Wall clock time and date at job start Mon Mar 30 2020 06:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47557 * 2 1 4 4 N 1.46896 * 109.47462 * 239.99342 * 2 1 3 5 5 C 1.53004 * 109.47123 * 119.99733 * 2 1 3 6 6 C 1.50698 * 109.47375 * 185.00190 * 5 2 1 7 7 C 1.38743 * 119.67820 * 90.00128 * 6 5 2 8 8 C 1.37782 * 120.36746 * 180.02562 * 7 6 5 9 9 C 1.39520 * 119.65287 * 359.97173 * 8 7 6 10 10 C 1.46657 * 133.96884 * 179.97438 * 9 8 7 11 11 C 1.34303 * 107.04982 * 180.02562 * 10 9 8 12 12 N 1.36999 * 109.93172 * 359.94754 * 11 10 9 13 13 C 1.37210 * 125.09273 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00299 * 159.00454 * 13 12 11 15 15 C 1.38850 * 119.99811 * 338.99810 * 13 12 11 16 16 N 1.31441 * 120.00361 * 349.14124 * 15 13 12 17 17 Si 1.86804 * 120.00158 * 169.13868 * 15 13 12 18 18 H 1.48500 * 109.46762 * 90.00015 * 17 15 13 19 19 H 1.48496 * 109.47280 * 210.00165 * 17 15 13 20 20 H 1.48499 * 109.46737 * 330.00343 * 17 15 13 21 21 C 1.38108 * 109.81576 * 0.06716 * 12 11 10 22 22 C 1.37901 * 119.67562 * 269.97548 * 6 5 2 23 23 H 1.09008 * 109.47182 * 300.00439 * 1 2 3 24 24 H 1.09007 * 109.47048 * 60.00090 * 1 2 3 25 25 H 1.09000 * 109.47557 * 179.97438 * 1 2 3 26 26 H 1.00894 * 111.00106 * 176.04596 * 4 2 1 27 27 H 1.00897 * 110.99977 * 300.00443 * 4 2 1 28 28 H 1.08999 * 109.47071 * 64.99514 * 5 2 1 29 29 H 1.09006 * 109.46546 * 305.00196 * 5 2 1 30 30 H 1.07995 * 119.81905 * 359.97438 * 7 6 5 31 31 H 1.08002 * 120.17589 * 179.69668 * 8 7 6 32 32 H 1.07997 * 126.47890 * 0.07658 * 10 9 8 33 33 H 1.08003 * 125.03826 * 180.02562 * 11 10 9 34 34 H 0.96999 * 120.00400 * 180.02562 * 16 15 13 35 35 H 1.07999 * 120.03726 * 0.02709 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0399 -0.7212 1.2493 6 6 3.5418 -0.6149 1.3129 7 6 4.1274 0.4561 1.9726 8 6 5.4991 0.5676 2.0389 9 6 6.3005 -0.4040 1.4386 10 6 7.7493 -0.5960 1.3172 11 6 7.9394 -1.7275 0.6191 12 7 6.7306 -2.2780 0.2836 13 6 6.5629 -3.4377 -0.4302 14 1 5.6310 -3.9802 -0.3679 15 6 7.5911 -3.9139 -1.2326 16 7 8.6368 -3.1567 -1.4793 17 14 7.4884 -5.6308 -1.9616 18 1 6.8189 -5.5671 -3.2855 19 1 8.8576 -6.1818 -2.1253 20 1 6.7070 -6.5082 -1.0534 21 6 5.7061 -1.4902 0.7707 22 6 4.3207 -1.5832 0.7152 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 3.0261 -0.6502 -1.2557 27 1 1.6961 -1.6480 -1.2225 28 1 1.7515 -1.7714 1.2057 29 1 1.6052 -0.2616 2.1370 30 1 3.5046 1.2069 2.4360 31 1 5.9516 1.4052 2.5490 32 1 8.5182 0.0499 1.7147 33 1 8.9026 -2.1427 0.3615 34 1 9.3549 -3.4892 -2.0402 35 1 3.8546 -2.4127 0.2042 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229747512.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:57 Heat of formation + Delta-G solvation = 39.458499 kcal Electronic energy + Delta-G solvation = -17180.713799 eV Core-core repulsion = 14564.056458 eV Total energy + Delta-G solvation = -2616.657341 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -40.07047 -37.53809 -35.26923 -33.16383 -31.07423 -29.44904 -28.83327 -28.43486 -25.21893 -24.81139 -21.50805 -20.81561 -19.89250 -19.51452 -17.50186 -15.88317 -15.66739 -15.15916 -14.68261 -14.39158 -14.11471 -13.72006 -13.27576 -13.10134 -12.96285 -12.38830 -12.02999 -11.81487 -11.79481 -11.57379 -11.36005 -11.02288 -10.80988 -10.70932 -10.67639 -10.53425 -10.29045 -9.84461 -9.22591 -8.59244 -8.40179 -7.12078 -6.88175 -6.56644 -4.32647 2.13080 2.58035 2.97202 3.00905 3.05403 3.77870 4.02780 4.71025 4.77377 4.87651 4.97386 5.19976 5.31362 5.55169 5.66384 5.77340 5.82003 5.94185 5.96085 6.11283 6.24739 6.33142 6.38535 6.39217 6.50835 6.89583 7.02943 7.05924 7.09333 7.17286 7.43303 7.50890 7.54322 7.62658 7.76512 7.97588 8.15390 8.43843 8.97434 9.40530 10.25466 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.022394 B = 0.007287 C = 0.005771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.039776 B = 3841.604755 C = 4850.628878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.091 3.909 3 H 0.078 0.922 4 N -0.845 5.845 5 C -0.102 4.102 6 C -0.106 4.106 7 C -0.167 4.167 8 C -0.080 4.080 9 C -0.120 4.120 10 C -0.284 4.284 11 C 0.085 3.915 12 N -0.290 5.290 13 C -0.341 4.341 14 H 0.104 0.896 15 C 0.043 3.957 16 N -0.852 5.852 17 Si 0.938 3.062 18 H -0.271 1.271 19 H -0.276 1.276 20 H -0.265 1.265 21 C 0.055 3.945 22 C -0.107 4.107 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.351 0.649 27 H 0.333 0.667 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.123 0.877 33 H 0.170 0.830 34 H 0.279 0.721 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.946 2.164 2.854 8.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 H 0.096 0.904 4 N -0.375 5.375 5 C -0.141 4.141 6 C -0.108 4.108 7 C -0.186 4.186 8 C -0.098 4.098 9 C -0.126 4.126 10 C -0.308 4.308 11 C -0.049 4.049 12 N 0.047 4.953 13 C -0.468 4.468 14 H 0.121 0.879 15 C -0.166 4.166 16 N -0.484 5.484 17 Si 0.762 3.238 18 H -0.196 1.196 19 H -0.201 1.201 20 H -0.189 1.189 21 C -0.056 4.056 22 C -0.127 4.127 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.165 0.835 27 H 0.145 0.855 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.120 0.880 31 H 0.122 0.878 32 H 0.141 0.859 33 H 0.187 0.813 34 H 0.090 0.910 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.165 2.366 2.095 8.755 hybrid contribution 0.696 -1.412 0.252 1.595 sum -7.468 0.954 2.347 7.887 Atomic orbital electron populations 1.21808 0.95127 1.01578 1.01527 1.21417 0.94349 0.98447 0.87928 0.90350 1.59047 1.17723 1.20678 1.40074 1.21279 0.92802 1.00657 0.99364 1.19071 0.93592 0.96359 1.01809 1.20318 0.94052 0.99180 1.05093 1.20246 0.92718 0.97375 0.99500 1.19048 0.93579 0.96234 1.03750 1.21298 0.92874 1.02397 1.14262 1.22097 0.90786 0.94649 0.97387 1.40215 1.03053 1.16386 1.35651 1.19793 1.03391 0.98967 1.24653 0.87865 1.25481 0.95344 1.00283 0.95447 1.69888 1.08611 1.35637 1.34293 0.85748 0.78354 0.80271 0.79390 1.19639 1.20069 1.18924 1.18318 0.89965 0.93443 1.03900 1.19638 0.90341 0.99497 1.03216 0.92568 0.92230 0.93078 0.83494 0.85518 0.92101 0.91500 0.87951 0.87817 0.85899 0.81276 0.91002 0.88068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.49 37.15 0.35 -1.26 16 2 C 0.09 1.25 3.40 -67.72 -0.23 1.02 16 3 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 4 N -0.85 -12.64 9.11 -4.67 -0.04 -12.68 16 5 C -0.10 -1.48 4.98 -27.88 -0.14 -1.62 16 6 C -0.11 -1.95 4.73 -104.56 -0.50 -2.44 16 7 C -0.17 -3.07 9.67 -39.56 -0.38 -3.46 16 8 C -0.08 -1.61 10.10 -39.27 -0.40 -2.01 16 9 C -0.12 -2.82 6.37 -105.10 -0.67 -3.49 16 10 C -0.28 -6.70 11.09 -37.57 -0.42 -7.11 16 11 C 0.09 2.17 9.89 -16.63 -0.16 2.01 16 12 N -0.29 -7.60 2.92 -59.73 -0.17 -7.78 16 13 C -0.34 -8.83 9.93 -14.92 -0.15 -8.97 16 14 H 0.10 2.55 7.85 -52.48 -0.41 2.14 16 15 C 0.04 1.06 5.35 -17.49 -0.09 0.96 16 16 N -0.85 -21.88 10.84 55.49 0.60 -21.28 16 17 Si 0.94 18.89 29.57 -169.99 -5.03 13.87 16 18 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 21 C 0.06 1.35 6.75 -83.84 -0.57 0.79 16 22 C -0.11 -2.25 8.24 -39.44 -0.33 -2.57 16 23 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 24 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.35 5.99 7.31 -39.29 -0.29 5.70 16 27 H 0.33 4.58 9.00 -39.29 -0.35 4.23 16 28 H 0.06 0.86 8.08 -51.93 -0.42 0.45 16 29 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 30 H 0.10 1.61 8.06 -52.49 -0.42 1.18 16 31 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 32 H 0.12 2.55 8.06 -52.49 -0.42 2.12 16 33 H 0.17 4.31 6.34 -52.48 -0.33 3.98 16 34 H 0.28 6.63 8.31 -40.82 -0.34 6.29 16 35 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 293.53 15.07 4.42 4.42 Total: -1.00 -27.07 293.53 -8.63 -35.71 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -4.74 Total: 15.91 kcal Atomic # 6 Polarization: -24.49 SS G_CDS: -3.67 Total: -28.17 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.39 Total: -41.74 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.07 -8.63 -35.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229747512.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.164 kcal (2) G-P(sol) polarization free energy of solvation -27.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds