70682 -12.14123 -11.88072 -11.71420 -11.33225 -11.24773 -10.99145 -10.82039 -10.64924 -10.62311 -10.40266 -10.04732 -9.66836 -9.09015 -8.50592 -8.35225 -6.93150 -6.75681 -6.41397 -4.20825 2.33571 2.80075 3.05353 3.07021 3.08858 3.86108 4.15254 4.69488 4.84574 4.94742 5.01530 5.19230 5.25381 5.42986 5.64402 5.81899 5.91828 5.93550 6.05341 6.15518 6.19924 6.35471 6.57337 6.58331 6.64957 7.03045 7.18307 7.23785 7.25715 7.32415 7.36350 7.61520 7.69578 7.70457 7.79338 8.16229 8.32377 8.55122 9.11412 9.54973 10.36219 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.024733 B = 0.006647 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.834994 B = 4211.243228 C = 5143.253879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.092 3.908 3 H 0.080 0.920 4 N -0.832 5.832 5 C -0.060 4.060 6 C -0.088 4.088 7 C -0.138 4.138 8 C -0.090 4.090 9 C -0.117 4.117 10 C -0.289 4.289 11 C 0.085 3.915 12 N -0.295 5.295 13 C -0.338 4.338 14 H 0.102 0.898 15 C 0.041 3.959 16 N -0.856 5.856 17 Si 0.938 3.062 18 H -0.268 1.268 19 H -0.278 1.278 20 H -0.269 1.269 21 C 0.055 3.945 22 C -0.109 4.109 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.334 0.666 27 H 0.334 0.666 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.168 0.832 34 H 0.278 0.722 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.303 -3.259 5.727 11.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.020 4.020 3 H 0.098 0.902 4 N -0.361 5.361 5 C -0.098 4.098 6 C -0.090 4.090 7 C -0.158 4.158 8 C -0.109 4.109 9 C -0.123 4.123 10 C -0.313 4.313 11 C -0.049 4.049 12 N 0.041 4.959 13 C -0.466 4.466 14 H 0.120 0.880 15 C -0.167 4.167 16 N -0.488 5.488 17 Si 0.762 3.238 18 H -0.193 1.193 19 H -0.203 1.203 20 H -0.194 1.194 21 C -0.056 4.056 22 C -0.129 4.129 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.146 0.854 27 H 0.146 0.854 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.139 0.861 33 H 0.185 0.815 34 H 0.089 0.911 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.455 -2.744 5.069 10.233 hybrid contribution -1.085 0.718 -0.238 1.323 sum -9.540 -2.026 4.831 10.884 Atomic orbital electron populations 1.22688 0.98500 1.01555 1.01913 1.21464 0.90713 0.98879 0.90943 0.90158 1.58778 1.67588 1.05822 1.03883 1.20456 0.93219 0.99842 0.96252 1.18872 0.93363 0.95876 1.00908 1.20195 0.92715 0.99572 1.03306 1.20206 0.93947 0.96808 0.99934 1.19032 0.93387 0.96241 1.03662 1.21263 0.94012 1.01686 1.14373 1.22050 0.87983 0.96580 0.98326 1.40170 1.03628 1.15961 1.36109 1.19745 1.02403 1.02569 1.21885 0.87989 1.25459 0.95628 1.00191 0.95387 1.69892 1.10599 1.37037 1.31294 0.85820 0.78558 0.80492 0.78886 1.19301 1.20281 1.19379 1.18315 0.91643 0.92145 1.03514 1.19636 0.91286 0.98783 1.03217 0.92930 0.93109 0.92168 0.85382 0.85384 0.91639 0.92073 0.88145 0.88165 0.86104 0.81451 0.91125 0.88172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.90 9.48 37.16 0.35 -1.55 16 2 C 0.09 1.19 3.34 -67.71 -0.23 0.96 16 3 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 4 N -0.83 -10.19 8.60 -4.67 -0.04 -10.23 16 5 C -0.06 -0.88 4.98 -27.88 -0.14 -1.02 16 6 C -0.09 -1.70 4.96 -104.55 -0.52 -2.22 16 7 C -0.14 -2.67 9.26 -39.56 -0.37 -3.04 16 8 C -0.09 -1.93 10.10 -39.28 -0.40 -2.32 16 9 C -0.12 -2.90 6.37 -105.09 -0.67 -3.57 16 10 C -0.29 -7.12 11.08 -37.57 -0.42 -7.54 16 11 C 0.09 2.26 9.89 -16.63 -0.16 2.09 16 12 N -0.30 -8.08 2.92 -59.73 -0.17 -8.25 16 13 C -0.34 -9.12 9.93 -14.92 -0.15 -9.27 16 14 H 0.10 2.62 7.85 -52.49 -0.41 2.21 16 15 C 0.04 1.05 5.35 -17.50 -0.09 0.95 16 16 N -0.86 -22.66 10.84 55.49 0.60 -22.06 16 17 Si 0.94 19.44 29.57 -169.99 -5.03 14.42 16 18 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 19 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 C 0.05 1.41 6.75 -83.84 -0.57 0.84 16 22 C -0.11 -2.46 9.58 -39.44 -0.38 -2.83 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.33 3.51 9.07 -39.29 -0.36 3.15 16 27 H 0.33 3.54 9.00 -39.29 -0.35 3.18 16 28 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 29 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 30 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.12 2.63 8.06 -52.49 -0.42 2.20 16 33 H 0.17 4.43 6.34 -52.49 -0.33 4.10 16 34 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 35 H 0.10 2.16 8.06 -52.49 -0.42 1.73 16 LS Contribution 295.85 15.07 4.46 4.46 Total: -1.00 -29.10 295.85 -8.72 -37.82 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -4.81 Total: 12.37 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: -3.73 Total: -28.51 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.39 Total: -40.55 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.42 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.10 -8.72 -37.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229747502.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.176 kcal (2) G-P(sol) polarization free energy of solvation -29.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds