Wall clock time and date at job start Mon Mar 30 2020 07:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36829 * 125.06403 * 2 1 4 4 C 1.34240 * 109.93069 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.50332 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47381 * 219.97655 * 5 4 3 7 7 N 1.46902 * 109.47304 * 339.97596 * 5 4 3 8 8 C 1.52998 * 109.46956 * 99.97150 * 5 4 3 9 9 C 1.50703 * 109.47034 * 174.99972 * 8 5 4 10 10 H 1.07994 * 120.00073 * 0.02562 * 9 8 5 11 11 C 1.37878 * 120.00128 * 179.97438 * 9 8 5 12 12 N 1.31520 * 120.00096 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00371 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47099 * 59.99819 * 13 11 9 15 15 H 1.48491 * 109.47379 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.46758 * 300.00274 * 13 11 9 17 17 C 1.46486 * 106.99899 * 359.97438 * 4 3 2 18 18 C 1.39624 * 134.03525 * 180.02562 * 17 4 3 19 19 C 1.36629 * 119.76809 * 179.97438 * 18 17 4 20 20 C 1.38832 * 120.52376 * 0.26497 * 19 18 17 21 21 C 1.37747 * 120.66724 * 359.47946 * 20 19 18 22 22 C 1.37691 * 125.06074 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47729 * 269.96560 * 1 2 3 24 24 H 1.09006 * 109.46756 * 29.96591 * 1 2 3 25 25 H 1.09006 * 109.47032 * 149.96194 * 1 2 3 26 26 H 1.08000 * 125.03789 * 0.03014 * 3 2 1 27 27 H 1.00904 * 110.99772 * 59.99357 * 7 5 4 28 28 H 1.00899 * 111.00351 * 183.94916 * 7 5 4 29 29 H 1.09001 * 109.47899 * 295.00024 * 8 5 4 30 30 H 1.09001 * 109.47424 * 55.00770 * 8 5 4 31 31 H 0.96996 * 120.00108 * 179.97438 * 12 11 9 32 32 H 1.08003 * 120.11408 * 0.02562 * 18 17 4 33 33 H 1.08002 * 119.73492 * 179.97438 * 19 18 17 34 34 H 1.08002 * 119.66532 * 179.74157 * 20 19 18 35 35 H 1.08005 * 120.11052 * 180.23654 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1200 0.0000 4 6 3.5469 0.7695 -0.0006 5 6 4.7285 1.7048 -0.0002 6 1 5.5020 1.3133 -0.6609 7 7 4.3047 3.0294 -0.4734 8 6 5.2837 1.8245 1.4204 9 6 6.5373 2.6608 1.4011 10 1 6.9012 3.0667 0.4688 11 6 7.2189 2.9086 2.5737 12 7 6.7754 2.4147 3.7091 13 14 8.7723 3.9458 2.5498 14 1 8.4561 5.2988 2.0259 15 1 9.3112 4.0618 3.9286 16 1 9.7848 3.3007 1.6757 17 6 3.5946 -0.6946 -0.0003 18 6 4.6294 -1.6319 -0.0002 19 6 4.3360 -2.9663 0.0005 20 6 3.0165 -3.3982 -0.0043 21 6 1.9803 -2.4907 0.0007 22 6 2.2559 -1.1271 -0.0005 23 1 -0.3634 -0.0006 1.0276 24 1 -0.3633 0.8904 -0.5133 25 1 -0.3633 -0.8897 -0.5145 26 1 1.8835 2.1355 0.0005 27 1 3.5874 3.4140 0.1230 28 1 5.0916 3.6571 -0.5436 29 1 4.5409 2.2981 2.0623 30 1 5.5157 0.8312 1.8048 31 1 7.2551 2.5888 4.5339 32 1 5.6582 -1.3033 0.0001 33 1 5.1369 -3.6909 0.0002 34 1 2.8004 -4.4563 -0.0079 35 1 0.9571 -2.8366 0.0007 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259254446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:29 Heat of formation + Delta-G solvation = 51.272301 kcal Electronic energy + Delta-G solvation = -17066.193660 eV Core-core repulsion = 14450.048603 eV Total energy + Delta-G solvation = -2616.145056 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.93124 -36.74758 -35.63218 -32.64342 -31.66863 -30.00235 -28.40290 -27.89649 -26.25549 -23.88541 -22.24819 -21.31896 -20.73404 -18.57303 -16.92061 -16.08961 -16.05802 -15.10829 -15.03582 -14.53957 -14.36004 -13.76312 -13.55842 -13.24206 -12.80955 -12.53634 -12.40310 -12.05549 -11.96254 -11.50083 -11.20993 -11.01443 -10.83901 -10.71697 -10.39421 -10.22758 -9.89134 -9.14292 -9.01686 -8.39444 -7.77255 -7.75843 -7.00450 -6.01323 -4.05776 1.53057 1.99965 3.14145 3.20676 3.31666 3.36733 3.38960 4.31305 4.44183 4.85420 5.01204 5.20442 5.22950 5.30362 5.33533 5.41068 5.46262 5.59324 5.83376 5.89066 6.12632 6.22462 6.31551 6.35779 6.70212 6.85703 6.87638 7.01458 7.16624 7.31179 7.55798 7.63880 7.66500 7.74588 7.94352 8.17782 8.28806 8.42208 9.01739 9.58779 11.09091 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.027645 B = 0.006120 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.590741 B = 4574.436064 C = 5150.671258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.495 5.495 3 C 0.041 3.959 4 C -0.129 4.129 5 C 0.160 3.840 6 H 0.073 0.927 7 N -0.841 5.841 8 C 0.004 3.996 9 C -0.525 4.525 10 H 0.055 0.945 11 C 0.060 3.940 12 N -0.892 5.892 13 Si 0.892 3.108 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.276 1.276 17 C -0.097 4.097 18 C -0.057 4.057 19 C -0.159 4.159 20 C -0.104 4.104 21 C -0.139 4.139 22 C 0.096 3.904 23 H 0.063 0.937 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.164 0.836 27 H 0.326 0.674 28 H 0.346 0.654 29 H 0.014 0.986 30 H 0.020 0.980 31 H 0.261 0.739 32 H 0.124 0.876 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.177 -6.913 -7.199 14.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.179 5.179 3 C -0.082 4.082 4 C -0.135 4.135 5 C 0.048 3.952 6 H 0.091 0.909 7 N -0.369 5.369 8 C -0.035 4.035 9 C -0.563 4.563 10 H 0.074 0.926 11 C -0.142 4.142 12 N -0.530 5.530 13 Si 0.719 3.281 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.202 1.202 17 C -0.103 4.103 18 C -0.075 4.075 19 C -0.178 4.178 20 C -0.124 4.124 21 C -0.160 4.160 22 C -0.010 4.010 23 H 0.081 0.919 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.181 0.819 27 H 0.136 0.864 28 H 0.159 0.841 29 H 0.032 0.968 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.142 0.858 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.723 -7.243 -7.680 15.776 hybrid contribution 1.110 0.901 1.211 1.874 sum -10.613 -6.342 -6.469 13.953 Atomic orbital electron populations 1.21806 0.78030 1.03508 1.02413 1.43673 1.05277 1.04405 1.64585 1.21401 0.89973 0.90410 1.06414 1.20577 0.94175 0.91500 1.07290 1.19866 0.91004 0.86587 0.97769 0.90890 1.59205 1.16305 1.05294 1.56108 1.19746 0.95549 0.97596 0.90603 1.21168 1.09484 1.32230 0.93422 0.92638 1.25016 0.97599 0.95969 0.95628 1.69973 1.39754 1.44910 0.98389 0.86672 0.83596 0.80813 0.76988 1.20249 1.21374 1.20206 1.19113 0.91956 0.93172 1.06025 1.20403 0.98530 0.91963 0.96633 1.20544 0.96218 0.95436 1.05640 1.20681 0.92391 0.98319 1.00977 1.19862 0.98908 0.89293 1.07906 1.18240 0.90273 0.88193 1.04334 0.91852 0.90269 0.90738 0.81892 0.86387 0.84088 0.96802 0.96154 0.92948 0.85813 0.86478 0.86437 0.87095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.87 11.03 59.84 0.66 1.53 16 2 N -0.49 -7.65 3.18 -121.80 -0.39 -8.04 16 3 C 0.04 0.69 10.54 -16.73 -0.18 0.52 16 4 C -0.13 -2.55 5.47 -102.71 -0.56 -3.11 16 5 C 0.16 3.40 3.27 -68.87 -0.23 3.18 16 6 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 7 N -0.84 -15.90 8.89 -5.66 -0.05 -15.95 16 8 C 0.00 0.09 4.60 -27.88 -0.13 -0.03 16 9 C -0.52 -14.40 8.55 -34.44 -0.29 -14.69 16 10 H 0.06 1.46 7.14 -52.49 -0.38 1.09 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 13 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 C -0.10 -1.88 6.35 -105.14 -0.67 -2.55 16 18 C -0.06 -1.02 10.05 -39.65 -0.40 -1.42 16 19 C -0.16 -2.42 9.97 -39.94 -0.40 -2.82 16 20 C -0.10 -1.45 10.01 -39.54 -0.40 -1.85 16 21 C -0.14 -2.03 9.97 -39.43 -0.39 -2.42 16 22 C 0.10 1.64 6.81 -83.98 -0.57 1.07 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 26 H 0.16 2.41 7.31 -52.49 -0.38 2.03 16 27 H 0.33 5.79 8.00 -39.29 -0.31 5.48 16 28 H 0.35 6.66 7.90 -39.29 -0.31 6.35 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.12 2.23 8.06 -52.48 -0.42 1.80 16 33 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 35 H 0.11 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 298.00 15.07 4.49 4.49 Total: -1.00 -31.70 298.00 -8.62 -40.32 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -4.74 Total: 9.82 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -3.65 Total: -21.01 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.30 Total: -50.03 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.70 -8.62 -40.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259254446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.595 kcal (2) G-P(sol) polarization free energy of solvation -31.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds