Wall clock time and date at job start Mon Mar 30 2020 05:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38572 * 119.83268 * 2 1 4 4 C 1.38014 * 120.42671 * 180.02562 * 3 2 1 5 5 C 1.38884 * 120.06920 * 359.97438 * 4 3 2 6 6 N 1.39031 * 120.16981 * 180.02562 * 5 4 3 7 7 C 1.46899 * 110.99780 * 67.20561 * 6 5 4 8 8 C 1.46897 * 111.00200 * 303.25458 * 6 5 4 9 9 H 1.08998 * 109.47633 * 64.99745 * 8 6 5 10 10 C 1.52996 * 109.47153 * 185.00217 * 8 6 5 11 11 C 1.50706 * 109.46816 * 304.99965 * 8 6 5 12 12 H 1.07998 * 119.99784 * 359.97438 * 11 8 6 13 13 C 1.37875 * 120.00108 * 180.02562 * 11 8 6 14 14 N 1.31516 * 120.00022 * 0.02562 * 13 11 8 15 15 Si 1.86797 * 120.00369 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.46732 * 59.99668 * 15 13 11 17 17 H 1.48496 * 109.47353 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47029 * 300.00219 * 15 13 11 19 19 C 1.40364 * 119.65594 * 0.27672 * 5 4 3 20 20 C 1.43195 * 120.20607 * 179.69750 * 19 5 4 21 21 N 4.80154 * 134.59486 * 180.27035 * 2 1 3 22 22 C 1.37802 * 119.82651 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47484 * 89.99732 * 1 2 3 24 24 H 1.08998 * 109.47425 * 210.00093 * 1 2 3 25 25 H 1.09003 * 109.47109 * 329.99840 * 1 2 3 26 26 H 1.08000 * 119.78265 * 359.97438 * 3 2 1 27 27 H 1.08003 * 119.96279 * 179.97438 * 4 3 2 28 28 H 1.08997 * 109.47295 * 60.00389 * 7 6 5 29 29 H 1.09001 * 109.47186 * 179.97438 * 7 6 5 30 30 H 1.08999 * 109.47242 * 299.99661 * 7 6 5 31 31 H 1.09004 * 109.47474 * 178.32362 * 10 8 6 32 32 H 1.09001 * 109.47014 * 298.32329 * 10 8 6 33 33 H 1.09005 * 109.47610 * 58.32441 * 10 8 6 34 34 H 0.96996 * 120.00310 * 180.02562 * 14 13 11 35 35 H 1.07992 * 120.03878 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1963 1.2021 0.0000 4 6 3.5763 1.2164 -0.0005 5 6 4.2846 0.0217 -0.0005 6 7 5.6749 0.0337 -0.0005 7 6 6.1967 0.5696 1.2638 8 6 6.1949 0.7902 -1.1473 9 1 5.9106 1.8380 -1.0505 10 6 7.7202 0.6769 -1.1838 11 6 5.6189 0.2292 -2.4220 12 1 4.9353 -0.6060 -2.3839 13 6 5.9654 0.7816 -3.6368 14 7 6.7990 1.7977 -3.6833 15 14 5.2520 0.0858 -5.2168 16 1 3.7715 0.1958 -5.1819 17 1 5.7785 0.8498 -6.3762 18 1 5.6394 -1.3418 -5.3482 19 6 3.5896 -1.1977 -0.0059 20 6 4.3080 -2.4364 -0.0125 21 7 4.8780 -3.4191 -0.0161 22 6 2.1923 -1.1955 0.0005 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6500 2.1337 -0.0004 27 1 4.1060 2.1576 -0.0009 28 1 5.8526 -0.0512 2.0911 29 1 7.2864 0.5673 1.2372 30 1 5.8384 1.5897 1.4015 31 1 8.1039 1.2134 -2.0516 32 1 8.1385 1.1096 -0.2750 33 1 8.0051 -0.3732 -1.2508 34 1 7.0425 2.1866 -4.5379 35 1 1.6502 -2.1294 0.0005 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235064356.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:33:31 Heat of formation + Delta-G solvation = 43.499126 kcal Electronic energy + Delta-G solvation = -17527.526198 eV Core-core repulsion = 14911.044072 eV Total energy + Delta-G solvation = -2616.482126 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.05170 -38.23384 -37.31822 -34.98176 -32.94670 -32.08076 -30.73831 -28.41317 -26.78215 -25.69306 -24.52788 -23.04410 -21.16002 -19.03442 -18.49421 -17.47754 -16.78297 -16.52281 -15.78285 -15.32548 -14.98935 -14.91310 -14.64495 -14.11865 -14.04400 -13.87897 -13.81781 -13.70760 -13.00929 -12.87055 -12.78560 -12.65971 -12.52470 -12.40808 -12.24967 -12.16046 -12.06467 -11.75127 -10.97751 -10.55603 -9.79943 -9.30432 -9.11101 -8.13488 -6.22956 -0.03259 0.47357 1.37984 1.40290 1.47029 1.83073 2.10787 2.39633 2.94991 3.09643 3.17576 3.23110 4.05058 4.10819 4.32967 4.46300 4.48759 4.59686 4.67958 4.76645 4.83359 4.93448 5.02609 5.06054 5.07354 5.10380 5.24424 5.40486 5.41494 5.57913 5.67301 5.69744 5.76724 5.97116 6.22462 6.43109 6.61171 6.71441 6.91456 7.44869 8.91885 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.017346 B = 0.009507 C = 0.008314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.787477 B = 2944.563803 C = 3367.010091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.102 4.102 3 C -0.074 4.074 4 C -0.154 4.154 5 C 0.164 3.836 6 N -0.535 5.535 7 C 0.031 3.969 8 C 0.226 3.774 9 H -0.011 1.011 10 C -0.125 4.125 11 C -0.511 4.511 12 H 0.046 0.954 13 C 0.022 3.978 14 N -0.914 5.914 15 Si 0.943 3.057 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.283 1.283 19 C -0.048 4.048 20 C 0.295 3.705 21 N -0.478 5.478 22 C -0.066 4.066 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.153 0.847 27 H 0.118 0.882 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.020 0.980 34 H 0.263 0.737 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.293 1.355 8.591 15.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.102 4.102 3 C -0.093 4.093 4 C -0.174 4.174 5 C 0.066 3.934 6 N -0.257 5.257 7 C -0.115 4.115 8 C 0.122 3.878 9 H 0.007 0.993 10 C -0.183 4.183 11 C -0.550 4.550 12 H 0.064 0.936 13 C -0.178 4.178 14 N -0.553 5.553 15 Si 0.770 3.230 16 H -0.192 1.192 17 H -0.205 1.205 18 H -0.209 1.209 19 C -0.053 4.053 20 C -0.019 4.019 21 N -0.154 5.154 22 C -0.087 4.087 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.171 0.829 27 H 0.136 0.864 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.114 -0.525 8.413 13.949 hybrid contribution 0.068 0.879 -1.100 1.410 sum -11.046 0.354 7.313 13.252 Atomic orbital electron populations 1.20808 0.87859 1.04321 1.03235 1.20075 0.98041 0.91551 1.00511 1.21404 0.92808 0.99240 0.95863 1.21614 0.95870 0.97506 1.02416 1.18754 0.89257 0.91672 0.93668 1.59546 1.04849 1.56868 1.04420 1.22417 1.01039 0.97935 0.90100 1.19113 0.92246 0.90018 0.86461 0.99313 1.21707 0.97364 0.98974 1.00280 1.21202 1.26600 1.15749 0.91420 0.93594 1.25485 0.95509 0.95293 1.01479 1.69955 1.34756 1.24362 1.26248 0.85829 0.79330 0.78114 0.79764 1.19170 1.20481 1.20947 1.16248 0.92896 0.85435 1.10688 1.25744 0.91948 0.92221 0.91967 1.81061 1.09254 1.13887 1.11218 1.21172 0.90047 1.00004 0.97430 0.90580 0.90059 0.89779 0.82941 0.86387 0.91069 0.90938 0.94716 0.91556 0.94461 0.96040 0.92819 0.83028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.00 71.23 0.71 -0.82 16 2 C -0.10 -2.35 5.87 -19.89 -0.12 -2.47 16 3 C -0.07 -1.90 9.68 22.30 0.22 -1.68 16 4 C -0.15 -5.16 8.61 22.37 0.19 -4.96 16 5 C 0.16 6.27 3.36 38.67 0.13 6.40 16 6 N -0.53 -22.72 3.98 -699.44 -2.78 -25.51 16 7 C 0.03 1.08 9.14 127.69 1.17 2.25 16 8 C 0.23 11.18 1.70 44.17 0.08 11.25 16 9 H -0.01 -0.56 7.14 -2.39 -0.02 -0.57 16 10 C -0.13 -6.11 8.74 71.98 0.63 -5.48 16 11 C -0.51 -27.94 8.03 25.60 0.21 -27.73 16 12 H 0.05 2.60 7.02 -2.91 -0.02 2.58 16 13 C 0.02 1.19 5.30 84.65 0.45 1.64 16 14 N -0.91 -51.42 11.30 21.45 0.24 -51.18 16 15 Si 0.94 44.13 29.54 68.60 2.03 46.15 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 18 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 19 C -0.05 -1.72 5.53 -21.16 -0.12 -1.83 16 20 C 0.30 11.84 14.81 88.33 1.31 13.14 16 21 N -0.48 -20.68 18.54 19.00 0.35 -20.33 16 22 C -0.07 -1.77 9.39 22.53 0.21 -1.56 16 23 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.08 0.94 8.08 -2.39 -0.02 0.93 16 25 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 26 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 27 H 0.12 4.08 7.05 -2.91 -0.02 4.06 16 28 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.07 2.47 6.17 -2.39 -0.01 2.46 16 30 H 0.03 1.11 7.53 -2.39 -0.02 1.09 16 31 H 0.07 3.55 6.02 -2.38 -0.01 3.54 16 32 H 0.04 1.57 6.43 -2.39 -0.02 1.55 16 33 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.26 14.15 8.31 -92.71 -0.77 13.37 16 35 H 0.15 3.22 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -64.49 297.23 5.99 -58.50 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: 1.09 Total: 4.22 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 5.06 Total: -11.86 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -2.19 Total: -97.01 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -64.49 5.99 -58.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235064356.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.002 kcal (2) G-P(sol) polarization free energy of solvation -64.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds