Wall clock time and date at job start Mon Mar 30 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46860 * 2 1 4 4 C 1.52992 * 109.46932 * 119.99973 * 2 1 3 5 5 C 1.50695 * 109.47348 * 65.00369 * 4 2 1 6 6 N 1.30347 * 124.93550 * 304.99813 * 5 4 2 7 7 C 1.34803 * 109.89598 * 179.97438 * 6 5 4 8 8 C 1.40457 * 133.22385 * 179.97438 * 7 6 5 9 9 C 1.35778 * 120.21964 * 180.27734 * 8 7 6 10 10 C 1.41213 * 120.42556 * 359.41987 * 9 8 7 11 11 C 1.41094 * 120.04191 * 180.27178 * 10 9 8 12 12 H 1.07998 * 119.99894 * 25.05983 * 11 10 9 13 13 C 1.39924 * 120.00191 * 205.05750 * 11 10 9 14 14 N 1.30866 * 119.99538 * 17.99759 * 13 11 10 15 15 Si 1.86795 * 120.00052 * 197.99140 * 13 11 10 16 16 H 1.48505 * 109.46924 * 90.00537 * 15 13 11 17 17 H 1.48502 * 109.47039 * 210.00051 * 15 13 11 18 18 H 1.48498 * 109.47575 * 330.00411 * 15 13 11 19 19 C 1.40623 * 119.91467 * 0.60092 * 10 9 8 20 20 C 1.38005 * 119.49335 * 359.69449 * 19 10 9 21 21 N 1.35926 * 124.93800 * 124.99538 * 5 4 2 22 22 H 0.96997 * 126.44611 * 359.97438 * 21 5 4 23 23 H 1.09001 * 109.46899 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47769 * 300.00001 * 1 2 3 25 25 H 1.09006 * 109.47149 * 60.00472 * 1 2 3 26 26 H 1.08996 * 109.47248 * 240.00502 * 2 1 3 27 27 H 1.09000 * 109.47334 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47366 * 300.00168 * 3 2 1 29 29 H 1.09004 * 109.47082 * 59.99689 * 3 2 1 30 30 H 1.09003 * 109.47598 * 305.00094 * 4 2 1 31 31 H 1.09001 * 109.46876 * 185.00486 * 4 2 1 32 32 H 1.08002 * 119.88759 * 0.02562 * 8 7 6 33 33 H 1.07999 * 119.79088 * 179.70304 * 9 8 7 34 34 H 0.96999 * 119.99627 * 179.97438 * 14 13 11 35 35 H 1.08006 * 120.25692 * 179.67517 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6414 -2.1732 1.1888 6 7 0.4220 -2.6067 1.0334 7 6 0.4122 -3.9547 1.0218 8 6 -0.6104 -4.9081 0.8874 9 6 -0.3174 -6.2335 0.9193 10 6 1.0173 -6.6674 1.0754 11 6 1.3133 -8.0467 1.1017 12 1 0.6510 -8.7503 0.6193 13 6 2.4648 -8.5029 1.7527 14 7 3.0728 -7.7356 2.6210 15 14 3.1338 -10.2071 1.3823 16 1 4.1020 -10.1255 0.2592 17 1 3.8172 -10.7432 2.5868 18 1 2.0144 -11.1076 1.0064 19 6 2.0503 -5.7230 1.2115 20 6 1.7480 -4.3767 1.1846 21 7 2.5012 -3.2213 1.2885 22 1 3.4623 -3.1687 1.4085 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 1.8934 -0.5137 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6765 1.9564 0.8900 30 1 1.6053 -0.2617 2.1370 31 1 3.1263 -0.6442 1.2951 32 1 -1.6336 -4.5859 0.7623 33 1 -1.1097 -6.9607 0.8201 34 1 3.8709 -8.0520 3.0726 35 1 3.0725 -6.0487 1.3364 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258703582.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:17:18 Heat of formation + Delta-G solvation = 24.707343 kcal Electronic energy + Delta-G solvation = -16924.401393 eV Core-core repulsion = 14307.104394 eV Total energy + Delta-G solvation = -2617.296999 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.55080 -38.35176 -36.91024 -35.18837 -33.50503 -31.10887 -30.50486 -28.61032 -27.82903 -26.17715 -22.95747 -22.52625 -21.73595 -20.70802 -19.29717 -18.21059 -17.55257 -16.64345 -16.20176 -15.80142 -15.38501 -14.84468 -14.56305 -14.50115 -14.26996 -13.71294 -13.39522 -13.05784 -12.99256 -12.86086 -12.68505 -12.48938 -12.28638 -11.87360 -11.81143 -11.66780 -11.61845 -11.52218 -11.23484 -10.84328 -10.35166 -9.01364 -8.74111 -8.62371 -6.27676 0.57801 1.09922 1.39917 1.47698 1.53384 2.17326 2.22452 2.36725 2.81568 3.52600 3.69805 3.99181 4.05590 4.14989 4.39324 4.62091 4.70464 4.75983 4.86702 4.90907 4.94936 5.04252 5.07969 5.11554 5.16968 5.24601 5.30278 5.36788 5.54839 5.60062 5.75169 5.79060 5.96633 6.18219 6.25704 6.60427 6.87411 6.92520 6.94404 7.39028 8.31821 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.046128 B = 0.005157 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.861304 B = 5428.684789 C = 5860.562849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.082 4.082 3 C -0.138 4.138 4 C -0.024 4.024 5 C 0.233 3.767 6 N -0.496 5.496 7 C -0.079 4.079 8 C -0.063 4.063 9 C -0.196 4.196 10 C 0.093 3.907 11 C -0.487 4.487 12 H 0.085 0.915 13 C 0.035 3.965 14 N -0.821 5.821 15 Si 0.984 3.016 16 H -0.264 1.264 17 H -0.269 1.269 18 H -0.255 1.255 19 C -0.222 4.222 20 C 0.074 3.926 21 N -0.608 5.608 22 H 0.422 0.578 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.287 0.713 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.592 10.603 -2.471 11.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.101 4.101 3 C -0.196 4.196 4 C -0.063 4.063 5 C -0.033 4.033 6 N -0.218 5.218 7 C -0.195 4.195 8 C -0.082 4.082 9 C -0.217 4.217 10 C 0.089 3.911 11 C -0.516 4.516 12 H 0.103 0.897 13 C -0.180 4.180 14 N -0.446 5.446 15 Si 0.805 3.195 16 H -0.189 1.189 17 H -0.194 1.194 18 H -0.178 1.178 19 C -0.246 4.246 20 C -0.034 4.034 21 N -0.223 5.223 22 H 0.261 0.739 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.098 0.902 35 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.946 11.080 -2.383 11.499 hybrid contribution 1.398 -1.484 0.219 2.050 sum 3.344 9.596 -2.164 10.390 Atomic orbital electron populations 1.22029 0.95283 1.03210 1.00911 1.20946 0.96399 0.96731 0.96043 1.21790 1.01378 0.93798 1.02599 1.20307 1.02246 0.83146 1.00564 1.23913 0.84846 0.92354 1.02194 1.69646 1.20813 1.08983 1.22325 1.18951 0.92997 0.90747 1.16779 1.19790 0.96840 0.91339 1.00276 1.20971 0.96287 0.94734 1.09676 1.17653 0.90622 0.93737 0.89107 1.19806 1.07718 0.92706 1.31387 0.89731 1.26786 0.95539 1.03761 0.91925 1.69927 1.16787 1.39773 1.18156 0.85173 0.79034 0.76584 0.78754 1.18856 1.19405 1.17849 1.19889 0.99402 0.87782 1.17529 1.19061 0.92415 0.88793 1.03173 1.42815 1.10210 1.04592 1.64717 0.73859 0.91890 0.92768 0.93002 0.92792 0.91600 0.92024 0.91701 0.88551 0.88057 0.86250 0.86305 0.90209 0.87995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.19 8.91 71.98 0.64 -3.55 16 2 C -0.08 -1.91 2.91 -10.80 -0.03 -1.94 16 3 C -0.14 -2.25 9.19 71.98 0.66 -1.58 16 4 C -0.02 -0.59 5.32 29.84 0.16 -0.43 16 5 C 0.23 8.61 7.35 137.89 1.01 9.62 16 6 N -0.50 -21.82 8.48 -179.61 -1.52 -23.34 16 7 C -0.08 -3.92 7.23 39.91 0.29 -3.63 16 8 C -0.06 -3.02 10.02 22.24 0.22 -2.80 16 9 C -0.20 -9.80 9.69 22.43 0.22 -9.59 16 10 C 0.09 5.07 5.58 -21.27 -0.12 4.95 16 11 C -0.49 -25.91 9.03 23.38 0.21 -25.70 16 12 H 0.08 4.26 7.91 -2.91 -0.02 4.24 16 13 C 0.04 1.75 5.13 85.25 0.44 2.19 16 14 N -0.82 -42.70 10.97 21.83 0.24 -42.47 16 15 Si 0.98 37.48 29.60 68.60 2.03 39.51 16 16 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 17 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 18 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 19 C -0.22 -12.03 8.70 22.80 0.20 -11.83 16 20 C 0.07 3.70 7.28 38.75 0.28 3.98 16 21 N -0.61 -24.15 6.25 -179.17 -1.12 -25.27 16 22 H 0.42 13.72 8.96 -92.71 -0.83 12.89 16 23 H 0.06 2.17 5.47 -2.39 -0.01 2.15 16 24 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.12 5.07 8.06 -2.91 -0.02 5.05 16 33 H 0.12 5.35 8.06 -2.91 -0.02 5.33 16 34 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 35 H 0.10 5.71 6.17 -2.91 -0.02 5.69 16 Total: -1.00 -63.98 291.00 4.07 -59.91 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 0.26 Total: 31.94 kcal Atomic # 6 Polarization: -44.47 SS G_CDS: 4.18 Total: -40.29 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -2.40 Total: -91.07 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Total: -63.98 4.07 -59.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258703582.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.616 kcal (2) G-P(sol) polarization free energy of solvation -63.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds