Wall clock time and date at job start Mon Mar 30 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47318 * 2 1 4 4 C 1.50703 * 109.46914 * 119.99790 * 2 1 3 5 5 N 1.30343 * 124.93239 * 299.69985 * 4 2 1 6 6 C 1.34809 * 109.89311 * 180.26384 * 5 4 2 7 7 C 1.40461 * 133.21720 * 179.97438 * 6 5 4 8 8 C 1.35783 * 120.21261 * 180.02562 * 7 6 5 9 9 C 1.41218 * 120.43004 * 359.97438 * 8 7 6 10 10 C 1.41085 * 120.04228 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00351 * 24.75060 * 10 9 8 12 12 C 1.39918 * 119.99786 * 204.74925 * 10 9 8 13 13 N 1.30863 * 120.00386 * 18.00683 * 12 10 9 14 14 Si 1.86801 * 120.00234 * 198.00193 * 12 10 9 15 15 H 1.48506 * 109.47067 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47188 * 120.00034 * 14 12 10 17 17 H 1.48499 * 109.47345 * 240.00482 * 14 12 10 18 18 C 1.40632 * 119.91174 * 0.02562 * 9 8 7 19 19 C 1.38007 * 119.49123 * 359.97438 * 18 9 8 20 20 N 1.35918 * 124.93721 * 119.99698 * 4 2 1 21 21 C 1.46500 * 126.44808 * 359.71667 * 20 4 2 22 22 H 1.08998 * 109.47219 * 300.00274 * 1 2 3 23 23 H 1.09006 * 109.46760 * 60.00649 * 1 2 3 24 24 H 1.09003 * 109.47607 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47219 * 239.99726 * 2 1 3 26 26 H 1.08998 * 109.47306 * 179.97438 * 3 2 1 27 27 H 1.09011 * 109.46950 * 299.99795 * 3 2 1 28 28 H 1.09005 * 109.47442 * 59.99384 * 3 2 1 29 29 H 1.07996 * 119.89592 * 359.97438 * 7 6 5 30 30 H 1.07993 * 119.78952 * 179.97438 * 8 7 6 31 31 H 0.96994 * 120.00706 * 179.97438 * 13 12 10 32 32 H 1.07996 * 120.25115 * 179.97438 * 18 9 8 33 33 H 1.09004 * 109.47023 * 89.99914 * 21 20 4 34 34 H 1.08997 * 109.47602 * 209.99406 * 21 20 4 35 35 H 1.08999 * 109.47186 * 330.00280 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7819 -0.3466 2.4568 6 6 2.3840 -1.1912 3.3179 7 6 2.4394 -1.2576 4.7199 8 6 3.1424 -2.2462 5.3298 9 6 3.8238 -3.2169 4.5633 10 6 4.5523 -4.2403 5.2056 11 1 4.2917 -4.5400 6.2098 12 6 5.6124 -4.8670 4.5414 13 7 6.1589 -4.2973 3.4976 14 14 6.2480 -6.5167 5.1446 15 1 5.4661 -6.9441 6.3326 16 1 6.1019 -7.5276 4.0666 17 1 7.6808 -6.3903 5.5138 18 6 3.7762 -3.1615 3.1589 19 6 3.0607 -2.1552 2.5425 20 7 2.8169 -1.8202 1.2228 21 6 3.3108 -2.5288 0.0395 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6767 1.9564 0.8899 29 1 1.9219 -0.5195 5.3146 30 1 3.1808 -2.2905 6.4082 31 1 6.8940 -4.7315 3.0374 32 1 4.2957 -3.9008 2.5673 33 1 4.2723 -2.1112 -0.2591 34 1 3.4310 -3.5866 0.2732 35 1 2.5966 -2.4156 -0.7761 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258506648.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:30 Heat of formation + Delta-G solvation = 32.677118 kcal Electronic energy + Delta-G solvation = -17282.390717 eV Core-core repulsion = 14665.439313 eV Total energy + Delta-G solvation = -2616.951404 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.61807 -38.35446 -36.06444 -35.34449 -34.35214 -30.90542 -30.41426 -27.98871 -27.60312 -26.73566 -24.33159 -22.52877 -21.79034 -20.11320 -19.20846 -17.84279 -17.56625 -16.54142 -16.45913 -15.85410 -15.21791 -14.79795 -14.64485 -14.44169 -14.14354 -13.84469 -13.67210 -13.41688 -13.07972 -12.92321 -12.84804 -12.54328 -12.32260 -12.17418 -11.94253 -11.79392 -11.75544 -11.65549 -11.02799 -10.82108 -10.48771 -8.99044 -8.68873 -8.62563 -6.27349 0.56728 1.08762 1.39388 1.44982 1.55088 2.05928 2.16414 2.22163 2.80903 3.45887 3.68796 3.84316 4.02248 4.13142 4.24575 4.36259 4.44992 4.55099 4.67746 4.78650 4.85999 4.88864 4.99707 5.02462 5.06958 5.13899 5.20727 5.29287 5.39831 5.43147 5.62530 5.83825 5.94853 6.14166 6.24749 6.60186 6.72308 6.89428 6.92280 7.39412 8.32019 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.037262 B = 0.006243 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.264401 B = 4484.127129 C = 4976.195523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.007 4.007 3 C -0.132 4.132 4 C 0.234 3.766 5 N -0.510 5.510 6 C -0.080 4.080 7 C -0.064 4.064 8 C -0.197 4.197 9 C 0.090 3.910 10 C -0.485 4.485 11 H 0.084 0.916 12 C 0.035 3.965 13 N -0.821 5.821 14 Si 0.984 3.016 15 H -0.255 1.255 16 H -0.266 1.266 17 H -0.266 1.266 18 C -0.216 4.216 19 C 0.070 3.930 20 N -0.511 5.511 21 C 0.084 3.916 22 H 0.047 0.953 23 H 0.095 0.905 24 H 0.046 0.954 25 H 0.106 0.894 26 H 0.042 0.958 27 H 0.096 0.904 28 H 0.047 0.953 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.287 0.713 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.440 2.723 -9.570 10.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.027 4.027 3 C -0.190 4.190 4 C -0.031 4.031 5 N -0.230 5.230 6 C -0.196 4.196 7 C -0.084 4.084 8 C -0.217 4.217 9 C 0.086 3.914 10 C -0.515 4.515 11 H 0.102 0.898 12 C -0.180 4.180 13 N -0.447 5.447 14 Si 0.804 3.196 15 H -0.179 1.179 16 H -0.190 1.190 17 H -0.191 1.191 18 C -0.240 4.240 19 C -0.037 4.037 20 N -0.205 5.205 21 C -0.057 4.057 22 H 0.066 0.934 23 H 0.114 0.886 24 H 0.065 0.935 25 H 0.124 0.876 26 H 0.061 0.939 27 H 0.114 0.886 28 H 0.067 0.933 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.687 3.332 -9.558 11.155 hybrid contribution 1.139 -1.436 0.332 1.862 sum -3.549 1.896 -9.226 10.065 Atomic orbital electron populations 1.21736 0.92258 1.01853 1.03114 1.19823 0.97243 0.95868 0.89780 1.21735 1.00333 0.93821 1.03126 1.23976 0.95336 0.87959 0.95792 1.69612 1.25708 1.28342 0.99358 1.18912 1.07736 0.98564 0.94379 1.19781 0.99421 0.98557 0.90633 1.20965 1.04468 0.97118 0.99126 1.17682 0.90685 0.91732 0.91302 1.19800 1.12998 1.16636 1.02036 0.89778 1.26790 0.95307 1.01810 0.94097 1.69933 1.19030 1.37641 1.18070 0.85137 0.78386 0.76573 0.79484 1.17884 1.19021 1.19078 1.19845 1.08707 1.00962 0.94511 1.19125 1.01136 0.99175 0.84306 1.45111 1.44519 1.25729 1.05140 1.21969 1.00964 0.97007 0.85771 0.93357 0.88617 0.93517 0.87632 0.93874 0.88552 0.93349 0.86369 0.86269 0.90204 0.87932 0.91026 0.91286 0.86718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 9.17 71.98 0.66 -2.37 16 2 C -0.01 -0.18 3.24 -11.54 -0.04 -0.22 16 3 C -0.13 -3.14 9.17 71.98 0.66 -2.48 16 4 C 0.23 9.16 6.37 137.89 0.88 10.04 16 5 N -0.51 -23.82 11.22 -179.61 -2.01 -25.83 16 6 C -0.08 -4.14 7.22 39.91 0.29 -3.85 16 7 C -0.06 -3.20 10.02 22.24 0.22 -2.97 16 8 C -0.20 -10.05 9.69 22.43 0.22 -9.83 16 9 C 0.09 5.01 5.58 -21.26 -0.12 4.89 16 10 C -0.49 -26.12 9.03 23.38 0.21 -25.91 16 11 H 0.08 4.29 7.91 -2.91 -0.02 4.27 16 12 C 0.04 1.76 5.13 85.24 0.44 2.20 16 13 N -0.82 -42.96 10.96 21.82 0.24 -42.72 16 14 Si 0.98 37.65 29.60 68.60 2.03 39.68 16 15 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 16 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 17 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 18 C -0.22 -11.96 8.68 22.80 0.20 -11.76 16 19 C 0.07 3.63 6.86 38.75 0.27 3.90 16 20 N -0.51 -21.41 3.21 -528.78 -1.70 -23.11 16 21 C 0.08 2.58 10.81 127.77 1.38 3.96 16 22 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 23 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 24 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.11 2.15 6.67 -2.39 -0.02 2.13 16 26 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 29 H 0.12 5.21 8.06 -2.91 -0.02 5.19 16 30 H 0.12 5.48 8.06 -2.91 -0.02 5.46 16 31 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 32 H 0.10 5.82 6.17 -2.91 -0.02 5.80 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.11 2.46 7.02 -2.39 -0.02 2.44 16 Total: -1.00 -68.21 294.60 4.90 -63.31 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 1.08 Total: 23.07 kcal Atomic # 6 Polarization: -39.66 SS G_CDS: 5.26 Total: -34.40 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -3.47 Total: -91.66 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Total: -68.21 4.90 -63.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258506648.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.988 kcal (2) G-P(sol) polarization free energy of solvation -68.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds