Wall clock time and date at job start Mon Mar 30 2020 07:10:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 110.99867 * 2 1 4 4 C 1.50705 * 109.47097 * 293.95600 * 3 2 1 5 5 H 1.07996 * 120.00117 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99759 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00251 * 359.97438 * 6 4 3 8 8 Si 1.86806 * 119.99988 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47084 * 59.99543 * 8 6 4 10 10 H 1.48495 * 109.47186 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46687 * 299.99790 * 8 6 4 12 12 C 1.40723 * 110.99976 * 123.95287 * 2 1 3 13 13 C 1.34592 * 126.52108 * 296.06639 * 12 2 1 14 14 N 1.37625 * 109.74643 * 179.97438 * 13 12 2 15 15 C 1.46499 * 125.08283 * 179.97438 * 14 13 12 16 16 C 1.37658 * 109.83520 * 0.23160 * 14 13 12 17 17 C 1.39167 * 133.38020 * 180.39593 * 16 14 13 18 18 C 1.37725 * 119.78733 * 179.64998 * 17 16 14 19 19 C 1.38861 * 120.65358 * 359.75322 * 18 17 16 20 20 C 1.36616 * 120.52709 * 0.02562 * 19 18 17 21 21 C 1.39601 * 119.78390 * 359.97438 * 20 19 18 22 22 H 1.09005 * 109.46950 * 296.04772 * 1 2 3 23 23 H 1.08999 * 109.47402 * 56.04462 * 1 2 3 24 24 H 1.08998 * 109.47099 * 176.05035 * 1 2 3 25 25 H 1.08998 * 109.47088 * 53.95518 * 3 2 1 26 26 H 1.09003 * 109.47289 * 173.95762 * 3 2 1 27 27 H 0.97001 * 119.99917 * 179.97438 * 7 6 4 28 28 H 1.08001 * 125.12864 * 359.94999 * 13 12 2 29 29 H 1.09002 * 109.47391 * 90.02202 * 15 14 13 30 30 H 1.09001 * 109.46813 * 330.02258 * 15 14 13 31 31 H 1.09004 * 109.47041 * 210.02385 * 15 14 13 32 32 H 1.08002 * 120.11078 * 359.43019 * 17 16 14 33 33 H 1.07996 * 119.67647 * 179.72769 * 18 17 16 34 34 H 1.07997 * 119.73314 * 179.97438 * 19 18 17 35 35 H 1.07999 * 120.10873 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 -1.2985 5 1 1.0738 1.5116 -2.0485 6 6 2.0275 3.3492 -1.5289 7 7 2.7127 4.0016 -0.6153 8 14 1.5825 4.1870 -3.1381 9 1 0.1052 4.2244 -3.2846 10 1 2.1158 5.5729 -3.1386 11 1 2.1732 3.4294 -4.2704 12 6 1.9733 -0.7338 1.0898 13 6 1.8166 -0.4406 2.3940 14 7 2.4513 -1.3890 3.1633 15 6 2.4933 -1.3949 4.6276 16 6 3.0456 -2.3280 2.3509 17 6 3.7907 -3.4760 2.6033 18 6 4.2562 -4.2344 1.5521 19 6 3.9851 -3.8683 0.2403 20 6 3.2518 -2.7478 -0.0300 21 6 2.7701 -1.9642 1.0202 22 1 -0.3633 0.4513 0.9233 23 1 -0.3634 0.5740 -0.8524 24 1 -0.3633 -1.0252 -0.0708 25 1 1.5611 1.9273 0.8309 26 1 3.0797 1.3445 0.1082 27 1 2.9879 4.9175 -0.7776 28 1 1.2749 0.4108 2.7789 29 1 1.6418 -1.9555 5.0133 30 1 2.4508 -0.3701 4.9965 31 1 3.4187 -1.8636 4.9627 32 1 4.0064 -3.7693 3.6201 33 1 4.8380 -5.1225 1.7499 34 1 4.3578 -4.4737 -0.5726 35 1 3.0447 -2.4695 -1.0528 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258966767.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:26 Heat of formation + Delta-G solvation = 51.458300 kcal Electronic energy + Delta-G solvation = -17104.111651 eV Core-core repulsion = 14487.974661 eV Total energy + Delta-G solvation = -2616.136991 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.18543 -38.38196 -37.55552 -34.75121 -32.89808 -31.14032 -29.68083 -29.15754 -27.45752 -25.90750 -23.88849 -23.18220 -22.19426 -20.27172 -18.62877 -17.78548 -17.35707 -16.73060 -16.27787 -16.18019 -15.67935 -15.23558 -14.92919 -14.72542 -14.59813 -13.95941 -13.65841 -13.63283 -13.33601 -13.10546 -12.86150 -12.60741 -12.51092 -12.34047 -12.14351 -11.94484 -11.75268 -11.31459 -10.62505 -10.37850 -9.12431 -9.04938 -8.41794 -8.19189 -6.31767 0.24928 0.77103 1.41230 1.45491 1.53113 1.68956 1.93171 2.41073 3.06192 3.11459 3.31184 3.86121 3.91327 4.02861 4.27239 4.35888 4.45949 4.52915 4.60649 4.66253 4.72633 4.76975 4.85839 4.96511 5.03254 5.14306 5.22621 5.25908 5.60844 5.64212 5.73583 5.81888 5.90516 6.09231 6.28066 6.29206 6.46616 6.83487 6.93819 7.38001 8.90420 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.029411 B = 0.005931 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.796978 B = 4719.911536 C = 5156.437992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.490 5.490 3 C 0.223 3.777 4 C -0.527 4.527 5 H 0.065 0.935 6 C 0.002 3.998 7 N -0.935 5.935 8 Si 0.973 3.027 9 H -0.264 1.264 10 H -0.282 1.282 11 H -0.269 1.269 12 C -0.010 4.010 13 C 0.011 3.989 14 N -0.488 5.488 15 C 0.076 3.924 16 C 0.088 3.912 17 C -0.135 4.135 18 C -0.095 4.095 19 C -0.154 4.154 20 C -0.080 4.080 21 C -0.128 4.128 22 H 0.017 0.983 23 H 0.066 0.934 24 H 0.066 0.934 25 H -0.032 1.032 26 H -0.010 1.010 27 H 0.265 0.735 28 H 0.165 0.835 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.149 0.851 33 H 0.161 0.839 34 H 0.144 0.856 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.341 -14.904 9.383 17.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.211 5.211 3 C 0.098 3.902 4 C -0.565 4.565 5 H 0.083 0.917 6 C -0.196 4.196 7 N -0.576 5.576 8 Si 0.797 3.203 9 H -0.189 1.189 10 H -0.207 1.207 11 H -0.194 1.194 12 C -0.111 4.111 13 C -0.116 4.116 14 N -0.172 5.172 15 C -0.064 4.064 16 C -0.019 4.019 17 C -0.156 4.156 18 C -0.114 4.114 19 C -0.173 4.173 20 C -0.099 4.099 21 C -0.133 4.133 22 H 0.035 0.965 23 H 0.084 0.916 24 H 0.085 0.915 25 H -0.014 1.014 26 H 0.008 0.992 27 H 0.074 0.926 28 H 0.182 0.818 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.166 0.834 33 H 0.178 0.822 34 H 0.162 0.838 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.542 -14.911 9.352 17.609 hybrid contribution -0.464 1.571 -0.062 1.639 sum 0.078 -13.340 9.289 16.256 Atomic orbital electron populations 1.22194 0.86364 1.00840 1.00183 1.59474 1.08065 1.14868 1.38709 1.19328 0.92885 0.82645 0.95306 1.21449 1.35168 0.97582 1.02330 0.91667 1.25945 0.94824 0.97923 1.00874 1.70097 1.39196 1.11930 1.36338 0.85386 0.79000 0.77073 0.78857 1.18863 1.20717 1.19442 1.19475 1.05320 0.97260 0.89054 1.22314 1.02217 0.95853 0.91253 1.43968 1.45239 1.20972 1.07012 1.22197 1.04695 1.04852 0.74627 1.18577 1.00229 0.94104 0.88961 1.20341 1.00921 0.93149 1.01153 1.21209 0.99040 0.99901 0.91255 1.20930 1.00924 0.97254 0.98211 1.20457 0.97131 0.94647 0.97679 1.19384 1.03231 0.96814 0.93902 0.96492 0.91564 0.91497 1.01402 0.99224 0.92632 0.81795 0.89776 0.89317 0.88319 0.83376 0.82164 0.83843 0.87366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.16 9.28 127.69 1.19 3.35 16 2 N -0.49 -23.87 4.87 -718.93 -3.50 -27.37 16 3 C 0.22 12.76 4.45 85.56 0.38 13.14 16 4 C -0.53 -31.10 8.46 25.60 0.22 -30.88 16 5 H 0.07 3.75 7.12 -2.91 -0.02 3.73 16 6 C 0.00 0.14 5.46 84.65 0.46 0.60 16 7 N -0.94 -57.77 13.29 21.45 0.28 -57.48 16 8 Si 0.97 45.16 29.54 68.60 2.03 47.19 16 9 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 C -0.01 -0.43 5.17 39.11 0.20 -0.23 16 13 C 0.01 0.40 10.62 82.95 0.88 1.28 16 14 N -0.49 -14.99 3.20 -538.18 -1.72 -16.71 16 15 C 0.08 1.43 11.03 127.77 1.41 2.84 16 16 C 0.09 2.89 6.81 39.05 0.27 3.15 16 17 C -0.14 -3.35 9.96 22.37 0.22 -3.13 16 18 C -0.10 -2.16 10.01 22.30 0.22 -1.93 16 19 C -0.15 -4.17 9.97 22.04 0.22 -3.95 16 20 C -0.08 -2.88 10.05 22.22 0.22 -2.66 16 21 C -0.13 -5.07 6.37 -20.13 -0.13 -5.19 16 22 H 0.02 0.67 7.92 -2.38 -0.02 0.65 16 23 H 0.07 2.89 6.76 -2.39 -0.02 2.87 16 24 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 25 H -0.03 -1.90 8.09 -2.39 -0.02 -1.92 16 26 H -0.01 -0.67 8.06 -2.39 -0.02 -0.68 16 27 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 28 H 0.16 5.85 8.06 -2.91 -0.02 5.83 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.10 1.42 8.10 -2.38 -0.02 1.40 16 32 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 33 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 34 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 35 H 0.11 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -72.80 298.92 3.92 -68.89 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 1.06 Total: 9.11 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: 5.76 Total: -23.63 kcal Atomic # 7 Polarization: -96.63 SS G_CDS: -4.94 Total: -101.56 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -72.80 3.92 -68.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258966767.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.346 kcal (2) G-P(sol) polarization free energy of solvation -72.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds