Wall clock time and date at job start Mon Mar 30 2020 05:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50703 * 109.46960 * 2 1 4 4 N 1.30105 * 124.95136 * 269.97683 * 3 2 1 5 5 C 1.35790 * 109.64670 * 179.73712 * 4 3 2 6 6 C 1.39735 * 133.59667 * 179.47614 * 5 4 3 7 7 C 1.36603 * 119.88474 * 180.48799 * 6 5 4 8 8 C 1.38782 * 120.66847 * 0.26358 * 7 6 5 9 9 C 1.50698 * 119.77576 * 180.02562 * 8 7 6 10 10 C 1.50699 * 109.46923 * 89.99823 * 9 8 7 11 11 H 1.07998 * 120.00372 * 0.02562 * 10 9 8 12 12 C 1.37884 * 120.00030 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99888 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 119.99990 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47311 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47174 * 120.00082 * 14 12 10 17 17 H 1.48510 * 109.47168 * 239.99865 * 14 12 10 18 18 C 1.37848 * 120.45006 * 0.04028 * 8 7 6 19 19 C 1.38834 * 119.69217 * 359.97438 * 18 8 7 20 20 N 1.36041 * 124.95031 * 90.00302 * 3 2 1 21 21 C 1.46497 * 126.34790 * 0.02562 * 20 3 2 22 22 H 1.09000 * 109.46929 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46629 * 299.99682 * 1 2 3 24 24 H 1.09000 * 109.46928 * 59.99739 * 1 2 3 25 25 H 1.08996 * 109.47470 * 240.00350 * 2 1 3 26 26 H 1.08996 * 109.47185 * 119.99816 * 2 1 3 27 27 H 1.08002 * 120.06112 * 0.77402 * 6 5 4 28 28 H 1.08002 * 119.67092 * 180.27749 * 7 6 5 29 29 H 1.08998 * 109.47306 * 210.00056 * 9 8 7 30 30 H 1.09003 * 109.46828 * 330.00155 * 9 8 7 31 31 H 0.96998 * 119.99903 * 180.02562 * 13 12 10 32 32 H 1.08002 * 120.15797 * 179.97438 * 18 8 7 33 33 H 1.09001 * 109.47650 * 269.96152 * 21 20 3 34 34 H 1.09002 * 109.47299 * 29.96458 * 21 20 3 35 35 H 1.09004 * 109.47213 * 149.96205 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2812 2.1234 -1.0664 5 6 2.7120 3.3603 -0.7080 6 6 3.1174 4.4861 -1.4297 7 6 3.5161 5.6121 -0.7670 8 6 3.5288 5.6500 0.6202 9 6 3.9719 6.9030 1.3307 10 6 2.7802 7.7947 1.5667 11 1 1.7999 7.4849 1.2357 12 6 2.9413 9.0062 2.2051 13 7 4.1350 9.3837 2.6077 14 14 1.4640 10.1111 2.4983 15 1 0.2444 9.4620 1.9537 16 1 1.2962 10.3367 3.9564 17 1 1.6771 11.4135 1.8172 18 6 3.1391 4.5492 1.3528 19 6 2.7310 3.3958 0.6965 20 7 2.2921 2.1556 1.1151 21 6 2.1362 1.7125 2.5027 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.1111 4.4676 -2.5095 28 1 3.8245 6.4818 -1.3283 29 1 4.4227 6.6383 2.2871 30 1 4.7035 7.4290 0.7173 31 1 4.2483 10.2357 3.0571 32 1 3.1512 4.5838 2.4322 33 1 1.1287 1.9454 2.8475 34 1 2.3006 0.6366 2.5612 35 1 2.8632 2.2259 3.1320 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258487407.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:48 Heat of formation + Delta-G solvation = 34.550159 kcal Electronic energy + Delta-G solvation = -16843.522785 eV Core-core repulsion = 14226.652603 eV Total energy + Delta-G solvation = -2616.870183 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.08700 -38.86614 -35.53443 -34.99312 -34.31729 -32.06429 -30.96042 -28.31017 -27.78547 -25.66980 -24.53036 -22.72866 -22.16619 -20.59725 -18.51502 -18.16331 -17.71174 -16.86284 -16.62040 -15.97399 -15.33103 -15.00215 -14.81220 -14.53290 -14.45651 -14.13026 -13.62303 -13.46571 -13.34728 -13.26273 -12.68745 -12.57358 -12.42352 -12.28695 -12.16791 -11.97776 -11.60417 -11.40852 -11.19520 -10.89875 -10.60624 -9.17144 -8.86766 -8.18874 -6.32993 0.09762 0.61601 1.39018 1.40185 1.53280 1.71570 1.84089 2.40287 2.97653 3.10737 3.19826 3.57011 3.88965 4.10501 4.17764 4.21268 4.30487 4.39330 4.46550 4.56235 4.62261 4.65902 4.78884 4.87965 5.00466 5.07873 5.24979 5.29766 5.33150 5.35191 5.52808 5.59572 5.74645 5.98753 6.01334 6.19551 6.30456 6.78955 6.95149 7.35380 8.89278 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.032907 B = 0.005238 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.678136 B = 5344.234289 C = 5588.792884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C 0.276 3.724 4 N -0.528 5.528 5 C 0.006 3.994 6 C -0.073 4.073 7 C -0.128 4.128 8 C -0.043 4.043 9 C 0.061 3.939 10 C -0.527 4.527 11 H 0.051 0.949 12 C 0.008 3.992 13 N -0.928 5.928 14 Si 0.964 3.036 15 H -0.269 1.269 16 H -0.275 1.275 17 H -0.275 1.275 18 C -0.125 4.125 19 C 0.039 3.961 20 N -0.494 5.494 21 C 0.070 3.930 22 H 0.097 0.903 23 H 0.052 0.948 24 H 0.043 0.957 25 H 0.105 0.895 26 H 0.114 0.886 27 H 0.141 0.859 28 H 0.131 0.869 29 H 0.007 0.993 30 H 0.011 0.989 31 H 0.266 0.734 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.122 0.878 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.881 -19.393 -1.234 20.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.079 4.079 3 C 0.011 3.989 4 N -0.249 5.249 5 C -0.111 4.111 6 C -0.093 4.093 7 C -0.148 4.148 8 C -0.045 4.045 9 C 0.024 3.976 10 C -0.565 4.565 11 H 0.069 0.931 12 C -0.190 4.190 13 N -0.568 5.568 14 Si 0.788 3.212 15 H -0.193 1.193 16 H -0.200 1.200 17 H -0.201 1.201 18 C -0.146 4.146 19 C -0.070 4.070 20 N -0.185 5.185 21 C -0.071 4.071 22 H 0.115 0.885 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.123 0.877 26 H 0.132 0.868 27 H 0.159 0.841 28 H 0.149 0.851 29 H 0.025 0.975 30 H 0.029 0.971 31 H 0.075 0.925 32 H 0.136 0.864 33 H 0.102 0.898 34 H 0.140 0.860 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.888 -19.561 -1.829 20.509 hybrid contribution -0.202 1.523 1.088 1.883 sum -6.089 -18.037 -0.741 19.052 Atomic orbital electron populations 1.21713 0.92729 1.03857 1.01726 1.20374 0.97201 0.84055 1.06241 1.24452 0.97086 0.97207 0.80160 1.70282 1.22218 1.03340 1.29094 1.19246 1.06428 0.94305 0.91119 1.20084 0.98992 0.90173 1.00043 1.20688 1.02254 0.98130 0.93707 1.20172 0.95508 0.94645 0.94145 1.18077 0.95800 0.89518 0.94156 1.21366 0.94201 1.03102 1.37840 0.93051 1.25866 0.98833 0.99216 0.95121 1.70075 1.23670 1.22586 1.40471 0.85419 0.79209 0.78474 0.78081 1.19301 1.20022 1.20063 1.19740 1.04984 0.90570 0.99280 1.18932 1.04454 0.88430 0.95173 1.45306 1.54344 1.09818 1.09028 1.22297 1.04012 1.03478 0.77268 0.88472 0.92857 0.93812 0.87656 0.86763 0.84142 0.85149 0.97466 0.97058 0.92505 0.86412 0.89825 0.85956 0.89922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.89 71.98 0.71 -1.25 16 2 C -0.04 -0.62 6.23 29.85 0.19 -0.44 16 3 C 0.28 7.68 7.11 137.92 0.98 8.66 16 4 N -0.53 -18.91 11.27 -179.96 -2.03 -20.94 16 5 C 0.01 0.24 7.23 39.45 0.29 0.52 16 6 C -0.07 -2.84 10.05 22.25 0.22 -2.62 16 7 C -0.13 -5.37 9.61 22.02 0.21 -5.15 16 8 C -0.04 -1.99 5.07 -19.83 -0.10 -2.09 16 9 C 0.06 3.32 5.09 29.10 0.15 3.47 16 10 C -0.53 -30.37 9.09 25.60 0.23 -30.13 16 11 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 12 C 0.01 0.46 5.46 84.66 0.46 0.92 16 13 N -0.93 -55.63 13.29 21.45 0.28 -55.35 16 14 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 18 C -0.12 -5.25 9.69 22.32 0.22 -5.04 16 19 C 0.04 1.49 6.87 38.86 0.27 1.76 16 20 N -0.49 -14.31 3.21 -528.83 -1.70 -16.00 16 21 C 0.07 1.26 10.96 127.77 1.40 2.66 16 22 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.11 1.03 7.01 -2.39 -0.02 1.01 16 27 H 0.14 4.67 8.06 -2.91 -0.02 4.65 16 28 H 0.13 5.19 8.06 -2.91 -0.02 5.17 16 29 H 0.01 0.40 8.08 -2.39 -0.02 0.38 16 30 H 0.01 0.63 8.08 -2.39 -0.02 0.61 16 31 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 32 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.12 1.20 6.99 -2.39 -0.02 1.18 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -72.56 300.23 4.88 -67.68 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 1.07 Total: 6.87 kcal Atomic # 6 Polarization: -33.97 SS G_CDS: 5.23 Total: -28.74 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -3.44 Total: -92.29 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -72.56 4.88 -67.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258487407.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.226 kcal (2) G-P(sol) polarization free energy of solvation -72.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds