Wall clock time and date at job start Mon Mar 30 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47318 * 2 1 4 4 C 1.50703 * 109.46914 * 119.99790 * 2 1 3 5 5 N 1.30343 * 124.93239 * 299.69985 * 4 2 1 6 6 C 1.34809 * 109.89311 * 180.26384 * 5 4 2 7 7 C 1.40461 * 133.21720 * 179.97438 * 6 5 4 8 8 C 1.35783 * 120.21261 * 180.02562 * 7 6 5 9 9 C 1.41218 * 120.43004 * 359.97438 * 8 7 6 10 10 C 1.41085 * 120.04228 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00351 * 24.75060 * 10 9 8 12 12 C 1.39918 * 119.99786 * 204.74925 * 10 9 8 13 13 N 1.30863 * 120.00386 * 18.00683 * 12 10 9 14 14 Si 1.86801 * 120.00234 * 198.00193 * 12 10 9 15 15 H 1.48506 * 109.47067 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47188 * 120.00034 * 14 12 10 17 17 H 1.48499 * 109.47345 * 240.00482 * 14 12 10 18 18 C 1.40632 * 119.91174 * 0.02562 * 9 8 7 19 19 C 1.38007 * 119.49123 * 359.97438 * 18 9 8 20 20 N 1.35918 * 124.93721 * 119.99698 * 4 2 1 21 21 C 1.46500 * 126.44808 * 359.71667 * 20 4 2 22 22 H 1.08998 * 109.47219 * 300.00274 * 1 2 3 23 23 H 1.09006 * 109.46760 * 60.00649 * 1 2 3 24 24 H 1.09003 * 109.47607 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47219 * 239.99726 * 2 1 3 26 26 H 1.08998 * 109.47306 * 179.97438 * 3 2 1 27 27 H 1.09011 * 109.46950 * 299.99795 * 3 2 1 28 28 H 1.09005 * 109.47442 * 59.99384 * 3 2 1 29 29 H 1.07996 * 119.89592 * 359.97438 * 7 6 5 30 30 H 1.07993 * 119.78952 * 179.97438 * 8 7 6 31 31 H 0.96994 * 120.00706 * 179.97438 * 13 12 10 32 32 H 1.07996 * 120.25115 * 179.97438 * 18 9 8 33 33 H 1.09004 * 109.47023 * 89.99914 * 21 20 4 34 34 H 1.08997 * 109.47602 * 209.99406 * 21 20 4 35 35 H 1.08999 * 109.47186 * 330.00280 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7819 -0.3466 2.4568 6 6 2.3840 -1.1912 3.3179 7 6 2.4394 -1.2576 4.7199 8 6 3.1424 -2.2462 5.3298 9 6 3.8238 -3.2169 4.5633 10 6 4.5523 -4.2403 5.2056 11 1 4.2917 -4.5400 6.2098 12 6 5.6124 -4.8670 4.5414 13 7 6.1589 -4.2973 3.4976 14 14 6.2480 -6.5167 5.1446 15 1 5.4661 -6.9441 6.3326 16 1 6.1019 -7.5276 4.0666 17 1 7.6808 -6.3903 5.5138 18 6 3.7762 -3.1615 3.1589 19 6 3.0607 -2.1552 2.5425 20 7 2.8169 -1.8202 1.2228 21 6 3.3108 -2.5288 0.0395 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.9219 -0.5195 5.3146 30 1 3.1808 -2.2905 6.4082 31 1 6.8940 -4.7315 3.0374 32 1 4.2957 -3.9008 2.5673 33 1 4.2723 -2.1112 -0.2591 34 1 3.4310 -3.5866 0.2732 35 1 2.5966 -2.4156 -0.7761 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258506648.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:30 Heat of formation + Delta-G solvation = 49.031754 kcal Electronic energy + Delta-G solvation = -17281.681527 eV Core-core repulsion = 14665.439313 eV Total energy + Delta-G solvation = -2616.242214 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.88285 -36.57152 -34.68279 -33.63174 -32.61807 -29.04416 -28.59009 -26.94288 -26.06659 -24.92396 -22.78386 -20.67368 -20.09161 -18.54981 -17.40309 -16.18760 -15.75051 -14.89985 -14.82392 -14.29196 -13.95137 -13.15314 -12.97914 -12.92157 -12.70833 -12.34352 -12.12976 -11.92838 -11.78508 -11.29312 -11.26832 -11.08410 -11.01120 -10.72368 -10.62842 -10.14333 -9.97563 -9.89261 -9.24526 -9.01420 -8.66423 -7.11875 -6.80535 -6.77700 -4.31704 2.36520 2.90862 3.04760 3.10319 3.14819 3.64078 3.88709 3.94126 4.67822 4.85041 5.08535 5.28721 5.37721 5.52784 5.62128 5.71043 5.79256 5.80420 5.88906 6.03347 6.06887 6.07346 6.37227 6.45632 6.49826 6.67533 6.92843 6.96978 7.02424 7.17461 7.51557 7.66077 7.86999 8.06864 8.16646 8.38468 8.53870 8.81592 8.84399 9.18255 10.13795 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.037262 B = 0.006243 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.264401 B = 4484.127129 C = 4976.195523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.004 4.004 3 C -0.136 4.136 4 C 0.212 3.788 5 N -0.478 5.478 6 C -0.057 4.057 7 C -0.056 4.056 8 C -0.185 4.185 9 C 0.121 3.879 10 C -0.452 4.452 11 H 0.081 0.919 12 C 0.075 3.925 13 N -0.788 5.788 14 Si 0.907 3.093 15 H -0.259 1.259 16 H -0.272 1.272 17 H -0.274 1.274 18 C -0.201 4.201 19 C 0.095 3.905 20 N -0.507 5.507 21 C 0.093 3.907 22 H 0.066 0.934 23 H 0.055 0.945 24 H 0.051 0.949 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.103 0.897 31 H 0.279 0.721 32 H 0.117 0.883 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.033 2.631 -7.561 8.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.024 4.024 3 C -0.195 4.195 4 C -0.050 4.050 5 N -0.197 5.197 6 C -0.174 4.174 7 C -0.076 4.076 8 C -0.206 4.206 9 C 0.117 3.883 10 C -0.482 4.482 11 H 0.100 0.900 12 C -0.143 4.143 13 N -0.413 5.413 14 Si 0.731 3.269 15 H -0.183 1.183 16 H -0.198 1.198 17 H -0.200 1.200 18 C -0.225 4.225 19 C -0.011 4.011 20 N -0.202 5.202 21 C -0.051 4.051 22 H 0.086 0.914 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.135 0.865 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.281 3.237 -7.536 9.252 hybrid contribution 1.083 -1.543 -0.130 1.889 sum -3.198 1.694 -7.666 8.477 Atomic orbital electron populations 1.21761 0.93806 1.01842 1.02068 1.19420 0.96060 0.95401 0.91537 1.21755 1.00946 0.94718 1.02040 1.22711 0.98302 0.89332 0.94698 1.69570 1.24113 1.27710 0.98339 1.18477 1.07413 0.97980 0.93518 1.19514 0.99448 0.98274 0.90368 1.20780 1.04278 0.97187 0.98327 1.17292 0.89643 0.90671 0.90694 1.19539 1.11822 1.15438 1.01381 0.90049 1.25917 0.95697 0.98496 0.94194 1.69881 1.18425 1.36023 1.16950 0.86287 0.78913 0.81736 0.79967 1.18272 1.19767 1.19978 1.19919 1.07842 1.00426 0.94352 1.18971 1.00796 0.99187 0.82116 1.44723 1.44906 1.25363 1.05219 1.21621 0.99119 0.97815 0.86502 0.91448 0.92585 0.92989 0.90796 0.92929 0.92584 0.91454 0.88363 0.87866 0.91015 0.86544 0.92183 0.90497 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.17 37.16 0.34 -1.47 16 2 C 0.00 -0.06 3.24 -91.77 -0.30 -0.35 16 3 C -0.14 -1.84 9.17 37.16 0.34 -1.50 16 4 C 0.21 4.31 6.37 -154.74 -0.99 3.32 16 5 N -0.48 -11.15 11.22 -8.12 -0.09 -11.24 16 6 C -0.06 -1.45 7.22 -84.67 -0.61 -2.06 16 7 C -0.06 -1.36 10.02 -39.62 -0.40 -1.76 16 8 C -0.19 -4.57 9.69 -39.33 -0.38 -4.95 16 9 C 0.12 3.23 5.58 -106.78 -0.60 2.64 16 10 C -0.45 -11.77 9.03 -37.87 -0.34 -12.11 16 11 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 12 C 0.08 1.85 5.13 -17.34 -0.09 1.76 16 13 N -0.79 -20.12 10.96 55.55 0.61 -19.51 16 14 Si 0.91 18.26 29.60 -169.99 -5.03 13.23 16 15 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 16 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 17 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 18 C -0.20 -5.34 8.68 -38.76 -0.34 -5.68 16 19 C 0.10 2.41 6.86 -83.97 -0.58 1.84 16 20 N -0.51 -10.80 3.21 -118.49 -0.38 -11.18 16 21 C 0.09 1.51 10.81 59.85 0.65 2.15 16 22 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.07 0.95 6.67 -51.93 -0.35 0.60 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.59 8.14 -51.92 -0.42 0.16 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 30 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 31 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 32 H 0.12 3.15 6.17 -52.49 -0.32 2.83 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.07 0.90 7.02 -51.93 -0.36 0.53 16 LS Contribution 294.60 15.07 4.44 4.44 Total: -1.00 -30.05 294.60 -8.55 -38.60 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -4.81 Total: 3.82 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -3.28 Total: -18.17 kcal Atomic # 7 Polarization: -42.06 SS G_CDS: 0.14 Total: -41.92 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.23 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.05 -8.55 -38.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258506648.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.635 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds