Wall clock time and date at job start Mon Mar 30 2020 07:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 110.99867 * 2 1 4 4 C 1.50705 * 109.47097 * 293.95600 * 3 2 1 5 5 H 1.07996 * 120.00117 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99759 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00251 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99988 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47084 * 59.99543 * 8 6 4 10 10 H 1.48495 * 109.47186 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46687 * 299.99790 * 8 6 4 12 12 C 1.40723 * 110.99976 * 123.95287 * 2 1 3 13 13 C 1.34592 * 126.52108 * 296.06639 * 12 2 1 14 14 N 1.37625 * 109.74643 * 179.97438 * 13 12 2 15 15 C 1.46499 * 125.08283 * 179.97438 * 14 13 12 16 16 C 1.37658 * 109.83520 * 0.23160 * 14 13 12 17 17 C 1.39167 * 133.38020 * 180.39593 * 16 14 13 18 18 C 1.37725 * 119.78733 * 179.64998 * 17 16 14 19 19 C 1.38861 * 120.65358 * 359.75322 * 18 17 16 20 20 C 1.36616 * 120.52709 * 0.02562 * 19 18 17 21 21 C 1.39601 * 119.78390 * 359.97438 * 20 19 18 22 22 H 1.09005 * 109.46950 * 296.04772 * 1 2 3 23 23 H 1.08999 * 109.47402 * 56.04462 * 1 2 3 24 24 H 1.08998 * 109.47099 * 176.05035 * 1 2 3 25 25 H 1.08998 * 109.47088 * 53.95518 * 3 2 1 26 26 H 1.09003 * 109.47289 * 173.95762 * 3 2 1 27 27 H 0.97001 * 119.99917 * 179.97438 * 7 6 4 28 28 H 1.08001 * 125.12864 * 359.94999 * 13 12 2 29 29 H 1.09002 * 109.47391 * 90.02202 * 15 14 13 30 30 H 1.09001 * 109.46813 * 330.02258 * 15 14 13 31 31 H 1.09004 * 109.47041 * 210.02385 * 15 14 13 32 32 H 1.08002 * 120.11078 * 359.43019 * 17 16 14 33 33 H 1.07996 * 119.67647 * 179.72769 * 18 17 16 34 34 H 1.07997 * 119.73314 * 179.97438 * 19 18 17 35 35 H 1.07999 * 120.10873 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0738 1.5116 -2.0485 6 6 2.0275 3.3492 -1.5289 7 7 2.7127 4.0016 -0.6153 8 14 1.5825 4.1870 -3.1381 9 1 0.1052 4.2244 -3.2846 10 1 2.1158 5.5729 -3.1386 11 1 2.1732 3.4294 -4.2704 12 6 1.9733 -0.7338 1.0898 13 6 1.8166 -0.4406 2.3940 14 7 2.4513 -1.3890 3.1633 15 6 2.4933 -1.3949 4.6276 16 6 3.0456 -2.3280 2.3509 17 6 3.7907 -3.4760 2.6033 18 6 4.2562 -4.2344 1.5521 19 6 3.9851 -3.8683 0.2403 20 6 3.2518 -2.7478 -0.0300 21 6 2.7701 -1.9642 1.0202 22 1 -0.3633 0.4513 0.9233 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3633 -1.0252 -0.0708 25 1 1.5611 1.9273 0.8309 26 1 3.0797 1.3445 0.1082 27 1 2.9879 4.9175 -0.7776 28 1 1.2749 0.4108 2.7789 29 1 1.6418 -1.9555 5.0133 30 1 2.4508 -0.3701 4.9965 31 1 3.4187 -1.8636 4.9627 32 1 4.0064 -3.7693 3.6201 33 1 4.8380 -5.1225 1.7499 34 1 4.3578 -4.4737 -0.5726 35 1 3.0447 -2.4695 -1.0528 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258966767.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:27 Heat of formation + Delta-G solvation = 70.701248 kcal Electronic energy + Delta-G solvation = -17103.277215 eV Core-core repulsion = 14487.974661 eV Total energy + Delta-G solvation = -2615.302554 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.90457 -36.93538 -36.10533 -32.68801 -31.52473 -30.01010 -28.31135 -27.19086 -26.09404 -24.24720 -22.39916 -21.56664 -20.98396 -18.82985 -16.78003 -16.27878 -15.94334 -15.16733 -15.06861 -14.65093 -14.11938 -13.62219 -13.50188 -13.38719 -13.08672 -12.56585 -12.42630 -12.23264 -11.93311 -11.38115 -11.25457 -10.95872 -10.87786 -10.77312 -10.51664 -10.42039 -9.96954 -9.25031 -9.06359 -8.41968 -7.80044 -7.31598 -7.09930 -6.00276 -4.01875 1.49174 1.97033 3.07387 3.10662 3.35661 3.39447 3.42803 4.28979 4.44730 4.83551 4.94401 4.99476 5.21970 5.28654 5.34953 5.39328 5.42718 5.48247 5.85539 5.92871 6.06499 6.17264 6.24241 6.31111 6.46255 6.75442 6.81276 6.95476 7.01989 7.14030 7.33417 7.41619 7.58500 7.63075 7.88393 8.19080 8.22394 8.72667 9.05273 9.61991 11.10457 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029411 B = 0.005931 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.796978 B = 4719.911536 C = 5156.437992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.482 5.482 3 C 0.201 3.799 4 C -0.508 4.508 5 H 0.064 0.936 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.041 3.959 13 C 0.005 3.995 14 N -0.492 5.492 15 C 0.085 3.915 16 C 0.101 3.899 17 C -0.141 4.141 18 C -0.102 4.102 19 C -0.164 4.164 20 C -0.047 4.047 21 C -0.091 4.091 22 H 0.012 0.988 23 H 0.078 0.922 24 H 0.046 0.954 25 H -0.008 1.008 26 H 0.031 0.969 27 H 0.261 0.739 28 H 0.161 0.839 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.051 -13.035 8.567 15.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.203 5.203 3 C 0.077 3.923 4 C -0.547 4.547 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.061 4.061 13 C -0.120 4.120 14 N -0.177 5.177 15 C -0.057 4.057 16 C -0.006 4.006 17 C -0.162 4.162 18 C -0.121 4.121 19 C -0.183 4.183 20 C -0.066 4.066 21 C -0.097 4.097 22 H 0.030 0.970 23 H 0.096 0.904 24 H 0.065 0.935 25 H 0.009 0.991 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.179 0.821 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.130 0.870 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.153 -13.004 8.501 15.537 hybrid contribution -0.402 1.115 0.091 1.189 sum -0.249 -11.888 8.592 14.671 Atomic orbital electron populations 1.22233 0.87641 0.99780 1.00542 1.59676 1.06789 1.17320 1.36508 1.19782 0.95560 0.80385 0.96562 1.21138 1.34899 0.96914 1.01742 0.91752 1.24981 0.95264 0.97311 0.96993 1.69959 1.38298 1.11496 1.34123 0.86547 0.78671 0.78301 0.83810 1.20257 1.21397 1.20112 1.19278 1.02470 0.95621 0.88681 1.22336 1.02677 0.95537 0.91433 1.43711 1.46576 1.22212 1.05214 1.21819 1.02570 1.03435 0.77871 1.18227 0.99542 0.92984 0.89803 1.19864 1.02654 0.94722 0.98955 1.20691 0.99992 0.99099 0.92335 1.20568 1.02815 0.98638 0.96308 1.20389 0.94755 0.92788 0.98629 1.19137 1.02115 0.96597 0.91827 0.96993 0.90371 0.93539 0.99064 0.95125 0.92895 0.82141 0.91881 0.90241 0.90580 0.87009 0.86427 0.86513 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.92 9.28 60.06 0.56 1.48 16 2 N -0.48 -11.09 4.87 -178.59 -0.87 -11.96 16 3 C 0.20 5.39 4.45 -4.97 -0.02 5.37 16 4 C -0.51 -14.44 8.46 -34.44 -0.29 -14.73 16 5 H 0.06 1.79 7.12 -52.49 -0.37 1.42 16 6 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 7 N -0.90 -26.97 13.29 55.43 0.74 -26.24 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.73 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.04 0.85 5.17 -81.62 -0.42 0.43 16 13 C 0.00 0.09 10.62 -16.24 -0.17 -0.08 16 14 N -0.49 -7.79 3.20 -121.46 -0.39 -8.18 16 15 C 0.09 0.91 11.03 59.85 0.66 1.57 16 16 C 0.10 1.71 6.81 -83.98 -0.57 1.14 16 17 C -0.14 -2.00 9.96 -39.42 -0.39 -2.39 16 18 C -0.10 -1.36 10.01 -39.54 -0.40 -1.75 16 19 C -0.16 -2.38 9.97 -39.94 -0.40 -2.77 16 20 C -0.05 -0.83 10.05 -39.66 -0.40 -1.22 16 21 C -0.09 -1.76 6.37 -105.03 -0.67 -2.43 16 22 H 0.01 0.23 7.92 -51.93 -0.41 -0.19 16 23 H 0.08 1.64 6.76 -51.93 -0.35 1.29 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H -0.01 -0.24 8.09 -51.93 -0.42 -0.66 16 26 H 0.03 0.91 8.06 -51.93 -0.42 0.49 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.16 2.74 8.06 -52.49 -0.42 2.32 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 33 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.13 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 298.92 15.07 4.50 4.50 Total: -1.00 -32.02 298.92 -8.56 -40.59 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -4.91 Total: -1.55 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -2.61 Total: -13.90 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: -0.52 Total: -46.38 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.02 -8.56 -40.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258966767.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.289 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds