Wall clock time and date at job start Mon Mar 30 2020 05:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46960 * 2 1 4 4 N 1.30105 * 124.95136 * 269.97683 * 3 2 1 5 5 C 1.35790 * 109.64670 * 179.73712 * 4 3 2 6 6 C 1.39735 * 133.59667 * 179.47614 * 5 4 3 7 7 C 1.36603 * 119.88474 * 180.48799 * 6 5 4 8 8 C 1.38782 * 120.66847 * 0.26358 * 7 6 5 9 9 C 1.50698 * 119.77576 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.46923 * 89.99823 * 9 8 7 11 11 H 1.07998 * 120.00372 * 0.02562 * 10 9 8 12 12 C 1.37884 * 120.00030 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99888 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 119.99990 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47311 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47174 * 120.00082 * 14 12 10 17 17 H 1.48510 * 109.47168 * 239.99865 * 14 12 10 18 18 C 1.37848 * 120.45006 * 0.04028 * 8 7 6 19 19 C 1.38834 * 119.69217 * 359.97438 * 18 8 7 20 20 N 1.36041 * 124.95031 * 90.00302 * 3 2 1 21 21 C 1.46497 * 126.34790 * 0.02562 * 20 3 2 22 22 H 1.09000 * 109.46929 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46629 * 299.99682 * 1 2 3 24 24 H 1.09000 * 109.46928 * 59.99739 * 1 2 3 25 25 H 1.08996 * 109.47470 * 240.00350 * 2 1 3 26 26 H 1.08996 * 109.47185 * 119.99816 * 2 1 3 27 27 H 1.08002 * 120.06112 * 0.77402 * 6 5 4 28 28 H 1.08002 * 119.67092 * 180.27749 * 7 6 5 29 29 H 1.08998 * 109.47306 * 210.00056 * 9 8 7 30 30 H 1.09003 * 109.46828 * 330.00155 * 9 8 7 31 31 H 0.96998 * 119.99903 * 180.02562 * 13 12 10 32 32 H 1.08002 * 120.15797 * 179.97438 * 18 8 7 33 33 H 1.09001 * 109.47650 * 269.96152 * 21 20 3 34 34 H 1.09002 * 109.47299 * 29.96458 * 21 20 3 35 35 H 1.09004 * 109.47213 * 149.96205 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2812 2.1234 -1.0664 5 6 2.7120 3.3603 -0.7080 6 6 3.1174 4.4861 -1.4297 7 6 3.5161 5.6121 -0.7670 8 6 3.5288 5.6500 0.6202 9 6 3.9719 6.9030 1.3307 10 6 2.7802 7.7947 1.5667 11 1 1.7999 7.4849 1.2357 12 6 2.9413 9.0062 2.2051 13 7 4.1350 9.3837 2.6077 14 14 1.4640 10.1111 2.4983 15 1 0.2444 9.4620 1.9537 16 1 1.2962 10.3367 3.9564 17 1 1.6771 11.4135 1.8172 18 6 3.1391 4.5492 1.3528 19 6 2.7310 3.3958 0.6965 20 7 2.2921 2.1556 1.1151 21 6 2.1362 1.7125 2.5027 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.1111 4.4676 -2.5095 28 1 3.8245 6.4818 -1.3283 29 1 4.4227 6.6383 2.2871 30 1 4.7035 7.4290 0.7173 31 1 4.2483 10.2357 3.0571 32 1 3.1512 4.5838 2.4322 33 1 1.1287 1.9454 2.8475 34 1 2.3006 0.6366 2.5612 35 1 2.8632 2.2259 3.1320 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258487407.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:48 Heat of formation + Delta-G solvation = 52.875778 kcal Electronic energy + Delta-G solvation = -16842.728127 eV Core-core repulsion = 14226.652603 eV Total energy + Delta-G solvation = -2616.075524 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.75018 -37.33846 -34.05311 -33.72347 -32.80368 -30.37235 -29.47643 -26.77894 -26.52668 -24.36803 -22.84780 -21.40959 -20.57839 -19.38864 -16.81504 -16.45677 -16.23037 -15.66471 -14.91060 -14.39145 -14.29373 -13.86430 -13.41128 -13.22302 -13.04221 -12.65113 -12.62477 -12.26772 -11.74181 -11.61324 -11.31392 -11.27875 -10.96589 -10.71772 -10.55662 -10.49646 -9.95195 -9.71656 -9.42696 -9.31955 -8.43854 -7.71926 -7.30448 -6.05145 -4.09099 1.55522 2.15531 2.88273 3.19450 3.28580 3.36517 3.42162 4.28501 4.39012 4.57247 4.71237 4.76531 5.02654 5.05876 5.17595 5.28933 5.31211 5.38917 5.59682 5.62020 5.72444 5.81606 6.00349 6.02420 6.09536 6.14395 6.51508 6.73481 7.01677 7.10315 7.18784 7.46317 7.51153 7.61507 7.83358 7.90861 8.27922 8.32013 8.96495 9.54808 11.04357 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.032907 B = 0.005238 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.678136 B = 5344.234289 C = 5588.792884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.040 4.040 3 C 0.258 3.742 4 N -0.492 5.492 5 C 0.020 3.980 6 C -0.073 4.073 7 C -0.120 4.120 8 C -0.013 4.013 9 C 0.050 3.950 10 C -0.510 4.510 11 H 0.058 0.942 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.894 3.106 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.283 1.283 18 C -0.127 4.127 19 C 0.055 3.945 20 N -0.496 5.496 21 C 0.082 3.918 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.064 0.936 25 H 0.095 0.905 26 H 0.078 0.922 27 H 0.119 0.881 28 H 0.127 0.873 29 H 0.029 0.971 30 H 0.033 0.967 31 H 0.261 0.739 32 H 0.117 0.883 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.181 -17.066 -1.636 17.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.080 4.080 3 C -0.007 4.007 4 N -0.212 5.212 5 C -0.096 4.096 6 C -0.093 4.093 7 C -0.140 4.140 8 C -0.014 4.014 9 C 0.013 3.987 10 C -0.549 4.549 11 H 0.076 0.924 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.722 3.278 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.149 4.149 19 C -0.052 4.052 20 N -0.188 5.188 21 C -0.061 4.061 22 H 0.084 0.916 23 H 0.073 0.927 24 H 0.083 0.917 25 H 0.114 0.886 26 H 0.097 0.903 27 H 0.137 0.863 28 H 0.145 0.855 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.135 0.865 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.184 -17.211 -2.256 17.855 hybrid contribution -0.707 1.001 1.200 1.716 sum -4.890 -16.210 -1.055 16.964 Atomic orbital electron populations 1.21730 0.93812 1.02098 1.02807 1.20033 0.96524 0.87430 1.03965 1.23321 1.00443 0.95833 0.81103 1.70240 1.19976 1.03622 1.27388 1.18870 1.06786 0.93457 0.90535 1.19912 0.99674 0.90713 0.98977 1.20697 1.01589 0.97298 0.94423 1.20457 0.92523 0.95199 0.93249 1.18359 0.96922 0.88136 0.95294 1.21101 0.93866 1.02243 1.37651 0.92379 1.25003 0.95901 0.97804 0.95579 1.69965 1.21587 1.21910 1.39852 0.86492 0.82924 0.80535 0.77853 1.19680 1.20982 1.20872 1.19810 1.05410 0.90338 0.99301 1.18947 1.03844 0.87249 0.95149 1.44956 1.55604 1.11309 1.06930 1.21875 1.03177 1.01008 0.80038 0.91638 0.92737 0.91733 0.88635 0.90337 0.86264 0.85527 0.95303 0.94922 0.92888 0.86544 0.91146 0.90037 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.89 37.16 0.37 -0.92 16 2 C -0.04 -0.40 6.23 -27.88 -0.17 -0.57 16 3 C 0.26 3.92 7.11 -154.82 -1.10 2.82 16 4 N -0.49 -9.12 11.27 -8.23 -0.09 -9.21 16 5 C 0.02 0.40 7.23 -84.70 -0.61 -0.21 16 6 C -0.07 -1.40 10.05 -39.61 -0.40 -1.80 16 7 C -0.12 -2.44 9.61 -39.97 -0.38 -2.82 16 8 C -0.01 -0.28 5.07 -104.56 -0.53 -0.81 16 9 C 0.05 1.27 5.09 -29.04 -0.15 1.12 16 10 C -0.51 -14.25 9.09 -34.44 -0.31 -14.56 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 14 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 C -0.13 -2.62 9.69 -39.50 -0.38 -3.00 16 19 C 0.06 1.07 6.87 -83.99 -0.58 0.49 16 20 N -0.50 -7.71 3.21 -118.50 -0.38 -8.09 16 21 C 0.08 0.86 10.96 59.85 0.66 1.52 16 22 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.08 0.58 7.01 -51.93 -0.36 0.22 16 27 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 28 H 0.13 2.40 8.06 -52.49 -0.42 1.98 16 29 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 30 H 0.03 0.87 8.08 -51.93 -0.42 0.45 16 31 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.12 2.28 8.06 -52.49 -0.42 1.85 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.61 6.99 -51.93 -0.36 0.24 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 300.23 15.07 4.52 4.52 Total: -1.00 -32.60 300.23 -8.84 -41.44 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -4.91 Total: -2.47 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -3.69 Total: -17.19 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.26 Total: -42.77 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.60 -8.84 -41.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258487407.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.318 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds