Wall clock time and date at job start Mon Mar 30 2020 06:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46860 * 2 1 4 4 C 1.52992 * 109.46932 * 119.99973 * 2 1 3 5 5 C 1.50695 * 109.47348 * 65.00369 * 4 2 1 6 6 N 1.30347 * 124.93550 * 304.99813 * 5 4 2 7 7 C 1.34803 * 109.89598 * 179.97438 * 6 5 4 8 8 C 1.40457 * 133.22385 * 179.97438 * 7 6 5 9 9 C 1.35778 * 120.21964 * 180.27734 * 8 7 6 10 10 C 1.41213 * 120.42556 * 359.41987 * 9 8 7 11 11 C 1.41094 * 120.04191 * 180.27178 * 10 9 8 12 12 H 1.07998 * 119.99894 * 25.05983 * 11 10 9 13 13 C 1.39924 * 120.00191 * 205.05750 * 11 10 9 14 14 N 1.30866 * 119.99538 * 17.99759 * 13 11 10 15 15 Si 1.86795 * 120.00052 * 197.99140 * 13 11 10 16 16 H 1.48505 * 109.46924 * 90.00537 * 15 13 11 17 17 H 1.48502 * 109.47039 * 210.00051 * 15 13 11 18 18 H 1.48498 * 109.47575 * 330.00411 * 15 13 11 19 19 C 1.40623 * 119.91467 * 0.60092 * 10 9 8 20 20 C 1.38005 * 119.49335 * 359.69449 * 19 10 9 21 21 N 1.35926 * 124.93800 * 124.99538 * 5 4 2 22 22 H 0.96997 * 126.44611 * 359.97438 * 21 5 4 23 23 H 1.09001 * 109.46899 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47769 * 300.00001 * 1 2 3 25 25 H 1.09006 * 109.47149 * 60.00472 * 1 2 3 26 26 H 1.08996 * 109.47248 * 240.00502 * 2 1 3 27 27 H 1.09000 * 109.47334 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47366 * 300.00168 * 3 2 1 29 29 H 1.09004 * 109.47082 * 59.99689 * 3 2 1 30 30 H 1.09003 * 109.47598 * 305.00094 * 4 2 1 31 31 H 1.09001 * 109.46876 * 185.00486 * 4 2 1 32 32 H 1.08002 * 119.88759 * 0.02562 * 8 7 6 33 33 H 1.07999 * 119.79088 * 179.70304 * 9 8 7 34 34 H 0.96999 * 119.99627 * 179.97438 * 14 13 11 35 35 H 1.08006 * 120.25692 * 179.67517 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 -2.1732 1.1888 6 7 0.4220 -2.6067 1.0334 7 6 0.4122 -3.9547 1.0218 8 6 -0.6104 -4.9081 0.8874 9 6 -0.3174 -6.2335 0.9193 10 6 1.0173 -6.6674 1.0754 11 6 1.3133 -8.0467 1.1017 12 1 0.6510 -8.7503 0.6193 13 6 2.4648 -8.5029 1.7527 14 7 3.0728 -7.7356 2.6210 15 14 3.1338 -10.2071 1.3823 16 1 4.1020 -10.1255 0.2592 17 1 3.8172 -10.7432 2.5868 18 1 2.0144 -11.1076 1.0064 19 6 2.0503 -5.7230 1.2115 20 6 1.7480 -4.3767 1.1846 21 7 2.5012 -3.2213 1.2885 22 1 3.4623 -3.1687 1.4085 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 1.8934 -0.5137 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6053 -0.2617 2.1370 31 1 3.1263 -0.6442 1.2951 32 1 -1.6336 -4.5859 0.7623 33 1 -1.1097 -6.9607 0.8201 34 1 3.8709 -8.0520 3.0726 35 1 3.0725 -6.0487 1.3364 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258703582.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:22 Heat of formation + Delta-G solvation = 39.763770 kcal Electronic energy + Delta-G solvation = -16923.748497 eV Core-core repulsion = 14307.104394 eV Total energy + Delta-G solvation = -2616.644104 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 6.37 seconds Orbital eigenvalues (eV) -40.82596 -36.71574 -35.59226 -33.36113 -31.75555 -29.51589 -28.66568 -27.10673 -26.81533 -24.41824 -21.23710 -20.71843 -20.21871 -19.39784 -17.44471 -16.49665 -15.79408 -15.06857 -14.75326 -14.32952 -13.91192 -13.32714 -13.09324 -12.99924 -12.46125 -12.24344 -12.06255 -11.94209 -11.57769 -11.29769 -11.17595 -10.95825 -10.78524 -10.63401 -10.49861 -10.16099 -9.98780 -9.95417 -9.46601 -9.05026 -8.62632 -7.16459 -6.87040 -6.79219 -4.33998 2.35042 2.90816 3.04189 3.07609 3.15193 3.87646 3.92091 3.97184 4.65765 4.92184 5.09612 5.11092 5.35335 5.62607 5.67359 5.78395 5.80329 5.88038 6.02599 6.08728 6.18410 6.30958 6.40138 6.55249 6.66966 6.79597 6.89872 6.96099 7.06713 7.18290 7.48070 7.60803 7.85640 8.06181 8.14340 8.50883 8.53401 8.79245 8.82491 9.14255 10.12409 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.046128 B = 0.005157 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.861304 B = 5428.684789 C = 5860.562849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.085 4.085 3 C -0.146 4.146 4 C -0.023 4.023 5 C 0.208 3.792 6 N -0.474 5.474 7 C -0.059 4.059 8 C -0.057 4.057 9 C -0.185 4.185 10 C 0.123 3.877 11 C -0.453 4.453 12 H 0.081 0.919 13 C 0.075 3.925 14 N -0.787 5.787 15 Si 0.908 3.092 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.261 1.261 19 C -0.205 4.205 20 C 0.096 3.904 21 N -0.615 5.615 22 H 0.407 0.593 23 H 0.097 0.903 24 H 0.046 0.954 25 H 0.039 0.961 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.280 0.720 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 9.175 -2.369 9.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.104 4.104 3 C -0.203 4.203 4 C -0.062 4.062 5 C -0.056 4.056 6 N -0.195 5.195 7 C -0.175 4.175 8 C -0.076 4.076 9 C -0.205 4.205 10 C 0.118 3.882 11 C -0.483 4.483 12 H 0.100 0.900 13 C -0.143 4.143 14 N -0.412 5.412 15 Si 0.733 3.267 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.185 1.185 19 C -0.229 4.229 20 C -0.012 4.012 21 N -0.230 5.230 22 H 0.243 0.757 23 H 0.116 0.884 24 H 0.065 0.935 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.091 0.909 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.042 9.642 -2.282 9.963 hybrid contribution 1.689 -1.261 0.183 2.116 sum 2.731 8.381 -2.099 9.061 Atomic orbital electron populations 1.22077 0.94191 1.05287 0.99913 1.20968 0.97361 0.94814 0.97272 1.21861 1.00469 0.96330 1.01677 1.19974 0.99992 0.86919 0.99342 1.22747 0.85787 0.90484 1.06554 1.69508 1.19276 1.10419 1.20278 1.18533 0.92748 0.89382 1.16872 1.19521 0.95777 0.91526 1.00825 1.20790 0.96488 0.93961 1.09278 1.17279 0.89629 0.93033 0.88216 1.19533 1.06152 0.92586 1.29997 0.90040 1.25923 0.95947 0.99637 0.92819 1.69872 1.16224 1.37686 1.17440 0.86306 0.79773 0.81819 0.78818 1.19285 1.20335 1.18484 1.19948 1.00060 0.86759 1.16139 1.18981 0.91408 0.88278 1.02517 1.42746 1.09248 1.05547 1.65435 0.75712 0.88426 0.93479 0.94198 0.91516 0.93076 0.92763 0.92721 0.90114 0.91262 0.88343 0.87854 0.90922 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 8.91 37.16 0.33 -1.92 16 2 C -0.08 -1.11 2.91 -90.62 -0.26 -1.37 16 3 C -0.15 -1.48 9.19 37.16 0.34 -1.14 16 4 C -0.02 -0.32 5.32 -27.89 -0.15 -0.47 16 5 C 0.21 4.02 7.35 -154.73 -1.14 2.88 16 6 N -0.47 -10.51 8.48 -8.12 -0.07 -10.58 16 7 C -0.06 -1.44 7.23 -84.67 -0.61 -2.05 16 8 C -0.06 -1.34 10.02 -39.63 -0.40 -1.74 16 9 C -0.18 -4.48 9.69 -39.33 -0.38 -4.86 16 10 C 0.12 3.23 5.58 -106.79 -0.60 2.63 16 11 C -0.45 -11.70 9.03 -37.87 -0.34 -12.04 16 12 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 13 C 0.08 1.84 5.13 -17.33 -0.09 1.75 16 14 N -0.79 -20.01 10.97 55.55 0.61 -19.40 16 15 Si 0.91 18.20 29.60 -169.99 -5.03 13.17 16 16 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 17 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 18 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 19 C -0.20 -5.35 8.70 -38.77 -0.34 -5.69 16 20 C 0.10 2.34 7.28 -83.97 -0.61 1.73 16 21 N -0.62 -12.44 6.25 -7.98 -0.05 -12.49 16 22 H 0.41 6.85 8.96 -40.82 -0.37 6.49 16 23 H 0.10 1.72 5.47 -51.93 -0.28 1.43 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 33 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 34 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 35 H 0.12 3.13 6.17 -52.48 -0.32 2.80 16 LS Contribution 291.00 15.07 4.39 4.39 Total: -1.00 -28.76 291.00 -9.15 -37.90 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -4.75 Total: 9.29 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -4.24 Total: -22.28 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.49 Total: -42.47 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.76 -9.15 -37.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258703582.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.666 kcal (2) G-P(sol) polarization free energy of solvation -28.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.37 seconds