Wall clock time and date at job start Mon Mar 30 2020 07:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36829 * 125.06403 * 2 1 4 4 C 1.34240 * 109.93069 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.50332 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.47381 * 219.97655 * 5 4 3 7 7 N 1.46902 * 109.47304 * 339.97596 * 5 4 3 8 8 C 1.52998 * 109.46956 * 99.97150 * 5 4 3 9 9 C 1.50703 * 109.47034 * 174.99972 * 8 5 4 10 10 H 1.07994 * 120.00073 * 0.02562 * 9 8 5 11 11 C 1.37878 * 120.00128 * 179.97438 * 9 8 5 12 12 N 1.31520 * 120.00096 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00371 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47099 * 59.99819 * 13 11 9 15 15 H 1.48491 * 109.47379 * 180.02562 * 13 11 9 16 16 H 1.48509 * 109.46758 * 300.00274 * 13 11 9 17 17 C 1.46486 * 106.99899 * 359.97438 * 4 3 2 18 18 C 1.39624 * 134.03525 * 180.02562 * 17 4 3 19 19 C 1.36629 * 119.76809 * 179.97438 * 18 17 4 20 20 C 1.38832 * 120.52376 * 0.26497 * 19 18 17 21 21 C 1.37747 * 120.66724 * 359.47946 * 20 19 18 22 22 C 1.37691 * 125.06074 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.47729 * 269.96560 * 1 2 3 24 24 H 1.09006 * 109.46756 * 29.96591 * 1 2 3 25 25 H 1.09006 * 109.47032 * 149.96194 * 1 2 3 26 26 H 1.08000 * 125.03789 * 0.03014 * 3 2 1 27 27 H 1.00904 * 110.99772 * 59.99357 * 7 5 4 28 28 H 1.00899 * 111.00351 * 183.94916 * 7 5 4 29 29 H 1.09001 * 109.47899 * 295.00024 * 8 5 4 30 30 H 1.09001 * 109.47424 * 55.00770 * 8 5 4 31 31 H 0.96996 * 120.00108 * 179.97438 * 12 11 9 32 32 H 1.08003 * 120.11408 * 0.02562 * 18 17 4 33 33 H 1.08002 * 119.73492 * 179.97438 * 19 18 17 34 34 H 1.08002 * 119.66532 * 179.74157 * 20 19 18 35 35 H 1.08005 * 120.11052 * 180.23654 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2510 1.1200 0.0000 4 6 3.5469 0.7695 -0.0006 5 6 4.7285 1.7048 -0.0002 6 1 5.5020 1.3133 -0.6609 7 7 4.3047 3.0294 -0.4734 8 6 5.2837 1.8245 1.4204 9 6 6.5373 2.6608 1.4011 10 1 6.9012 3.0667 0.4688 11 6 7.2189 2.9086 2.5737 12 7 6.7754 2.4147 3.7091 13 14 8.7723 3.9458 2.5498 14 1 8.4561 5.2988 2.0259 15 1 9.3112 4.0618 3.9286 16 1 9.7848 3.3007 1.6757 17 6 3.5946 -0.6946 -0.0003 18 6 4.6294 -1.6319 -0.0002 19 6 4.3360 -2.9663 0.0005 20 6 3.0165 -3.3982 -0.0043 21 6 1.9803 -2.4907 0.0007 22 6 2.2559 -1.1271 -0.0005 23 1 -0.3634 -0.0006 1.0276 24 1 -0.3633 0.8904 -0.5133 25 1 -0.3633 -0.8897 -0.5145 26 1 1.8835 2.1355 0.0005 27 1 3.5874 3.4140 0.1230 28 1 5.0916 3.6571 -0.5436 29 1 4.5409 2.2981 2.0623 30 1 5.5157 0.8312 1.8048 31 1 7.2551 2.5888 4.5339 32 1 5.6582 -1.3033 0.0001 33 1 5.1369 -3.6909 0.0002 34 1 2.8004 -4.4563 -0.0079 35 1 0.9571 -2.8366 0.0007 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259254446.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:28 Heat of formation + Delta-G solvation = 31.400836 kcal Electronic energy + Delta-G solvation = -17067.055351 eV Core-core repulsion = 14450.048603 eV Total energy + Delta-G solvation = -2617.006748 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 244.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.17947 -37.99136 -37.29055 -34.62421 -33.04259 -31.15101 -30.01245 -29.50615 -27.58426 -25.62465 -23.54282 -22.88535 -22.10494 -19.99692 -18.74277 -17.67736 -17.28813 -16.61949 -16.31148 -16.10073 -15.87614 -15.18194 -14.75643 -14.62815 -14.47126 -14.09234 -13.69531 -13.48244 -13.40489 -13.06590 -12.82057 -12.52522 -12.45825 -12.18883 -12.05617 -11.83837 -11.68010 -11.16386 -10.61443 -10.36597 -9.42112 -9.01716 -8.36012 -8.17528 -6.33045 0.28387 0.76908 1.39339 1.42398 1.50037 1.84881 2.03066 2.40018 3.05169 3.12120 3.83998 3.85550 3.97619 4.11259 4.25434 4.36102 4.49763 4.51151 4.62163 4.68269 4.74175 4.89831 4.96044 4.97575 5.08143 5.27763 5.41126 5.57383 5.64944 5.76289 5.77792 5.92295 5.97737 6.18053 6.32985 6.47077 6.56749 6.76750 6.84280 7.36801 8.90923 Molecular weight = 244.13amu Principal moments of inertia in cm(-1) A = 0.027645 B = 0.006120 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.590741 B = 4574.436064 C = 5150.671258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.491 5.491 3 C 0.057 3.943 4 C -0.180 4.180 5 C 0.179 3.821 6 H 0.054 0.946 7 N -0.825 5.825 8 C 0.019 3.981 9 C -0.537 4.537 10 H 0.065 0.935 11 C 0.001 3.999 12 N -0.933 5.933 13 Si 0.966 3.034 14 H -0.262 1.262 15 H -0.287 1.287 16 H -0.269 1.269 17 C -0.135 4.135 18 C -0.095 4.095 19 C -0.154 4.154 20 C -0.102 4.102 21 C -0.133 4.133 22 C 0.079 3.921 23 H 0.074 0.926 24 H 0.100 0.900 25 H 0.096 0.904 26 H 0.185 0.815 27 H 0.334 0.666 28 H 0.344 0.656 29 H -0.013 1.013 30 H -0.021 1.021 31 H 0.262 0.738 32 H 0.102 0.898 33 H 0.139 0.861 34 H 0.159 0.841 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.782 -7.419 -8.100 16.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.175 5.175 3 C -0.068 4.068 4 C -0.187 4.187 5 C 0.066 3.934 6 H 0.072 0.928 7 N -0.353 5.353 8 C -0.020 4.020 9 C -0.575 4.575 10 H 0.083 0.917 11 C -0.197 4.197 12 N -0.574 5.574 13 Si 0.790 3.210 14 H -0.187 1.187 15 H -0.212 1.212 16 H -0.194 1.194 17 C -0.140 4.140 18 C -0.114 4.114 19 C -0.173 4.173 20 C -0.121 4.121 21 C -0.153 4.153 22 C -0.027 4.027 23 H 0.093 0.907 24 H 0.119 0.881 25 H 0.114 0.886 26 H 0.202 0.798 27 H 0.146 0.854 28 H 0.157 0.843 29 H 0.005 0.995 30 H -0.003 1.003 31 H 0.071 0.929 32 H 0.120 0.880 33 H 0.157 0.843 34 H 0.176 0.824 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.367 -7.755 -8.603 17.687 hybrid contribution 1.521 0.973 1.492 2.343 sum -11.846 -6.782 -7.110 15.390 Atomic orbital electron populations 1.22197 0.74680 1.05749 1.03853 1.43969 1.07153 1.03277 1.63053 1.21666 0.89446 0.91838 1.03845 1.20495 0.94739 0.91957 1.11537 1.19412 0.91683 0.88190 0.94096 0.92800 1.59178 1.16190 1.04273 1.55636 1.19574 0.94756 0.94593 0.93042 1.21568 1.10015 1.32057 0.93875 0.91673 1.25987 1.01260 0.97281 0.95136 1.70130 1.41517 1.46547 0.99160 0.85489 0.79029 0.79394 0.77047 1.18673 1.21222 1.19436 1.19430 0.93809 0.93261 1.07529 1.20471 0.97636 0.93613 0.99686 1.20883 0.98102 0.94459 1.03895 1.21164 0.91311 1.00365 0.99277 1.20339 1.00984 0.88053 1.05927 1.18574 0.89563 0.89698 1.04874 0.90717 0.88125 0.88571 0.79782 0.85446 0.84290 0.99502 1.00300 0.92918 0.88011 0.84275 0.82362 0.83425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 11.03 127.77 1.41 2.70 16 2 N -0.49 -14.36 3.18 -539.26 -1.71 -16.07 16 3 C 0.06 1.93 10.54 83.00 0.87 2.80 16 4 C -0.18 -7.44 5.47 -18.63 -0.10 -7.54 16 5 C 0.18 8.04 3.27 44.17 0.14 8.18 16 6 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 7 N -0.83 -31.69 8.89 -171.81 -1.53 -33.21 16 8 C 0.02 1.05 4.60 29.85 0.14 1.19 16 9 C -0.54 -30.48 8.55 25.60 0.22 -30.26 16 10 H 0.07 3.49 7.14 -2.91 -0.02 3.47 16 11 C 0.00 0.07 5.46 84.65 0.46 0.53 16 12 N -0.93 -58.02 13.29 21.45 0.28 -57.73 16 13 Si 0.97 44.53 29.54 68.60 2.03 46.56 16 14 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 15 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 C -0.14 -5.43 6.35 -20.20 -0.13 -5.56 16 18 C -0.10 -3.65 10.05 22.23 0.22 -3.43 16 19 C -0.15 -4.63 9.97 22.04 0.22 -4.41 16 20 C -0.10 -2.56 10.01 22.30 0.22 -2.34 16 21 C -0.13 -3.48 9.97 22.37 0.22 -3.26 16 22 C 0.08 2.64 6.81 39.03 0.27 2.90 16 23 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.10 1.26 8.10 -2.38 -0.02 1.24 16 26 H 0.19 5.21 7.31 -2.91 -0.02 5.19 16 27 H 0.33 11.92 8.00 -89.69 -0.72 11.20 16 28 H 0.34 13.38 7.90 -89.69 -0.71 12.67 16 29 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 30 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 31 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 32 H 0.10 4.12 8.06 -2.91 -0.02 4.10 16 33 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 34 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 35 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -72.20 298.00 2.91 -69.29 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: -0.33 Total: 29.64 kcal Atomic # 6 Polarization: -42.65 SS G_CDS: 4.17 Total: -38.48 kcal Atomic # 7 Polarization: -104.06 SS G_CDS: -2.96 Total: -107.01 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -72.20 2.91 -69.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259254446.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.686 kcal (2) G-P(sol) polarization free energy of solvation -72.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds