Wall clock time and date at job start Mon Mar 30 2020 07:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36828 * 125.06025 * 2 1 4 4 C 1.34242 * 109.92674 * 179.97438 * 3 2 1 5 5 C 1.50701 * 126.49793 * 180.02562 * 4 3 2 6 6 H 1.09002 * 109.46909 * 145.02291 * 5 4 3 7 7 N 1.46903 * 109.47340 * 25.02246 * 5 4 3 8 8 C 1.52997 * 109.47011 * 265.02183 * 5 4 3 9 9 C 1.50706 * 109.47238 * 184.99962 * 8 5 4 10 10 H 1.07999 * 119.99515 * 0.02562 * 9 8 5 11 11 C 1.37870 * 120.00176 * 180.02562 * 9 8 5 12 12 N 1.31520 * 119.99883 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00043 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47288 * 59.99994 * 13 11 9 15 15 H 1.48503 * 109.47086 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46819 * 299.99648 * 13 11 9 17 17 C 1.46484 * 106.99718 * 0.25815 * 4 3 2 18 18 C 1.39637 * 134.02936 * 180.50417 * 17 4 3 19 19 C 1.36619 * 119.76524 * 179.57330 * 18 17 4 20 20 C 1.38839 * 120.52636 * 359.70305 * 19 18 17 21 21 C 1.37747 * 120.66854 * 359.97438 * 20 19 18 22 22 C 1.37680 * 125.06386 * 179.97438 * 2 1 3 23 23 H 1.09006 * 109.47010 * 90.03290 * 1 2 3 24 24 H 1.08998 * 109.47118 * 210.02290 * 1 2 3 25 25 H 1.08998 * 109.47282 * 330.02738 * 1 2 3 26 26 H 1.07999 * 125.03499 * 359.96241 * 3 2 1 27 27 H 1.00897 * 110.99735 * 176.04550 * 7 5 4 28 28 H 1.00899 * 110.99867 * 300.00340 * 7 5 4 29 29 H 1.09001 * 109.46832 * 65.00276 * 8 5 4 30 30 H 1.09000 * 109.47611 * 305.00573 * 8 5 4 31 31 H 0.97004 * 119.99507 * 180.02562 * 12 11 9 32 32 H 1.08000 * 120.11855 * 359.25371 * 18 17 4 33 33 H 1.08000 * 119.73804 * 179.71826 * 19 18 17 34 34 H 1.08006 * 119.66504 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.11291 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1200 0.0000 4 6 3.5469 0.7695 0.0006 5 6 4.7284 1.7050 0.0013 6 1 5.5356 1.2702 0.5907 7 7 4.3331 2.9928 0.5871 8 6 5.2066 1.9236 -1.4355 9 6 6.4609 2.7591 -1.4258 10 1 6.8756 3.0996 -0.4886 11 6 7.0788 3.0886 -2.6134 12 7 6.5734 2.6743 -3.7548 13 14 8.6339 4.1236 -2.6014 14 1 9.6904 3.4206 -1.8303 15 1 9.0980 4.3359 -3.9959 16 1 8.3497 5.4366 -1.9684 17 6 3.5945 -0.6945 -0.0054 18 6 4.6294 -1.6319 0.0012 19 6 4.3360 -2.9662 0.0012 20 6 3.0165 -3.3981 0.0008 21 6 1.9802 -2.4906 0.0011 22 6 2.2560 -1.1269 0.0005 23 1 -0.3633 -0.0006 -1.0277 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3634 0.8902 0.5134 26 1 1.8833 2.1355 -0.0006 27 1 5.1237 3.6156 0.6582 28 1 3.5854 3.4163 0.0583 29 1 4.4311 2.4391 -2.0020 30 1 5.4156 0.9598 -1.8996 31 1 7.0085 2.9060 -4.5903 32 1 5.6582 -1.3033 0.0011 33 1 5.1368 -3.6908 0.0017 34 1 2.8004 -4.4563 0.0012 35 1 0.9571 -2.8365 0.0004 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259254445.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:24 Heat of formation + Delta-G solvation = 51.178953 kcal Electronic energy + Delta-G solvation = -17054.420171 eV Core-core repulsion = 14438.271067 eV Total energy + Delta-G solvation = -2616.149104 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.93782 -36.75747 -35.63068 -32.64799 -31.67158 -30.01124 -28.39289 -27.91093 -26.26052 -23.88492 -22.26243 -21.30370 -20.77907 -18.56260 -16.92842 -16.09272 -16.05851 -15.11181 -15.04717 -14.54092 -14.36273 -13.76704 -13.56498 -13.25012 -12.81344 -12.54120 -12.41036 -12.06117 -11.97468 -11.49391 -11.22839 -11.01431 -10.83932 -10.72320 -10.40450 -10.21211 -9.89381 -9.15125 -9.02666 -8.39725 -7.77879 -7.75536 -7.00972 -6.01562 -4.06009 1.52128 1.99147 3.13698 3.20298 3.31600 3.36614 3.38887 4.30358 4.44030 4.85326 5.00435 5.20106 5.22826 5.29369 5.33269 5.40297 5.45943 5.59485 5.82962 5.88069 6.11494 6.21007 6.30645 6.34338 6.69589 6.84681 6.87815 7.00618 7.15748 7.30392 7.55744 7.63138 7.65843 7.74334 7.94022 8.17728 8.28864 8.42196 9.01457 9.58597 11.08858 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.027759 B = 0.006056 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.439004 B = 4622.098946 C = 5160.256051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.494 5.494 3 C 0.041 3.959 4 C -0.128 4.128 5 C 0.159 3.841 6 H 0.073 0.927 7 N -0.841 5.841 8 C 0.004 3.996 9 C -0.525 4.525 10 H 0.056 0.944 11 C 0.060 3.940 12 N -0.892 5.892 13 Si 0.892 3.108 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.277 1.277 17 C -0.097 4.097 18 C -0.058 4.058 19 C -0.159 4.159 20 C -0.105 4.105 21 C -0.138 4.138 22 C 0.096 3.904 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.163 0.837 27 H 0.346 0.654 28 H 0.325 0.675 29 H 0.014 0.986 30 H 0.020 0.980 31 H 0.261 0.739 32 H 0.123 0.877 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.806 -7.414 7.329 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.179 5.179 3 C -0.082 4.082 4 C -0.134 4.134 5 C 0.048 3.952 6 H 0.091 0.909 7 N -0.369 5.369 8 C -0.035 4.035 9 C -0.563 4.563 10 H 0.074 0.926 11 C -0.142 4.142 12 N -0.530 5.530 13 Si 0.719 3.281 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.202 1.202 17 C -0.103 4.103 18 C -0.076 4.076 19 C -0.178 4.178 20 C -0.124 4.124 21 C -0.159 4.159 22 C -0.010 4.010 23 H 0.082 0.918 24 H 0.093 0.907 25 H 0.097 0.903 26 H 0.180 0.820 27 H 0.159 0.841 28 H 0.136 0.864 29 H 0.032 0.968 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.141 0.859 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.327 -7.777 7.791 15.795 hybrid contribution 1.046 0.980 -1.217 1.880 sum -10.281 -6.797 6.574 13.968 Atomic orbital electron populations 1.21809 0.78010 1.03519 1.02432 1.43667 1.05288 1.04393 1.64540 1.21388 0.89989 0.90405 1.06403 1.20570 0.94177 0.91485 1.07206 1.19868 0.91281 0.87163 0.96915 0.90903 1.59209 1.14160 1.06718 1.56776 1.19753 0.95869 0.97347 0.90542 1.21167 1.09902 1.32817 0.92407 0.92629 1.25014 0.97445 0.96100 0.95656 1.69977 1.40025 1.45582 0.97459 0.86670 0.83655 0.80786 0.76949 1.20203 1.21372 1.20241 1.19120 0.91972 0.93179 1.06018 1.20390 0.98481 0.91973 0.96763 1.20540 0.96223 0.95422 1.05644 1.20683 0.92388 0.98324 1.00996 1.19867 0.98919 0.89290 1.07847 1.18235 0.90273 0.88192 1.04328 0.91836 0.90728 0.90257 0.81968 0.84109 0.86412 0.96794 0.96187 0.92950 0.85862 0.86480 0.86429 0.87082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 11.03 59.85 0.66 1.53 16 2 N -0.49 -7.65 3.18 -121.80 -0.39 -8.04 16 3 C 0.04 0.70 10.58 -16.73 -0.18 0.52 16 4 C -0.13 -2.53 5.44 -102.71 -0.56 -3.09 16 5 C 0.16 3.41 3.27 -68.86 -0.23 3.18 16 6 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 7 N -0.84 -15.94 8.95 -5.65 -0.05 -15.99 16 8 C 0.00 0.09 4.60 -27.88 -0.13 -0.04 16 9 C -0.52 -14.40 8.55 -34.44 -0.29 -14.69 16 10 H 0.06 1.46 7.15 -52.49 -0.38 1.09 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 13 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 17 C -0.10 -1.88 6.35 -105.14 -0.67 -2.54 16 18 C -0.06 -1.03 10.05 -39.64 -0.40 -1.43 16 19 C -0.16 -2.40 9.97 -39.94 -0.40 -2.79 16 20 C -0.10 -1.45 10.01 -39.54 -0.40 -1.84 16 21 C -0.14 -2.01 9.97 -39.43 -0.39 -2.40 16 22 C 0.10 1.64 6.81 -83.99 -0.57 1.06 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.16 2.41 7.31 -52.49 -0.38 2.03 16 27 H 0.35 6.67 7.90 -39.29 -0.31 6.36 16 28 H 0.33 5.79 7.97 -39.29 -0.31 5.48 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 33 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 35 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 298.04 15.07 4.49 4.49 Total: -1.00 -31.74 298.04 -8.62 -40.36 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -4.74 Total: 9.74 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -3.65 Total: -20.94 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: 0.30 Total: -50.07 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.74 -8.62 -40.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259254445.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.541 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds