Wall clock time and date at job start Mon Mar 30 2020 07:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.47275 * 2 1 4 4 C 1.46893 * 111.00135 * 75.84459 * 3 2 1 5 5 C 1.50696 * 109.47579 * 199.29170 * 4 3 2 6 6 H 1.08009 * 119.99318 * 355.06131 * 5 4 3 7 7 C 1.37870 * 120.00496 * 175.05623 * 5 4 3 8 8 N 1.31516 * 119.99980 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00094 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47206 * 90.00601 * 9 7 5 11 11 H 1.48501 * 109.47253 * 210.00205 * 9 7 5 12 12 H 1.48495 * 109.47362 * 330.00172 * 9 7 5 13 13 C 1.39030 * 110.99706 * 199.80312 * 3 2 1 14 14 C 1.38884 * 120.17251 * 295.76971 * 13 3 2 15 15 C 1.38009 * 120.06925 * 179.72468 * 14 13 3 16 16 C 1.38570 * 120.42570 * 0.55707 * 15 14 13 17 17 C 1.50703 * 119.83264 * 179.74513 * 16 15 14 18 18 C 1.37795 * 120.34222 * 359.71951 * 16 15 14 19 19 C 1.39730 * 119.92270 * 0.02562 * 18 16 15 20 20 C 1.43193 * 120.21095 * 180.02562 * 19 18 16 21 21 N 4.44221 * 93.53508 * 317.57605 * 2 1 3 22 22 H 1.09000 * 109.47224 * 54.85775 * 1 2 3 23 23 H 1.08998 * 109.47426 * 174.86030 * 1 2 3 24 24 H 1.08999 * 109.46862 * 294.85402 * 1 2 3 25 25 H 1.08998 * 109.46598 * 239.99690 * 2 1 3 26 26 H 1.08998 * 109.46762 * 120.00310 * 2 1 3 27 27 H 1.09005 * 109.46811 * 79.29453 * 4 3 2 28 28 H 1.08998 * 109.47215 * 319.29513 * 4 3 2 29 29 H 0.96999 * 120.00093 * 179.97438 * 8 7 5 30 30 H 1.08000 * 119.95952 * 359.97438 * 14 13 3 31 31 H 1.08010 * 119.79101 * 180.27589 * 15 14 13 32 32 H 1.08996 * 109.46934 * 269.97576 * 17 16 15 33 33 H 1.09004 * 109.46677 * 29.97303 * 17 16 15 34 34 H 1.08994 * 109.47213 * 149.97300 * 17 16 15 35 35 H 1.07996 * 120.04198 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8790 1.9931 1.3297 5 6 1.9299 3.4939 1.2037 6 1 2.1340 3.9487 0.2456 7 6 1.7160 4.2864 2.3114 8 7 1.4680 3.7326 3.4782 9 14 1.7799 6.1468 2.1553 10 1 0.4255 6.6632 1.8325 11 1 2.2413 6.7357 3.4381 12 1 2.7235 6.5205 1.0714 13 6 3.3372 1.4475 -0.4397 14 6 4.3474 0.8387 0.2934 15 6 5.6537 0.8973 -0.1480 16 6 5.9699 1.5715 -1.3166 17 6 7.4016 1.6320 -1.7833 18 6 4.9820 2.1866 -2.0545 19 6 3.6539 2.1318 -1.6237 20 6 2.6223 2.7683 -2.3860 21 7 1.8039 3.2729 -2.9911 22 1 -0.3634 0.5915 -0.8403 23 1 -0.3634 -1.0235 -0.0921 24 1 -0.3633 0.4319 0.9325 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.6922 1.6546 1.9719 28 1 0.9247 1.6972 1.7654 29 1 1.3179 4.2901 4.2576 30 1 4.1099 0.3155 1.2079 31 1 6.4352 0.4184 0.4234 32 1 7.8850 2.5121 -1.3594 33 1 7.9284 0.7353 -1.4565 34 1 7.4269 1.6921 -2.8713 35 1 5.2339 2.7103 -2.9648 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233447461.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:27 Heat of formation + Delta-G solvation = 35.284926 kcal Electronic energy + Delta-G solvation = -17274.977796 eV Core-core repulsion = 14658.139475 eV Total energy + Delta-G solvation = -2616.838321 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 5.55 seconds Orbital eigenvalues (eV) -41.04826 -38.14547 -37.32750 -34.82443 -33.26393 -32.17902 -31.19053 -28.98162 -26.65776 -24.68726 -24.56090 -23.36469 -21.34009 -19.07364 -18.62430 -17.44716 -16.93667 -16.54876 -15.82485 -15.43855 -15.17325 -14.89033 -14.63920 -14.29394 -14.11654 -14.05059 -13.73595 -13.52382 -13.19420 -13.01779 -12.94081 -12.71574 -12.58809 -12.44406 -12.33085 -12.15104 -12.06491 -11.61879 -11.37032 -10.63509 -9.83599 -9.34177 -9.18367 -8.23232 -6.30140 -0.06197 0.41879 1.33415 1.35140 1.45464 1.83011 2.09197 2.35499 2.92457 3.03720 3.12205 3.18199 4.01188 4.08538 4.12672 4.31351 4.42504 4.51444 4.56321 4.62476 4.77790 4.85202 5.00816 5.02890 5.07226 5.14124 5.19511 5.27907 5.35576 5.39162 5.55239 5.63119 5.64861 5.94567 6.01750 6.41404 6.58752 6.71313 6.84238 7.37686 8.86794 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.008792 C = 0.007702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.318810 B = 3184.117225 C = 3634.430017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.059 3.941 3 N -0.532 5.532 4 C 0.215 3.785 5 C -0.515 4.515 6 H 0.045 0.955 7 C 0.012 3.988 8 N -0.926 5.926 9 Si 0.950 3.050 10 H -0.279 1.279 11 H -0.273 1.273 12 H -0.272 1.272 13 C 0.150 3.850 14 C -0.159 4.159 15 C -0.072 4.072 16 C -0.098 4.098 17 C -0.107 4.107 18 C -0.065 4.065 19 C -0.043 4.043 20 C 0.293 3.707 21 N -0.477 5.477 22 H 0.043 0.957 23 H 0.086 0.914 24 H 0.037 0.963 25 H 0.081 0.919 26 H 0.041 0.959 27 H -0.013 1.013 28 H 0.017 0.983 29 H 0.265 0.735 30 H 0.123 0.877 31 H 0.157 0.843 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.969 -8.773 -7.638 16.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.067 4.067 3 N -0.254 5.254 4 C 0.091 3.909 5 C -0.553 4.553 6 H 0.063 0.937 7 C -0.186 4.186 8 N -0.566 5.566 9 Si 0.776 3.224 10 H -0.205 1.205 11 H -0.198 1.198 12 H -0.197 1.197 13 C 0.052 3.948 14 C -0.179 4.179 15 C -0.091 4.091 16 C -0.098 4.098 17 C -0.163 4.163 18 C -0.086 4.086 19 C -0.047 4.047 20 C -0.021 4.021 21 N -0.153 5.153 22 H 0.062 0.938 23 H 0.104 0.896 24 H 0.056 0.944 25 H 0.099 0.901 26 H 0.059 0.941 27 H 0.005 0.995 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.141 0.859 31 H 0.175 0.825 32 H 0.096 0.904 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 10.337 -7.689 -8.709 15.551 hybrid contribution -0.019 0.568 1.265 1.387 sum 10.319 -7.121 -7.443 14.580 Atomic orbital electron populations 1.21698 0.94732 1.02009 1.01035 1.22117 0.96505 0.87153 1.00955 1.59506 1.17420 1.18636 1.29821 1.19512 0.95142 0.93467 0.82742 1.21314 1.47415 0.92309 0.94297 0.93704 1.25635 0.95095 1.02923 0.94965 1.70022 1.49676 1.36850 1.00083 0.85674 0.78362 0.80658 0.77756 1.20546 1.19781 1.19703 1.18908 0.89679 0.93950 0.92229 1.21705 0.94133 1.01924 1.00147 1.21432 0.95484 0.96793 0.95403 1.20108 0.97231 0.97611 0.94854 1.20824 0.89354 1.03725 1.02388 1.21199 0.88923 0.98036 1.00451 1.16284 0.90478 1.02754 0.95206 1.25763 0.92493 0.92224 0.91581 1.81056 1.10005 1.11208 1.13053 0.93758 0.89555 0.94429 0.90065 0.94094 0.99531 0.96541 0.92604 0.85910 0.82537 0.90414 0.89636 0.90116 0.83001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.64 9.96 71.98 0.72 -3.92 16 2 C 0.06 2.04 5.25 86.30 0.45 2.49 16 3 N -0.53 -22.87 3.71 -698.81 -2.59 -25.46 16 4 C 0.22 11.16 4.48 85.56 0.38 11.54 16 5 C -0.51 -29.72 8.95 25.60 0.23 -29.49 16 6 H 0.04 2.68 7.81 -2.91 -0.02 2.65 16 7 C 0.01 0.72 5.46 84.65 0.46 1.18 16 8 N -0.93 -55.08 13.29 21.44 0.28 -54.80 16 9 Si 0.95 45.98 29.54 68.60 2.03 48.01 16 10 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 13 C 0.15 5.67 4.17 38.67 0.16 5.83 16 14 C -0.16 -5.06 8.53 22.37 0.19 -4.87 16 15 C -0.07 -1.71 9.68 22.29 0.22 -1.50 16 16 C -0.10 -2.13 5.87 -19.89 -0.12 -2.25 16 17 C -0.11 -1.41 10.00 71.24 0.71 -0.70 16 18 C -0.07 -1.72 9.39 22.53 0.21 -1.50 16 19 C -0.04 -1.52 5.76 -21.16 -0.12 -1.64 16 20 C 0.29 11.94 14.81 88.33 1.31 13.24 16 21 N -0.48 -21.06 18.54 19.00 0.35 -20.71 16 22 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.04 1.42 6.90 -2.39 -0.02 1.41 16 25 H 0.08 2.47 7.91 -2.39 -0.02 2.45 16 26 H 0.04 1.36 7.95 -2.39 -0.02 1.34 16 27 H -0.01 -0.69 6.68 -2.38 -0.02 -0.71 16 28 H 0.02 0.93 6.57 -2.39 -0.02 0.91 16 29 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 30 H 0.12 3.93 7.39 -2.91 -0.02 3.91 16 31 H 0.16 2.63 8.06 -2.91 -0.02 2.60 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 34 H 0.08 0.86 8.08 -2.39 -0.02 0.84 16 35 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -69.13 304.94 5.95 -63.17 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: 1.08 Total: 1.36 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 4.81 Total: -11.57 kcal Atomic # 7 Polarization: -99.01 SS G_CDS: -1.96 Total: -100.96 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -69.13 5.95 -63.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233447461.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.459 kcal (2) G-P(sol) polarization free energy of solvation -69.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.55 seconds